UHGV-0099700

Genome information

Genome length 36,179 bps

CDS count 57

Completeness 95.95% (high-quality)

geNomad score 0.9641

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099700
vOTU ID	vOTU-065394
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_220477
BioSample	SAMEA3541541
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.95% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9641
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.45
Jumbo phage	No

Genome content
Genome length	36,179 bps
GC content	27.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	88.74%
Average CDS length	565.26 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099700_1	KOfam	K14059	int; integrase	NA
UHGV-0099700_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0099700_1	UniRef90	UniRef90_A0A1T4N800	Site-specific recombinase XerD	NA
UHGV-0099700_1	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-0099700_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0099700_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0099700_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0099700_1	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0099700_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0099700_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0099700_2	UniRef90	UniRef90_R6P1W8	Putative repressor LexA	NA
UHGV-0099700_2	eggNOG-mapper	1203606.HMPREF1526_00998	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0099700_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0099700_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0099700_2	Structural annotation	PF00717, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0099700_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0099700_3	UniRef90	UniRef90_K1UCD0	Repressor LexA	NA
UHGV-0099700_3	eggNOG-mapper	595536.ADVE02000001_gene1856	Helix-turn-helix	NA
UHGV-0099700_3	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0099700_3	COG	COG1426	NA	NA
UHGV-0099700_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0099700_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0099700_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0099700_5	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0099700_8	PHROG	phrog_7566	NA	unknown function
UHGV-0099700_10	PHROG	phrog_2329	NA	unknown function
UHGV-0099700_10	UniRef90	UniRef90_UPI001D121EDC	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0099700_10	eggNOG-mapper	1151292.QEW_0754	NA	NA
UHGV-0099700_10	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-0099700_12	PHROG	phrog_11769	NA	unknown function
UHGV-0099700_12	UniRef90	UniRef90_R6WQA7	DnaD and phage-associated domain protein	NA
UHGV-0099700_12	eggNOG-mapper	1123302.KB904164_gene705	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0099700_12	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0099700_12	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0099700_12	Structural annotation	PF09681, PF07261, TIGR01714, COG3935	NA	NA
UHGV-0099700_13	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0099700_13	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0099700_13	UniRef90	UniRef90_A0A1Q6K3G5	DNA helicase	NA
UHGV-0099700_13	eggNOG-mapper	289376.THEYE_A0337	Participates in initiation and elongation during chromosome replication	NA
UHGV-0099700_13	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0099700_13	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0099700_13	COG	COG0305	Replicative DNA helicase	NA
UHGV-0099700_13	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0099700_21	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0099700_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0099700_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0099700_25	UniRef90	UniRef90_R7ITW3	Phage terminase small subunit	NA
UHGV-0099700_25	eggNOG-mapper	1304866.K413DRAFT_0812	Terminase small subunit	NA
UHGV-0099700_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0099700_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0099700_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0099700_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0099700_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0099700_26	UniRef90	UniRef90_A0A1Q6LGZ0	Terminase	NA
UHGV-0099700_26	eggNOG-mapper	552396.HMPREF0863_01628	Phage terminase, large subunit, PBSX family	NA
UHGV-0099700_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0099700_26	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0099700_27	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0099700_27	UniRef90	UniRef90_UPI0013ED9517	NA	NA
UHGV-0099700_27	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0099700_27	Pfam	PF14359	NA	DUF4406
UHGV-0099700_27	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0099700_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0099700_28	UniRef90	UniRef90_R7FBF4	Putative phage minor capsid protein	NA
UHGV-0099700_28	eggNOG-mapper	1294142.CINTURNW_1024	NA	NA
UHGV-0099700_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0099700_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0099700_29	UniRef90	UniRef90_UPI001D086335	minor capsid protein	NA
UHGV-0099700_29	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0099700_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0099700_29	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0099700_30	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0099700_30	UniRef90	UniRef90_A0A7V6TM88	HNHc domain-containing protein	NA
UHGV-0099700_30	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0099700_30	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0099700_30	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0099700_30	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0099700_30	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0099700_31	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0099700_31	UniRef90	UniRef90_A0A1Q6LE81	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0099700_31	eggNOG-mapper	1151292.QEW_3259	Phage Mu protein F like protein	NA
UHGV-0099700_31	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0099700_31	COG	COG2369	NA	NA
UHGV-0099700_33	PHROG	phrog_10292	NA	unknown function
UHGV-0099700_33	UniRef90	UniRef90_A0A3D2MBJ3	TM2 domain-containing protein	NA
UHGV-0099700_33	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-0099700_33	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0099700_33	Pfam	PF05154	TM2 domain	TM2
UHGV-0099700_33	COG	COG2314	NA	NA
UHGV-0099700_33	Structural annotation	PF05154, PF12773, MF_00788, NF003161	NA	NA
UHGV-0099700_35	PHROG	phrog_422	major head protein	head and packaging
UHGV-0099700_35	UniRef90	UniRef90_A0A1Q6LIQ2	Phage capsid protein	NA
UHGV-0099700_35	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0099700_35	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0099700_37	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0099700_37	eggNOG-mapper	1262449.CP6013_3201	NA	NA
UHGV-0099700_38	PHROG	phrog_8710	NA	unknown function
UHGV-0099700_38	eggNOG-mapper	1282664.H354_06676	NA	NA
UHGV-0099700_38	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0099700_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0099700_39	eggNOG-mapper	585501.HMPREF6123_0831	NA	NA
UHGV-0099700_40	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0099700_40	UniRef90	UniRef90_UPI0016BCEC89	minor capsid protein	NA
UHGV-0099700_40	eggNOG-mapper	1151292.QEW_2427	NA	NA
UHGV-0099700_40	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0099700_40	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0099700_41	PHROG	phrog_820	major tail protein	tail
UHGV-0099700_41	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0099700_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0099700_42	PHROG	phrog_8300	NA	unknown function
UHGV-0099700_42	eggNOG-mapper	1123263.AUKY01000051_gene1073	NA	NA
UHGV-0099700_42	Structural annotation	PF06896	NA	NA
UHGV-0099700_43	UniRef90	UniRef90_UPI00040B248B	Gp15 family bacteriophage protein	NA
UHGV-0099700_43	eggNOG-mapper	394503.Ccel_3283	Bacteriophage Gp15 protein	NA
UHGV-0099700_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0099700_43	Structural annotation	PF06854	NA	NA
UHGV-0099700_44	UniRef90	UniRef90_R7F982	Conserved domain protein	NA
UHGV-0099700_44	eggNOG-mapper	573061.Clocel_0220	Mu-like prophage protein Com	NA
UHGV-0099700_44	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0099700_45	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0099700_45	UniRef90	UniRef90_A0A174SV65	Phage-like protein	NA
UHGV-0099700_45	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0099700_45	Pfam	PF05017	TMP repeat	TMP
UHGV-0099700_45	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0099700_45	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0099700_46	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0099700_47	PHROG	phrog_6616	tail protein	tail
UHGV-0099700_47	UniRef90	UniRef90_R6H354	Carbohydrate binding domain protein	NA
UHGV-0099700_47	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0099700_47	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-0099700_51	PHROG	phrog_18955	NA	unknown function
UHGV-0099700_51	UniRef90	UniRef90_R7FGU9	Peptidoglycan-binding domain 1 protein	NA
UHGV-0099700_51	eggNOG-mapper	1121422.AUMW01000009_gene3264	Papain-like cysteine protease AvrRpt2	NA
UHGV-0099700_51	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0099700_51	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0099700_51	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0099700_51	Structural annotation	PF03412, PF08239, PF18341, NF040678, NF033920, COG4991, COG4990	NA	NA
UHGV-0099700_54	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0099700_54	Structural annotation	PF09388	NA	NA
UHGV-0099700_56	KOfam	K11991	tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]	NA
UHGV-0099700_56	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0099700_56	UniRef90	UniRef90_A0A1Q6LHC5	tRNA-specific adenosine deaminase	NA
UHGV-0099700_56	eggNOG-mapper	398512.JQKC01000001_gene2076	Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)	NA
UHGV-0099700_56	Pfam	PF14437	MafB19-like deaminase	MafB19-deam
UHGV-0099700_56	NCBIFam	NF008113.2	tRNA adenosine(34) deaminase TadA	NA
UHGV-0099700_56	COG	COG0590	tRNA(Arg) A34 adenosine deaminase TadA	NA
UHGV-0099700_56	HAMAP	MF_00972	tRNA-specific adenosine deaminase [tadA]	NA
UHGV-0099700_56	Structural annotation	PF14437, MF_00972, NF008113, COG0590	NA	NA