UHGV-0099644

Genome information

Genome length 23,141 bps

CDS count 25

Completeness 76.15% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099644
vOTU ID	vOTU-018547
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_227580
BioSample	SAMEA3708639
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	Yes

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.21
Jumbo phage	No

Genome content
Genome length	23,141 bps
GC content	32.21%
Genetic code	Blepharisma nuclear code (15)
CDS count	25
CDS density	95.17%
Average CDS length	885.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099644_2	eggNOG-mapper	585543.HMPREF0969_03538	NA	NA
UHGV-0099644_4	PHROG	phrog_17422	NA	unknown function
UHGV-0099644_4	eggNOG-mapper	908937.Prede_1342	NA	NA
UHGV-0099644_4	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0099644_5	UniRef90	UniRef90_A0A0D9NGQ3	Secretion protein	NA
UHGV-0099644_5	eggNOG-mapper	1236517.BAKO01000013_gene1450	NA	NA
UHGV-0099644_5	Structural annotation	PF05113, TIGR03361, COG4379	NA	NA
UHGV-0099644_6	PHROG	phrog_21917	NA	unknown function
UHGV-0099644_6	eggNOG-mapper	1122931.AUAE01000036_gene1067	domain protein	NA
UHGV-0099644_6	COG	COG5283	Phage-related tail protein	NA
UHGV-0099644_8	eggNOG-mapper	908937.Prede_1347	NA	NA
UHGV-0099644_9	PHROG	phrog_1407	major tail protein	tail
UHGV-0099644_9	UniRef90	UniRef90_UPI001F204862	phage tail protein	NA
UHGV-0099644_9	eggNOG-mapper	908937.Prede_1348	Phage tail tube protein	NA
UHGV-0099644_9	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0099644_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0099644_10	UniRef90	UniRef90_UPI000C189777	NA	NA
UHGV-0099644_10	eggNOG-mapper	908937.Prede_1349	NA	NA
UHGV-0099644_10	Pfam	PF11367	NA	DUF3168
UHGV-0099644_10	Structural annotation	PF11367, COG5003	NA	NA
UHGV-0099644_11	eggNOG-mapper	1347393.HG726020_gene892	NA	NA
UHGV-0099644_11	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0099644_12	PHROG	phrog_25	head closure Hc1	connector
UHGV-0099644_12	UniRef90	UniRef90_F9D2Z9	Bacteriophage head-tail adaptor	NA
UHGV-0099644_12	eggNOG-mapper	908937.Prede_1351	Phage head-tail joining protein	NA
UHGV-0099644_12	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0099644_12	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0099644_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0099644_13	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0099644_13	UniRef90	UniRef90_A0A646HBR7	Phage gp6-like head-tail connector protein	NA
UHGV-0099644_13	eggNOG-mapper	908937.Prede_1352	Phage gp6-like head-tail connector protein	NA
UHGV-0099644_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0099644_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0099644_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0099644_14	PHROG	phrog_617	major head protein	head and packaging
UHGV-0099644_14	UniRef90	UniRef90_A0A3R6IXJ0	Phage major capsid protein	NA
UHGV-0099644_14	eggNOG-mapper	908937.Prede_1353	Phage capsid family	NA
UHGV-0099644_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0099644_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0099644_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0099644_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0099644_15	KOfam	K06904	NA	NA
UHGV-0099644_15	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0099644_15	UniRef90	UniRef90_A0A496C2C5	HK97 family phage prohead protease	NA
UHGV-0099644_15	eggNOG-mapper	908937.Prede_1354	Caudovirus prohead serine protease	NA
UHGV-0099644_15	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0099644_15	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0099644_15	COG	COG3740	Phage head maturation protease	NA
UHGV-0099644_15	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0099644_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0099644_16	UniRef90	UniRef90_F9D303	HK97 family phage portal protein	NA
UHGV-0099644_16	eggNOG-mapper	908937.Prede_1355	Phage portal protein	NA
UHGV-0099644_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0099644_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0099644_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0099644_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0099644_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0099644_17	UniRef90	UniRef90_D7IS84	Phage terminase large subunit	NA
UHGV-0099644_17	eggNOG-mapper	1122931.AUAE01000036_gene1072	Phage Terminase	NA
UHGV-0099644_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0099644_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0099644_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0099644_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0099644_18	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0099644_18	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0099644_18	UniRef90	UniRef90_A0A2A4V825	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0099644_18	eggNOG-mapper	641526.ADIWIN_2664	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0099644_18	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0099644_18	Structural annotation	PF02086, MF_01012, TIGR00571, COG0338	NA	NA
UHGV-0099644_19	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0099644_19	UniRef90	UniRef90_D7IS85	Phage terminase, small subunit, P27 family	NA
UHGV-0099644_19	eggNOG-mapper	1122931.AUAE01000036_gene1073	Phage terminase, small subunit	NA
UHGV-0099644_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0099644_19	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0099644_19	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0099644_20	UniRef90	UniRef90_A0A646HAN7	Ribbon-helix-helix domain-containing protein	NA
UHGV-0099644_20	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0099644_20	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0099644_22	UniRef90	UniRef90_UPI00051B04F9	DEAD/DEAH box helicase family protein	NA
UHGV-0099644_22	eggNOG-mapper	226186.BT_2983	NA	NA
UHGV-0099644_22	Structural annotation	PF02399, MF_00965, TIGR00614, COG1201	NA	NA
UHGV-0099644_23	Structural annotation	PF12187, MF_01490, NF040854, COG1591	NA	NA