UHGV-0099557

Genome information

vOTU vOTU-022065

Genome length 26,560 bps

CDS count 36

Completeness 67.20% (medium-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099557
vOTU ID	vOTU-022065
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_222107
BioSample	SAMEA3541472
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.39
Jumbo phage	No

Genome content
Genome length	26,560 bps
GC content	43.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	90.20%
Average CDS length	670.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099557_1	PHROG	phrog_199	holin	lysis
UHGV-0099557_1	UniRef90	UniRef90_A0A417CRV5	Holin	NA
UHGV-0099557_1	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-0099557_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0099557_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0099557_2	UniRef90	UniRef90_A0A417CS53	Peptidase S74 domain-containing protein	NA
UHGV-0099557_2	eggNOG-mapper	411459.RUMOBE_00913	NA	NA
UHGV-0099557_2	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0099557_4	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0099557_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0099557_4	UniRef90	UniRef90_A0A1C5YVZ3	Tyrosine recombinase XerD	NA
UHGV-0099557_4	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0099557_4	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0099557_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0099557_4	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0099557_4	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0099557_5	eggNOG-mapper	411459.RUMOBE_04220	Histidine kinase	NA
UHGV-0099557_5	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0099557_6	PHROG	phrog_16267	NA	unknown function
UHGV-0099557_6	UniRef90	UniRef90_UPI00073E79CE	phage tail protein	NA
UHGV-0099557_6	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0099557_6	COG	COG4926	Phage-related protein	NA
UHGV-0099557_6	Structural annotation	PF05113, PF02010, NF033848, NF011764, COG3500	NA	NA
UHGV-0099557_7	PHROG	phrog_1401	NA	unknown function
UHGV-0099557_7	UniRef90	UniRef90_A0A7C6P910	NA	NA
UHGV-0099557_7	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0099557_7	Structural annotation	PF07761	NA	NA
UHGV-0099557_8	PHROG	phrog_2566	NA	unknown function
UHGV-0099557_8	eggNOG-mapper	203120.LEUM_1633	NA	NA
UHGV-0099557_9	PHROG	phrog_1194	NA	unknown function
UHGV-0099557_9	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0099557_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0099557_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0099557_10	UniRef90	UniRef90_A0A1C5RGR7	Phage-related protein	NA
UHGV-0099557_10	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0099557_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0099557_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0099557_12	PHROG	phrog_8355	NA	unknown function
UHGV-0099557_12	UniRef90	UniRef90_UPI001C031F13	Gp15 family bacteriophage protein	NA
UHGV-0099557_12	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0099557_13	PHROG	phrog_8300	NA	unknown function
UHGV-0099557_13	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-0099557_13	Structural annotation	PF06854	NA	NA
UHGV-0099557_14	PHROG	phrog_820	major tail protein	tail
UHGV-0099557_14	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0099557_14	Structural annotation	PF06199, TIGR02241, COG5437	NA	NA
UHGV-0099557_15	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0099557_15	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-0099557_15	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-0099557_15	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0099557_15	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0099557_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0099557_16	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0099557_17	PHROG	phrog_8710	NA	unknown function
UHGV-0099557_17	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0099557_17	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0099557_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0099557_18	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0099557_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0099557_19	UniRef90	UniRef90_A0A414EG86	Phage capsid protein	NA
UHGV-0099557_19	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0099557_19	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0099557_20	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0099557_20	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0099557_23	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0099557_23	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0099557_23	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0099557_24	PHROG	phrog_918	NA	unknown function
UHGV-0099557_24	UniRef90	UniRef90_UPI000E468F85	NA	NA
UHGV-0099557_24	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0099557_24	Pfam	PF19791	NA	DUF6275
UHGV-0099557_24	Structural annotation	PF19791	NA	NA
UHGV-0099557_25	PHROG	phrog_1048	NA	unknown function
UHGV-0099557_25	UniRef90	UniRef90_UPI001D0240A6	NA	NA
UHGV-0099557_25	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0099557_25	Pfam	PF11195	NA	DUF2829
UHGV-0099557_25	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0099557_25	Structural annotation	PF11195	NA	NA
UHGV-0099557_26	Structural annotation	PF11344	NA	NA
UHGV-0099557_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0099557_27	UniRef90	UniRef90_A0A1C5PIA8	Phage minor capsid protein 2	NA
UHGV-0099557_27	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0099557_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0099557_27	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0099557_27	Structural annotation	PF06152	NA	NA
UHGV-0099557_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0099557_28	UniRef90	UniRef90_A0A1C5YZW6	Phage portal protein, putative, A118 family	NA
UHGV-0099557_28	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0099557_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0099557_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0099557_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0099557_29	UniRef90	UniRef90_A0A417CQ07	Terminase	NA
UHGV-0099557_29	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0099557_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0099557_29	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0099557_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0099557_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0099557_30	UniRef90	UniRef90_A0A417CPY2	Terminase small subunit	NA
UHGV-0099557_30	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-0099557_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0099557_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0099557_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0099557_31	Pfam	PF20385	NA	DUF6680
UHGV-0099557_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0099557_32	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0099557_32	eggNOG-mapper	476272.RUMHYD_02841	NA	NA
UHGV-0099557_32	Structural annotation	PF02996	NA	NA