UHGV-0099630

Genome information

Genome length 25,127 bps

CDS count 43

Completeness 58.67% (medium-quality)

geNomad score 0.9712

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099630
vOTU ID	vOTU-017297
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_217142
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9712
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-6.75
Jumbo phage	No

Genome content
Genome length	25,127 bps
GC content	53.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	90.78%
Average CDS length	534.91 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099630_1	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0099630_2	PHROG	phrog_28802	NA	unknown function
UHGV-0099630_3	PHROG	phrog_20016	NA	unknown function
UHGV-0099630_3	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0099630_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0099630_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0099630_4	PHROG	phrog_16490	NA	unknown function
UHGV-0099630_4	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0099630_5	PHROG	phrog_22984	NA	unknown function
UHGV-0099630_5	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0099630_6	PHROG	phrog_3754	NA	unknown function
UHGV-0099630_6	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0099630_8	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-0099630_8	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0099630_9	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0099630_9	PHROG	phrog_15001	endolysin	lysis
UHGV-0099630_9	UniRef90	UniRef90_UPI001F2F6630	peptidoglycan recognition protein family protein	NA
UHGV-0099630_9	eggNOG-mapper	552398.HMPREF0866_01156	Ami_2	NA
UHGV-0099630_9	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0099630_9	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0099630_9	Structural annotation	PF01510, MF_04111, COG5632	NA	NA
UHGV-0099630_11	PHROG	phrog_13256	NA	unknown function
UHGV-0099630_11	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0099630_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0099630_12	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0099630_12	COG	COG1511	NA	NA
UHGV-0099630_13	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0099630_13	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0099630_13	UniRef90	UniRef90_UPI00189C458E	phage antirepressor KilAC domain-containing protein	NA
UHGV-0099630_13	eggNOG-mapper	411470.RUMGNA_00784	BRO family, N-terminal domain	NA
UHGV-0099630_13	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0099630_13	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0099630_13	COG	COG3617	Prophage antirepressor	NA
UHGV-0099630_13	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0099630_15	UniRef90	UniRef90_A0A7M1Q4S5	Ribbon-helix-helix protein, CopG family	NA
UHGV-0099630_15	eggNOG-mapper	445971.ANASTE_00663	Ribbon-helix-helix protein, copG family	NA
UHGV-0099630_15	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0099630_16	PHROG	phrog_706	NA	unknown function
UHGV-0099630_16	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-0099630_16	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0099630_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0099630_16	Structural annotation	PF06854	NA	NA
UHGV-0099630_17	PHROG	phrog_11299	NA	unknown function
UHGV-0099630_17	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0099630_17	Structural annotation	PF10666	NA	NA
UHGV-0099630_18	PHROG	phrog_3099	NA	unknown function
UHGV-0099630_18	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0099630_18	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0099630_19	PHROG	phrog_3266	tail completion	connector
UHGV-0099630_19	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0099630_19	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0099630_19	Structural annotation	PF12691	NA	NA
UHGV-0099630_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0099630_20	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0099630_20	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0099630_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0099630_20	Structural annotation	PF11114	NA	NA
UHGV-0099630_21	PHROG	phrog_3366	NA	unknown function
UHGV-0099630_21	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0099630_21	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0099630_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0099630_22	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0099630_23	PHROG	phrog_34916	tail fiber protein	tail
UHGV-0099630_23	UniRef90	UniRef90_UPI0018A8F63F	collagen-like protein	NA
UHGV-0099630_23	eggNOG-mapper	585506.HMPREF0877_0863	Collagen triple helix repeat (20 copies)	NA
UHGV-0099630_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0099630_24	UniRef90	UniRef90_U2SBS0	Phage capsid family protein	NA
UHGV-0099630_24	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0099630_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0099630_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0099630_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0099630_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0099630_25	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0099630_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0099630_27	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0099630_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0099630_27	COG	COG2369	NA	NA
UHGV-0099630_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0099630_28	eggNOG-mapper	1232443.BAIA02000078_gene35	NA	NA
UHGV-0099630_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0099630_28	COG	COG2369	NA	NA
UHGV-0099630_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0099630_30	UniRef90	UniRef90_U2R2D2	Putative phage minor capsid protein	NA
UHGV-0099630_30	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0099630_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0099630_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0099630_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0099630_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0099630_31	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0099630_31	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0099630_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0099630_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0099630_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0099630_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0099630_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0099630_32	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0099630_32	UniRef90	UniRef90_A0A8J6MDX5	Helix-turn-helix domain-containing protein	NA
UHGV-0099630_32	eggNOG-mapper	1121091.AUMP01000003_gene2580	transposase activity	NA
UHGV-0099630_32	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0099630_32	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0099630_32	Structural annotation	PF07141	NA	NA
UHGV-0099630_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0099630_33	UniRef90	UniRef90_U2SK55	DNA-binding helix-turn-helix protein	NA
UHGV-0099630_33	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0099630_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0099630_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0099630_33	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0099630_34	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0099630_34	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0099630_34	UniRef90	UniRef90_A0A7X1ZLC9	dUTP diphosphatase	NA
UHGV-0099630_34	eggNOG-mapper	572547.Amico_1133	dUTP diphosphatase activity	NA
UHGV-0099630_34	Pfam	PF00692	dUTPase	dUTPase
UHGV-0099630_34	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0099630_35	KOfam	K07484	K07484; transposase	NA
UHGV-0099630_35	PHROG	phrog_688	transposase	integration and excision
UHGV-0099630_35	UniRef90	UniRef90_A0A645AW21	IS66 family transposase ISCce5	NA
UHGV-0099630_35	eggNOG-mapper	1449126.JQKL01000076_gene38	Transposase	NA
UHGV-0099630_35	Pfam	PF13007	Transposase C of IS166 homeodomain	LZ_Tnp_IS66
UHGV-0099630_35	Pfam	PF13005	zinc-finger binding domain of transposase IS66	zf-IS66
UHGV-0099630_35	Pfam	PF03050	Transposase IS66 family	DDE_Tnp_IS66
UHGV-0099630_35	Pfam	PF13817	IS66 C-terminal element	DDE_Tnp_IS66_C
UHGV-0099630_35	NCBIFam	NF033517.1	IS66 family transposase	NA
UHGV-0099630_35	COG	COG3316	Transposase (or an inactivated derivative), DDE domain	NA
UHGV-0099630_35	Structural annotation	PF03050, NF033517, COG3464	NA	NA
UHGV-0099630_36	KOfam	K07484	K07484; transposase	NA
UHGV-0099630_36	PHROG	phrog_623	transposase	integration and excision
UHGV-0099630_36	UniRef90	UniRef90_UPI001968548F	IS66 family insertion sequence element accessory protein TnpB	NA
UHGV-0099630_36	eggNOG-mapper	646529.Desaci_4271	PFAM IS66 Orf2 like protein	NA
UHGV-0099630_36	Pfam	PF05717	IS66 Orf2 like protein	TnpB_IS66
UHGV-0099630_36	NCBIFam	NF033819.0	IS66 family insertion sequence element accessory protein TnpB	NA
UHGV-0099630_36	COG	COG3436	Transposase	NA
UHGV-0099630_36	Structural annotation	PF05717, NF033819	NA	NA
UHGV-0099630_37	UniRef90	UniRef90_UPI000F055A8E	transposase	NA
UHGV-0099630_37	eggNOG-mapper	555088.DealDRAFT_1609	transposase activity	NA
UHGV-0099630_37	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0099630_37	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0099630_38	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0099630_38	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0099630_38	UniRef90	UniRef90_A0A3D3Y5Q7	dUTP diphosphatase	NA
UHGV-0099630_38	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-0099630_38	Pfam	PF00692	dUTPase	dUTPase
UHGV-0099630_38	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0099630_39	PHROG	phrog_95	integrase	integration and excision
UHGV-0099630_39	UniRef90	UniRef90_A0A357WXZ0	Recombinase family protein (Fragment)	NA
UHGV-0099630_39	eggNOG-mapper	1519439.JPJG01000033_gene1675	Resolvase, N terminal domain	NA
UHGV-0099630_39	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0099630_40	KOfam	K07096	NA	NA
UHGV-0099630_40	PHROG	phrog_1649	metallo-phosphoesterase	other
UHGV-0099630_40	UniRef90	UniRef90_A0A1Y4SZM0	Metallophosphatase	NA
UHGV-0099630_40	eggNOG-mapper	1232443.BAIA02000103_gene2982	Calcineurin-like phosphoesterase	NA
UHGV-0099630_40	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0099630_40	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0099630_40	Structural annotation	PF14582, MF_00905, TIGR03729, COG2129	NA	NA
UHGV-0099630_41	UniRef90	UniRef90_UPI001EDCB62C	imidazolonepropionase	NA
UHGV-0099630_41	eggNOG-mapper	411471.SUBVAR_06236	NA	NA
UHGV-0099630_41	Structural annotation	PF04218, NF040595, COG2771	NA	NA
UHGV-0099630_42	KOfam	K07497	K07497; putative transposase	NA
UHGV-0099630_42	PHROG	phrog_157	transposase	integration and excision
UHGV-0099630_42	UniRef90	UniRef90_UPI0010324124	IS3 family transposase	NA
UHGV-0099630_42	eggNOG-mapper	626939.HMPREF9443_02192	Integrase core domain	NA
UHGV-0099630_42	Pfam	PF13276	HTH-like domain	HTH_21
UHGV-0099630_42	Pfam	PF00665	Integrase core domain	rve
UHGV-0099630_42	Pfam	PF13333	Integrase core domain	rve_2
UHGV-0099630_42	NCBIFam	NF033516.0	IS3 family transposase	NA
UHGV-0099630_42	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0099630_42	Structural annotation	PF00665, PF13276, NF033516, COG2801	NA	NA