UHGV-0099673

Genome information

Genome length 23,721 bps

CDS count 27

Completeness 61.78% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099673
vOTU ID	vOTU-036517
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_225805
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.08
Jumbo phage	No

Genome content
Genome length	23,721 bps
GC content	41.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	27
CDS density	93.31%
Average CDS length	822.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099673_1	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0099673_1	UniRef90	UniRef90_UPI0012BBE7C9	NA	NA
UHGV-0099673_1	eggNOG-mapper	1123315.AUIP01000003_gene242	NA	NA
UHGV-0099673_1	Pfam	PF14265	NA	DUF4355
UHGV-0099673_1	Structural annotation	PF14265	NA	NA
UHGV-0099673_2	PHROG	phrog_909	major head protein	head and packaging
UHGV-0099673_2	UniRef90	UniRef90_A0A2X3UEG8	Phage structural protein	NA
UHGV-0099673_2	eggNOG-mapper	1123315.AUIP01000003_gene243	NA	NA
UHGV-0099673_2	Structural annotation	PF02924	NA	NA
UHGV-0099673_3	PHROG	phrog_29	major head protein	head and packaging
UHGV-0099673_3	UniRef90	UniRef90_UPI0012BD5E4A	major capsid protein	NA
UHGV-0099673_3	eggNOG-mapper	85154.O34062_BPO12	Phage major capsid protein E	NA
UHGV-0099673_3	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0099673_3	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0099673_4	PHROG	phrog_5279	NA	unknown function
UHGV-0099673_4	UniRef90	UniRef90_O34063	ORF32	NA
UHGV-0099673_5	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0099673_5	UniRef90	UniRef90_UPI0012BD50BC	phage head-tail connector protein	NA
UHGV-0099673_5	eggNOG-mapper	1123302.KB904182_gene68	Phage gp6-like head-tail connector protein	NA
UHGV-0099673_5	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0099673_5	Structural annotation	PF05135	NA	NA
UHGV-0099673_6	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0099673_6	UniRef90	UniRef90_O34065	ORF34	NA
UHGV-0099673_6	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0099673_7	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0099673_7	UniRef90	UniRef90_UPI001581B264	HK97 gp10 family phage protein	NA
UHGV-0099673_7	eggNOG-mapper	682370.C9W9I3_9CAUD	exonuclease activity	NA
UHGV-0099673_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0099673_7	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0099673_7	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0099673_8	PHROG	phrog_176	tail terminator	connector
UHGV-0099673_8	UniRef90	UniRef90_UPI0019D57AB9	NA	NA
UHGV-0099673_8	eggNOG-mapper	306323.Q56S92_9CAUD	NA	NA
UHGV-0099673_8	Structural annotation	PF11367	NA	NA
UHGV-0099673_9	PHROG	phrog_238	major tail protein	tail
UHGV-0099673_9	UniRef90	UniRef90_UPI0012BD016F	phage major tail protein, TP901-1 family	NA
UHGV-0099673_9	eggNOG-mapper	1385385.U6E9D4_9CAUD	Phage major tail protein 2	NA
UHGV-0099673_9	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0099673_9	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0099673_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0099673_10	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0099673_10	UniRef90	UniRef90_O34069	ORF38	NA
UHGV-0099673_10	eggNOG-mapper	85154.O34069_BPO12	Pfam:Phage_TAC_12	NA
UHGV-0099673_10	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0099673_10	Structural annotation	PF12363	NA	NA
UHGV-0099673_11	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0099673_11	UniRef90	UniRef90_O34070	ORF39	NA
UHGV-0099673_12	PHROG	phrog_1204	tail protein	tail
UHGV-0099673_12	UniRef90	UniRef90_UPI00189FCAB6	tape measure protein	NA
UHGV-0099673_12	eggNOG-mapper	85154.O34071_BPO12	peptidoglycan catabolic process	NA
UHGV-0099673_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0099673_12	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0099673_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0099673_13	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0099673_13	UniRef90	UniRef90_UPI001C02C7FE	phage tail family protein	NA
UHGV-0099673_13	eggNOG-mapper	78541.O80180_9CAUD	Phage tail protein	NA
UHGV-0099673_13	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0099673_13	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0099673_13	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0099673_14	KOfam	K06823	COL18A; collagen type XVIII alpha	NA
UHGV-0099673_14	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0099673_14	UniRef90	UniRef90_UPI00158299B3	phage tail protein	NA
UHGV-0099673_14	eggNOG-mapper	682370.C9W9J0_9CAUD	peptidoglycan catabolic process	NA
UHGV-0099673_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0099673_14	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0099673_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0099673_14	Structural annotation	PF14594, PF19081, TIGR01665, TIGR04488, COG4926	NA	NA
UHGV-0099673_15	PHROG	phrog_372	tail protein	tail
UHGV-0099673_15	UniRef90	UniRef90_UPI001D0A9119	NA	NA
UHGV-0099673_15	eggNOG-mapper	90410.Q9XJB2_9CAUD	NA	NA
UHGV-0099673_15	Pfam	PF05895	NA	DUF859
UHGV-0099673_15	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0099673_16	PHROG	phrog_199	holin	lysis
UHGV-0099673_16	UniRef90	UniRef90_A0A2A5QG13	Holin	NA
UHGV-0099673_16	eggNOG-mapper	1051631.F8HGP0_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-0099673_16	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0099673_16	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0099673_16	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0099673_17	PHROG	phrog_6487	NA	unknown function
UHGV-0099673_17	UniRef90	UniRef90_A0A3S4LRZ3	NA	NA
UHGV-0099673_17	eggNOG-mapper	999425.HMPREF9186_02053	NA	NA
UHGV-0099673_17	Structural annotation	PF19077, NF032891, COG5456	NA	NA
UHGV-0099673_18	PHROG	phrog_4757	NA	unknown function
UHGV-0099673_18	UniRef90	UniRef90_A0A150NVR4	NA	NA
UHGV-0099673_20	PHROG	phrog_33625	holin	lysis
UHGV-0099673_20	UniRef90	UniRef90_A0A8B4HY27	Lin2375 protein	NA
UHGV-0099673_20	eggNOG-mapper	1297534.CAUJ01000005_gene166	Holin, phage phi LC3 family	NA
UHGV-0099673_20	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0099673_20	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0099673_20	COG	COG5546	NA	NA
UHGV-0099673_20	Structural annotation	COG5546	NA	NA
UHGV-0099673_21	PHROG	phrog_998	endolysin	lysis
UHGV-0099673_21	UniRef90	UniRef90_A0A2A5QFQ2	Lysin	NA
UHGV-0099673_21	eggNOG-mapper	936154.STP_1586	lysozyme activity	NA
UHGV-0099673_21	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0099673_21	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0099673_21	Structural annotation	PF05382, PF18341, NF033742, COG0791, COG4991	NA	NA
UHGV-0099673_22	UniRef90	UniRef90_A0A564TQW9	N-terminal Ras-GEF domain-containing protein	NA
UHGV-0099673_23	PHROG	phrog_4964	NA	unknown function
UHGV-0099673_23	UniRef90	UniRef90_A0A1F2H8S5	Elongation factor G	NA
UHGV-0099673_24	KOfam	K14059	int; integrase	NA
UHGV-0099673_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0099673_24	UniRef90	UniRef90_A0A564TG11	Tyrosine recombinase XerC	NA
UHGV-0099673_24	eggNOG-mapper	646413.C5IUL7_9CAUD	Phage integrase family	NA
UHGV-0099673_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0099673_24	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0099673_25	UniRef90	UniRef90_UPI001C1ED5DA	PIN domain-containing protein	NA
UHGV-0099673_25	Pfam	PF01850	PIN domain	PIN
UHGV-0099673_25	COG	COG1487	Ribonuclease/mRNA interferase VapC, contains PIN domain	NA
UHGV-0099673_25	Structural annotation	PF01850, MF_00265, NF010285, COG1848	NA	NA
UHGV-0099673_26	UniRef90	UniRef90_UPI001C1F198E	NA	NA
UHGV-0099673_26	eggNOG-mapper	1244869.H261_21226	NA	NA
UHGV-0099673_26	Pfam	PF14213	NA	DUF4325
UHGV-0099673_26	Structural annotation	PF14213	NA	NA
UHGV-0099673_27	PHROG	phrog_3364	NA	unknown function
UHGV-0099673_27	UniRef90	UniRef90_UPI001C1EECF0	ATP-binding protein	NA
UHGV-0099673_27	eggNOG-mapper	1227266.HMPREF1551_00184	Histidine kinase	NA
UHGV-0099673_27	COG	COG0642	Signal transduction histidine kinase	NA