UHGV-0099594

Genome information

Genome length 31,344 bps

CDS count 42

Completeness 73.98% (medium-quality)

geNomad score 0.9523

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099594
vOTU ID	vOTU-017207
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_201753
BioSample	SAMEA3449301
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9523
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.41
Jumbo phage	No

Genome content
Genome length	31,344 bps
GC content	54.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	90.07%
Average CDS length	672.79 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099594_1	KOfam	K06148	ABCC-BAC; ATP-binding cassette, subfamily C, bacterial	NA
UHGV-0099594_1	PHROG	phrog_2392	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0099594_1	UniRef90	UniRef90_A0A2K4ZB33	Multidrug export ATP-binding/permease protein	NA
UHGV-0099594_1	eggNOG-mapper	1536775.H70737_06190	ABC-type multidrug transport system, ATPase and permease	NA
UHGV-0099594_1	Pfam	PF00664	ABC transporter transmembrane region	ABC_membrane
UHGV-0099594_1	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0099594_1	COG	COG1132	ABC-type multidrug transport system, ATPase and permease component	NA
UHGV-0099594_3	Pfam	PF18933	PsbP-like protein	PsbP_2
UHGV-0099594_4	KOfam	K09388	NA	NA
UHGV-0099594_4	eggNOG-mapper	572546.Arcpr_0008	NA	NA
UHGV-0099594_4	COG	COG3465	NA	NA
UHGV-0099594_5	KOfam	K06885	NA	NA
UHGV-0099594_5	PHROG	phrog_35128	NA	unknown function
UHGV-0099594_5	UniRef90	UniRef90_A0A416FMJ5	HD domain-containing protein	NA
UHGV-0099594_5	eggNOG-mapper	1121423.JONT01000012_gene378	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-0099594_5	Pfam	PF01966	HD domain	HD
UHGV-0099594_5	COG	COG1078	HD superfamily phosphohydrolase	NA
UHGV-0099594_6	PHROG	phrog_435	endolysin	lysis
UHGV-0099594_6	UniRef90	UniRef90_A0A316LY78	SLH domain-containing protein	NA
UHGV-0099594_6	eggNOG-mapper	1410668.JNKC01000001_gene1911	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0099594_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0099594_6	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0099594_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0099594_7	PHROG	phrog_2523	NA	unknown function
UHGV-0099594_7	UniRef90	UniRef90_A0A316MC14	Addiction module toxin RelE	NA
UHGV-0099594_7	eggNOG-mapper	888060.HMPREF9081_2482	Toxin-antitoxin system, toxin component, RelE family	NA
UHGV-0099594_7	Pfam	PF05973	NA	Gp49
UHGV-0099594_7	COG	COG4679	Phage-related protein	NA
UHGV-0099594_7	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-0099594_8	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0099594_8	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0099594_8	UniRef90	UniRef90_A0A316LVA9	XRE family transcriptional regulator	NA
UHGV-0099594_8	eggNOG-mapper	138119.DSY3664	sequence-specific DNA binding	NA
UHGV-0099594_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0099594_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0099594_8	Structural annotation	PF01381, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0099594_9	KOfam	K09803	NA	NA
UHGV-0099594_9	PHROG	phrog_4399	ribonuclease toxin of AT system	moron, auxiliary metabolic gene and host takeover
UHGV-0099594_9	UniRef90	UniRef90_A0A3A8TWL9	BrnT family toxin	NA
UHGV-0099594_9	eggNOG-mapper	97138.C820_00269	Ribonuclease toxin, BrnT, of type II toxin-antitoxin system	NA
UHGV-0099594_9	Pfam	PF04365	Ribonuclease toxin, BrnT, of type II toxin-antitoxin system	BrnT_toxin
UHGV-0099594_9	COG	COG2929	NA	NA
UHGV-0099594_9	Structural annotation	PF04365, COG2929	NA	NA
UHGV-0099594_10	UniRef90	UniRef90_A0A374G2S7	Antitoxin	NA
UHGV-0099594_10	eggNOG-mapper	97138.C820_00268	BrnA antitoxin of type II toxin-antitoxin system	NA
UHGV-0099594_10	Pfam	PF14384	BrnA antitoxin of type II toxin-antitoxin system	BrnA_antitoxin
UHGV-0099594_10	COG	COG3514	NA	NA
UHGV-0099594_10	Structural annotation	PF12441, NF010302	NA	NA
UHGV-0099594_12	PHROG	phrog_1129	holin	lysis
UHGV-0099594_12	UniRef90	UniRef90_A0A316LUD8	Enolase (Fragment)	NA
UHGV-0099594_12	eggNOG-mapper	411473.RUMCAL_01944	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0099594_12	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0099594_12	Structural annotation	PF06946	NA	NA
UHGV-0099594_13	PHROG	phrog_9428	NA	unknown function
UHGV-0099594_13	UniRef90	UniRef90_A0A316LVP0	Serine/threonine protein kinase	NA
UHGV-0099594_13	eggNOG-mapper	1226322.HMPREF1545_03573	NA	NA
UHGV-0099594_15	PHROG	phrog_18725	NA	unknown function
UHGV-0099594_15	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0099594_15	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0099594_16	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0099594_16	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0099594_16	UniRef90	UniRef90_UPI0011CBF11F	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0099594_16	eggNOG-mapper	411460.RUMTOR_02081	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0099594_16	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0099594_16	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0099594_16	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0099594_17	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0099594_17	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0099594_17	UniRef90	UniRef90_A0A2V2CE24	HicB family protein	NA
UHGV-0099594_17	eggNOG-mapper	1122925.KB895394_gene1703	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0099594_17	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0099594_17	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0099594_17	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0099594_18	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0099594_18	PHROG	phrog_11157	NA	unknown function
UHGV-0099594_18	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0099594_18	eggNOG-mapper	33035.JPJF01000023_gene3227	NA	NA
UHGV-0099594_18	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0099594_18	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0099594_18	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0099594_18	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0099594_20	PHROG	phrog_13879	NA	unknown function
UHGV-0099594_20	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0099594_20	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0099594_21	PHROG	phrog_1194	NA	unknown function
UHGV-0099594_21	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0099594_21	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0099594_22	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0099594_22	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0099594_22	COG	COG1511	NA	NA
UHGV-0099594_22	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0099594_24	PHROG	phrog_706	NA	unknown function
UHGV-0099594_24	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0099594_24	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0099594_24	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0099594_24	Structural annotation	PF06854	NA	NA
UHGV-0099594_25	PHROG	phrog_11299	NA	unknown function
UHGV-0099594_25	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0099594_25	Structural annotation	PF10666	NA	NA
UHGV-0099594_26	PHROG	phrog_3099	NA	unknown function
UHGV-0099594_26	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0099594_26	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0099594_27	PHROG	phrog_3266	tail completion	connector
UHGV-0099594_27	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0099594_27	Structural annotation	PF12691	NA	NA
UHGV-0099594_28	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0099594_28	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0099594_28	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0099594_28	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0099594_28	Structural annotation	PF11114	NA	NA
UHGV-0099594_29	PHROG	phrog_3366	NA	unknown function
UHGV-0099594_29	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0099594_29	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0099594_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0099594_30	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0099594_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0099594_31	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0099594_31	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0099594_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0099594_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0099594_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0099594_31	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0099594_32	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0099594_32	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0099594_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0099594_33	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0099594_33	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0099594_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0099594_33	COG	COG2369	NA	NA
UHGV-0099594_33	Structural annotation	PF06152	NA	NA
UHGV-0099594_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0099594_34	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0099594_34	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0099594_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0099594_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0099594_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0099594_35	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0099594_35	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0099594_35	eggNOG-mapper	1000569.HMPREF1040_0200	Phage terminase, large subunit	NA
UHGV-0099594_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0099594_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0099594_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0099594_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0099594_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0099594_37	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0099594_37	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0099594_37	UniRef90	UniRef90_A0A134AF41	Methyltransferase	NA
UHGV-0099594_37	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0099594_37	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0099594_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0099594_37	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0099594_37	COG	COG0863	DNA modification methylase	NA
UHGV-0099594_37	Structural annotation	PF01555, PF02195, NF010253, TIGR00180, COG0863, COG5119	NA	NA
UHGV-0099594_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0099594_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0099594_38	UniRef90	UniRef90_UPI00095219E9	helix-turn-helix domain-containing protein	NA
UHGV-0099594_38	eggNOG-mapper	865861.AZSU01000002_gene2597	Transcriptional	NA
UHGV-0099594_38	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0099594_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0099594_39	PHROG	phrog_13999	NA	unknown function
UHGV-0099594_40	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0099594_40	UniRef90	UniRef90_UPI0004115370	methyltransferase	NA
UHGV-0099594_40	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0099594_40	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0099594_40	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0099594_40	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0099594_40	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0099594_41	PHROG	phrog_874	NA	unknown function
UHGV-0099594_41	UniRef90	UniRef90_A0A3P6JHM7	Upf86.8	NA
UHGV-0099594_41	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0099594_41	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0099594_42	PHROG	phrog_27197	NA	unknown function
UHGV-0099594_42	COG	COG5164	Transcription elongation factor SPT5	NA