UHGV-0099574

Genome information

Genome length 25,583 bps

CDS count 51

Completeness 62.27% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099574
vOTU ID	vOTU-039553
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_205276
BioSample	SAMEA3449340
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.36
Jumbo phage	No

Genome content
Genome length	25,583 bps
GC content	52.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	83.51%
Average CDS length	424.53 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099574_1	eggNOG-mapper	1354300.AUQY01000005_gene215	NA	NA
UHGV-0099574_3	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0099574_3	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-0099574_3	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0099574_3	Structural annotation	PF16677	NA	NA
UHGV-0099574_5	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0099574_5	Structural annotation	TIGR01636	NA	NA
UHGV-0099574_8	PHROG	phrog_18716	NA	unknown function
UHGV-0099574_8	UniRef90	UniRef90_R6RP50	NA	NA
UHGV-0099574_8	eggNOG-mapper	575540.Isop_2447	NA	NA
UHGV-0099574_8	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0099574_8	Structural annotation	PF18909	NA	NA
UHGV-0099574_9	PHROG	phrog_22543	NA	unknown function
UHGV-0099574_9	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0099574_11	PHROG	phrog_22543	NA	unknown function
UHGV-0099574_11	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0099574_12	UniRef90	UniRef90_A0A8D9PDQ6	Restriction alleviation protein	NA
UHGV-0099574_12	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0099574_12	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0099574_12	Structural annotation	TIGR03655	NA	NA
UHGV-0099574_13	PHROG	phrog_2131	NA	unknown function
UHGV-0099574_13	UniRef90	UniRef90_O34053	ORF22	NA
UHGV-0099574_13	eggNOG-mapper	73422.L0P2P5_9CAUD	NA	NA
UHGV-0099574_14	PHROG	phrog_3136	NA	unknown function
UHGV-0099574_14	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0099574_14	Pfam	PF04266	ASCH domain	ASCH
UHGV-0099574_14	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0099574_14	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0099574_15	PHROG	phrog_38832	NA	unknown function
UHGV-0099574_15	eggNOG-mapper	445972.ANACOL_00165	NA	NA
UHGV-0099574_15	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0099574_16	PHROG	phrog_22529	NA	unknown function
UHGV-0099574_16	UniRef90	UniRef90_A0A810Q1V0	3D domain-containing protein	NA
UHGV-0099574_16	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0099574_16	Pfam	PF06725	3D domain	3D
UHGV-0099574_16	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0099574_16	Structural annotation	PF06725, NF040670, COG3584	NA	NA
UHGV-0099574_17	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0099574_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0099574_17	UniRef90	UniRef90_UPI001D0C2D23	helix-turn-helix domain-containing protein	NA
UHGV-0099574_17	eggNOG-mapper	160492.XF_0696	Helix-turn-helix domain	NA
UHGV-0099574_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0099574_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0099574_17	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0099574_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0099574_19	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0099574_19	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0099574_19	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0099574_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0099574_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0099574_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0099574_20	Structural annotation	TIGR00122, COG1654	NA	NA
UHGV-0099574_21	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0099574_21	UniRef90	UniRef90_A0A6N9PX21	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0099574_21	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0099574_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0099574_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0099574_22	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0099574_22	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0099574_22	UniRef90	UniRef90_A0A173WM13	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0099574_22	eggNOG-mapper	755731.Clo1100_3519	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0099574_22	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0099574_22	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0099574_22	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0099574_23	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0099574_23	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0099574_23	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0099574_23	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0099574_23	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0099574_23	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0099574_23	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0099574_24	PHROG	phrog_15768	NA	unknown function
UHGV-0099574_24	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0099574_24	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0099574_24	Structural annotation	PF01475, MF_01819, NF006999, COG0735	NA	NA
UHGV-0099574_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0099574_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0099574_25	UniRef90	UniRef90_A0A810PUK9	Single-stranded DNA-binding protein	NA
UHGV-0099574_25	eggNOG-mapper	1203606.HMPREF1526_01880	Single-stranded DNA-binding protein	NA
UHGV-0099574_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0099574_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0099574_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0099574_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0099574_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0099574_27	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0099574_27	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0099574_27	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0099574_27	Structural annotation	PF05772	NA	NA
UHGV-0099574_28	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0099574_28	UniRef90	UniRef90_A0A1C6J8G0	ERF superfamily	NA
UHGV-0099574_28	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-0099574_28	Pfam	PF04404	ERF superfamily	ERF
UHGV-0099574_28	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0099574_31	PHROG	phrog_4433	NA	unknown function
UHGV-0099574_31	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0099574_31	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0099574_33	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0099574_33	Structural annotation	PF11112, COG3311	NA	NA
UHGV-0099574_34	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0099574_34	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0099574_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0099574_34	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0099574_35	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0099574_36	Structural annotation	COG1321	NA	NA
UHGV-0099574_39	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0099574_39	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0099574_40	KOfam	K14059	int; integrase	NA
UHGV-0099574_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0099574_40	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0099574_40	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0099574_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0099574_40	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0099574_40	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0099574_41	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0099574_42	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0099574_43	PHROG	phrog_16490	NA	unknown function
UHGV-0099574_43	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0099574_44	PHROG	phrog_22984	NA	unknown function
UHGV-0099574_47	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0099574_47	PHROG	phrog_670	endolysin	lysis
UHGV-0099574_47	UniRef90	UniRef90_A0A252F607	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0099574_47	eggNOG-mapper	411463.EUBVEN_00418	Ami_2	NA
UHGV-0099574_47	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0099574_47	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0099574_47	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0099574_47	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0099574_48	PHROG	phrog_1129	holin	lysis
UHGV-0099574_48	UniRef90	UniRef90_R5D220	Putative holin	NA
UHGV-0099574_48	eggNOG-mapper	1007096.BAGW01000032_gene1582	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0099574_48	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0099574_48	Structural annotation	PF06946	NA	NA
UHGV-0099574_49	PHROG	phrog_35892	NA	unknown function
UHGV-0099574_49	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0099574_49	Structural annotation	PF13306, NF041351	NA	NA
UHGV-0099574_50	PHROG	phrog_15594	NA	unknown function
UHGV-0099574_50	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0099574_50	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0099574_51	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA