UHGV-0099643

Genome information

Genome length 41,569 bps

CDS count 49

Completeness 99.90% (high-quality)

geNomad score 0.9634

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099643
vOTU ID	vOTU-011466
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_227582
BioSample	SAMEA3708639
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9634
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	120.83
Jumbo phage	No

Genome content
Genome length	41,569 bps
GC content	45.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.44%
Average CDS length	788.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099643_1	Structural annotation	PF03895	NA	NA
UHGV-0099643_3	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0099643_3	UniRef90	UniRef90_UPI0018D58E1D	phage terminase large subunit	NA
UHGV-0099643_3	eggNOG-mapper	910314.HMPREF9220_0713	chromosome segregation	NA
UHGV-0099643_3	NCBIFam	NF033889.1	phage terminase large subunit	NA
UHGV-0099643_3	COG	COG5410	NA	NA
UHGV-0099643_3	HAMAP	MF_04147	Terminase, large subunit	NA
UHGV-0099643_3	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0099643_5	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0099643_5	PHROG	phrog_894	endolysin	lysis
UHGV-0099643_5	UniRef90	UniRef90_A0A316S4M0	Peptidase M15	NA
UHGV-0099643_5	eggNOG-mapper	2754.EH55_01340	Peptidase M15	NA
UHGV-0099643_5	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0099643_5	COG	COG3108	NA	NA
UHGV-0099643_5	Structural annotation	PF08291, NF000086, COG3108	NA	NA
UHGV-0099643_6	PHROG	phrog_920	holin	lysis
UHGV-0099643_6	UniRef90	UniRef90_A0A1M6NKZ0	Phage holin T7 family, holin superfamily II	NA
UHGV-0099643_6	Pfam	PF10746	Phage holin T7 family, holin superfamily II	Phage_holin_2_2
UHGV-0099643_9	PHROG	phrog_6256	tail fiber protein	tail
UHGV-0099643_9	UniRef90	UniRef90_UPI001032A2DE	phage tail fiber protein	NA
UHGV-0099643_9	eggNOG-mapper	910314.HMPREF9220_0720	Phage T7 tail fibre protein	NA
UHGV-0099643_9	Pfam	PF03906	Phage T7 tail fibre protein	Phage_T7_tail
UHGV-0099643_10	PHROG	phrog_9854	NA	unknown function
UHGV-0099643_10	UniRef90	UniRef90_A0A259UTX8	LPD38 domain-containing protein	NA
UHGV-0099643_10	eggNOG-mapper	696281.Desru_1103	Tfp pilus assembly protein FimV	NA
UHGV-0099643_10	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0099643_10	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-0099643_11	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0099643_11	UniRef90	UniRef90_UPI001032D93E	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0099643_11	eggNOG-mapper	1262914.BN533_00637	NA	NA
UHGV-0099643_11	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0099643_11	Structural annotation	PF08291, MF_04122	NA	NA
UHGV-0099643_12	PHROG	phrog_805	internal virion protein	head and packaging
UHGV-0099643_12	eggNOG-mapper	1262914.BN533_00636	NA	NA
UHGV-0099643_12	Structural annotation	PF05384, TIGR02559, COG5034	NA	NA
UHGV-0099643_13	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0099643_13	UniRef90	UniRef90_UPI001032F868	NA	NA
UHGV-0099643_13	eggNOG-mapper	461711.G8EYE2_9CAUD	NA	NA
UHGV-0099643_13	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-0099643_13	Structural annotation	PF11090, MF_02210, NF040502, COG1247	NA	NA
UHGV-0099643_14	PHROG	phrog_457	tail protein	tail
UHGV-0099643_14	UniRef90	UniRef90_A0A2Z2U7S2	Putative tail tubular protein B	NA
UHGV-0099643_14	eggNOG-mapper	910314.HMPREF9220_0725	NA	NA
UHGV-0099643_14	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-0099643_15	PHROG	phrog_446	tail protein	tail
UHGV-0099643_15	UniRef90	UniRef90_UPI0015593CFE	phage tail protein	NA
UHGV-0099643_15	eggNOG-mapper	910314.HMPREF9220_0726	Tail tubular protein	NA
UHGV-0099643_15	Pfam	PF17212	Tail tubular protein	Tube
UHGV-0099643_15	Structural annotation	PF17212	NA	NA
UHGV-0099643_16	PHROG	phrog_267	major head protein	head and packaging
UHGV-0099643_16	UniRef90	UniRef90_UPI001032B69C	phage capsid protein	NA
UHGV-0099643_16	eggNOG-mapper	910314.HMPREF9220_0727	NA	NA
UHGV-0099643_16	Pfam	PF21703	Major capsid protein	Gp10A-like
UHGV-0099643_16	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0099643_17	PHROG	phrog_1052	head assembly	head and packaging
UHGV-0099643_17	UniRef90	UniRef90_A0A1M6MGQ8	Phage T7 capsid assembly protein	NA
UHGV-0099643_17	eggNOG-mapper	910314.HMPREF9220_0728	Phage T7 capsid assembly protein	NA
UHGV-0099643_17	Pfam	PF05396	Phage T7 capsid assembly protein	Phage_T7_Capsid
UHGV-0099643_17	Structural annotation	PF05396	NA	NA
UHGV-0099643_18	PHROG	phrog_449	head-tail adaptor	connector
UHGV-0099643_18	UniRef90	UniRef90_UPI001032C2A5	portal protein	NA
UHGV-0099643_18	eggNOG-mapper	910314.HMPREF9220_0729	Bacteriophage head to tail connecting protein	NA
UHGV-0099643_18	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0099643_18	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0099643_20	UniRef90	UniRef90_UPI0010329CDC	NA	NA
UHGV-0099643_20	Pfam	PF17570	Bacteriophage T7-like, protein 6.7	T7-like_gp67
UHGV-0099643_22	KOfam	K21526	Gp6; exonuclease [EC:3.1.11.3]	NA
UHGV-0099643_22	PHROG	phrog_107	RNaseH	DNA, RNA and nucleotide metabolism
UHGV-0099643_22	UniRef90	UniRef90_UPI001032BBCA	exonuclease	NA
UHGV-0099643_22	eggNOG-mapper	910314.HMPREF9220_0733	nuclease activity	NA
UHGV-0099643_22	Pfam	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain	5_3_exonuc_N
UHGV-0099643_22	COG	COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	NA
UHGV-0099643_22	Structural annotation	PF02739, MF_04140, NF011544, COG0258	NA	NA
UHGV-0099643_24	KOfam	K18951	gp30; DNA ligase [EC:6.5.1.1]	NA
UHGV-0099643_24	PHROG	phrog_114	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0099643_24	UniRef90	UniRef90_A0A316SF06	DNA_LIGASE_A3 domain-containing protein	NA
UHGV-0099643_24	eggNOG-mapper	329254.Q2NPG1_9CAUD	DNA ligase (ATP) activity	NA
UHGV-0099643_24	Pfam	PF01068	ATP dependent DNA ligase domain	DNA_ligase_A_M
UHGV-0099643_24	Pfam	PF14743	DNA ligase OB-like domain	DNA_ligase_OB_2
UHGV-0099643_24	Structural annotation	PF01068, PF14743, MF_00407, NF006592, COG1793	NA	NA
UHGV-0099643_25	KOfam	K17892	FTRC; ferredoxin-thioredoxin reductase catalytic chain [EC:1.8.7.2]	NA
UHGV-0099643_25	UniRef90	UniRef90_A0A316S2X1	Ferredoxin:thioredoxin reductase	NA
UHGV-0099643_25	eggNOG-mapper	192952.MM_0057	Ferredoxin thioredoxin reductase catalytic beta chain	NA
UHGV-0099643_25	Pfam	PF02943	Ferredoxin thioredoxin reductase catalytic beta chain	FeThRed_B
UHGV-0099643_25	COG	COG4802	Ferredoxin-thioredoxin reductase, catalytic subunit	NA
UHGV-0099643_28	PHROG	phrog_22529	NA	unknown function
UHGV-0099643_28	UniRef90	UniRef90_UPI001032B2DE	3D domain-containing protein	NA
UHGV-0099643_28	eggNOG-mapper	1410622.JNKY01000010_gene1282	3D domain	NA
UHGV-0099643_28	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0099643_28	Structural annotation	PF06725, COG3584	NA	NA
UHGV-0099643_29	KOfam	K21238	Gp5; T7 DNA-directed DNA polymerase [EC:2.7.7.7]	NA
UHGV-0099643_29	PHROG	phrog_15971	DNA polymerase I	DNA, RNA and nucleotide metabolism
UHGV-0099643_29	UniRef90	UniRef90_UPI001032CBA3	DNA polymerase	NA
UHGV-0099643_29	eggNOG-mapper	910314.HMPREF9220_0734	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0099643_29	Pfam	PF13482	RNase_H superfamily	RNase_H_2
UHGV-0099643_29	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0099643_29	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0099643_29	Structural annotation	PF00476, PF13482, MF_04101, NF004397, COG0749	NA	NA
UHGV-0099643_31	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-0099643_31	PHROG	phrog_25611	anaerobic ribonucleoside reductase large subunit	DNA, RNA and nucleotide metabolism
UHGV-0099643_31	UniRef90	UniRef90_UPI0010328667	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0099643_31	eggNOG-mapper	1250005.PHEL85_1084	Ribonucleoside-triphosphate reductase	NA
UHGV-0099643_31	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0099643_31	NCBIFam	TIGR02827.1	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0099643_31	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0099643_31	Structural annotation	PF13597, MF_04027, TIGR02827, COG1328	NA	NA
UHGV-0099643_32	UniRef90	UniRef90_A0A413R0N4	4Fe-4S cluster-binding domain-containing protein	NA
UHGV-0099643_32	eggNOG-mapper	1064535.MELS_1941	queuosine metabolic process	NA
UHGV-0099643_32	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-0099643_32	Structural annotation	PF13353, MF_00917, TIGR02826, COG1180	NA	NA
UHGV-0099643_33	KOfam	K21502	Gp4; DNA primase/helicase [EC:2.7.7.- 5.6.2.3]	NA
UHGV-0099643_33	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0099643_33	UniRef90	UniRef90_UPI001032CE48	AAA family ATPase	NA
UHGV-0099643_33	eggNOG-mapper	910314.HMPREF9220_0737	DNA primase activity	NA
UHGV-0099643_33	Pfam	PF21268	Bacteriophage T7 DNA helicase/primase, N-terminal a+b fold	Helic-prim_T7_N
UHGV-0099643_33	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0099643_33	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0099643_33	COG	COG0305	Replicative DNA helicase	NA
UHGV-0099643_33	HAMAP	MF_04154	DNA helicase/primase [4]	NA
UHGV-0099643_33	Structural annotation	PF03796, PF21268, MF_04154, NF005424, TIGR01391, COG0305	NA	NA
UHGV-0099643_34	KOfam	K21525	Gp3; endonuclease I [EC:3.1.21.2]	NA
UHGV-0099643_34	PHROG	phrog_945	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0099643_34	UniRef90	UniRef90_UPI001032AD6B	endonuclease I	NA
UHGV-0099643_34	eggNOG-mapper	110457.Q9T133_9CAUD	deoxyribonuclease IV (phage-T4-induced) activity	NA
UHGV-0099643_34	Pfam	PF05367	Phage endonuclease I	Phage_endo_I
UHGV-0099643_34	Structural annotation	PF05367, TIGR04256, COG4998	NA	NA
UHGV-0099643_35	KOfam	K25280	gp2.5, ssb; T7 single-stranded DNA-binding protein	NA
UHGV-0099643_35	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0099643_35	UniRef90	UniRef90_UPI0010327CA7	NA	NA
UHGV-0099643_35	eggNOG-mapper	665942.HMPREF1022_03263	NA	NA
UHGV-0099643_35	Pfam	PF21265	Single-stranded DNA-binding protein, Bacteriophage T7	SBB_T7
UHGV-0099643_35	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0099643_36	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0099643_36	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0099643_36	UniRef90	UniRef90_UPI0010329BEF	dUTP diphosphatase	NA
UHGV-0099643_36	eggNOG-mapper	1284686.HMPREF1630_09220	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0099643_36	Pfam	PF00692	dUTPase	dUTPase
UHGV-0099643_36	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0099643_36	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0099643_36	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0099643_38	PHROG	phrog_236	nucleotide kinase	other
UHGV-0099643_38	UniRef90	UniRef90_UPI001032B1DE	NA	NA
UHGV-0099643_38	eggNOG-mapper	1234593.ANBY01000020_gene1347	NA	NA
UHGV-0099643_38	Pfam	PF11753	NA	DUF3310
UHGV-0099643_38	Structural annotation	PF11753, PF18350	NA	NA
UHGV-0099643_39	KOfam	K21313	1; T7 RNA polymerase [EC:2.7.7.6]	NA
UHGV-0099643_39	PHROG	phrog_414	RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0099643_39	UniRef90	UniRef90_A0A316S4Q1	DNA-directed RNA polymerase	NA
UHGV-0099643_39	eggNOG-mapper	910314.HMPREF9220_0743	dna-directed rna polymerase	NA
UHGV-0099643_39	Pfam	PF14700	DNA-directed RNA polymerase N-terminal	RPOL_N
UHGV-0099643_39	Pfam	PF00940	DNA-dependent RNA polymerase	RNA_pol
UHGV-0099643_39	COG	COG5108	Mitochondrial DNA-directed RNA polymerase	NA
UHGV-0099643_39	Structural annotation	PF00940, PF14700, NF011539, COG5108	NA	NA
UHGV-0099643_41	eggNOG-mapper	1121100.JCM6294_3864	NA	NA
UHGV-0099643_44	PHROG	phrog_2059	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-0099643_44	UniRef90	UniRef90_UPI001032A15B	antirestriction protein ArdA	NA
UHGV-0099643_44	eggNOG-mapper	537013.CLOSTMETH_02172	Antirestriction protein (ArdA)	NA
UHGV-0099643_44	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-0099643_44	dbAPIS	APIS003	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	NA
UHGV-0099643_44	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0099643_44	Structural annotation	PF07275, COG4734	NA	NA
UHGV-0099643_49	KOfam	K14059	int; integrase	NA
UHGV-0099643_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0099643_49	UniRef90	UniRef90_UPI001032F090	site-specific integrase	NA
UHGV-0099643_49	eggNOG-mapper	1262914.BN533_00632	Belongs to the 'phage' integrase family	NA
UHGV-0099643_49	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0099643_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0099643_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0099643_49	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA