UHGV-0099706

Genome information

Genome length 35,709 bps

CDS count 56

Completeness 99.98% (high-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099706
vOTU ID	vOTU-010375
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_214741
BioSample	SAMEA3541547
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.98% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.07
Jumbo phage	No

Genome content
Genome length	35,709 bps
GC content	57.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	94.43%
Average CDS length	606.11 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099706_1	eggNOG-mapper	411471.SUBVAR_05148	NA	NA
UHGV-0099706_2	KOfam	K14059	int; integrase	NA
UHGV-0099706_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0099706_2	UniRef90	UniRef90_A0A542ARL8	Phage integrase family protein	NA
UHGV-0099706_2	eggNOG-mapper	1235798.C817_02938	Phage integrase family	NA
UHGV-0099706_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0099706_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0099706_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0099706_3	eggNOG-mapper	1408311.JNJM01000013_gene2316	NA	NA
UHGV-0099706_4	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0099706_4	PHROG	phrog_6050	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0099706_4	UniRef90	UniRef90_A0A7M2RF22	HNH endonuclease	NA
UHGV-0099706_4	eggNOG-mapper	386415.NT01CX_1757	HNH endonuclease	NA
UHGV-0099706_4	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0099706_4	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0099706_4	Structural annotation	PF01844, NF040563, COG1403	NA	NA
UHGV-0099706_5	PHROG	phrog_87	metallo-protease	other
UHGV-0099706_5	UniRef90	UniRef90_A0A329UQ57	Peptidase_M78 domain-containing protein	NA
UHGV-0099706_5	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-0099706_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0099706_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0099706_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0099706_6	UniRef90	UniRef90_A0A372V3Y4	XRE family transcriptional regulator	NA
UHGV-0099706_6	eggNOG-mapper	411483.FAEPRAA2165_00756	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0099706_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0099706_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0099706_6	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0099706_7	UniRef90	UniRef90_A0A372V3V8	XRE family transcriptional regulator	NA
UHGV-0099706_7	Structural annotation	PF10078, NF040507, COG3655	NA	NA
UHGV-0099706_12	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0099706_12	UniRef90	UniRef90_UPI001898139F	YqaJ viral recombinase family protein	NA
UHGV-0099706_12	eggNOG-mapper	1121441.AUCX01000014_gene536	YqaJ-like viral recombinase domain	NA
UHGV-0099706_12	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0099706_12	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0099706_12	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0099706_12	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0099706_13	PHROG	phrog_674	NA	unknown function
UHGV-0099706_13	UniRef90	UniRef90_UPI001C02A855	NA	NA
UHGV-0099706_13	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-0099706_13	Pfam	PF07083	NA	DUF1351
UHGV-0099706_13	Structural annotation	PF07083	NA	NA
UHGV-0099706_14	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0099706_14	UniRef90	UniRef90_UPI00156DE752	phage recombination protein Bet	NA
UHGV-0099706_14	eggNOG-mapper	1031288.AXAA01000044_gene1973	Phage recombination protein Bet	NA
UHGV-0099706_14	Pfam	PF03837	RecT family	RecT
UHGV-0099706_14	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0099706_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0099706_14	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0099706_15	PHROG	phrog_15768	NA	unknown function
UHGV-0099706_15	UniRef90	UniRef90_UPI001959E913	NA	NA
UHGV-0099706_15	eggNOG-mapper	693979.Bache_0304	NA	NA
UHGV-0099706_15	Pfam	PF19808	NA	DUF6291
UHGV-0099706_15	Structural annotation	PF19808	NA	NA
UHGV-0099706_16	PHROG	phrog_9804	NA	unknown function
UHGV-0099706_16	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0099706_16	Structural annotation	PF11417	NA	NA
UHGV-0099706_17	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0099706_17	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0099706_17	UniRef90	UniRef90_UPI001CC0DA2C	DNA methylase N-4	NA
UHGV-0099706_17	eggNOG-mapper	936573.HMPREF1147_1705	DEAD-like helicases superfamily	NA
UHGV-0099706_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0099706_17	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0099706_17	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0099706_18	PHROG	phrog_24484	NA	unknown function
UHGV-0099706_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0099706_19	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0099706_19	UniRef90	UniRef90_A0A1M6MZ11	Holliday junction resolvase RusA (Prophage-encoded endonuclease)	NA
UHGV-0099706_19	eggNOG-mapper	1449126.JQKL01000003_gene1702	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0099706_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0099706_19	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0099706_22	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-0099706_22	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0099706_23	PHROG	phrog_1281	NA	unknown function
UHGV-0099706_23	UniRef90	UniRef90_UPI00130E304C	NA	NA
UHGV-0099706_23	eggNOG-mapper	999413.HMPREF1094_00200	NA	NA
UHGV-0099706_23	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0099706_23	COG	COG3600	NA	NA
UHGV-0099706_24	PHROG	phrog_5763	NA	unknown function
UHGV-0099706_24	eggNOG-mapper	999413.HMPREF1094_00199	NA	NA
UHGV-0099706_25	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0099706_25	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0099706_25	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0099706_26	Structural annotation	PF19962	NA	NA
UHGV-0099706_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0099706_27	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0099706_27	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0099706_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0099706_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0099706_27	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0099706_28	PHROG	phrog_104	portal protein	head and packaging
UHGV-0099706_28	UniRef90	UniRef90_A0A6N8H2B6	Phage portal protein	NA
UHGV-0099706_28	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0099706_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0099706_29	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0099706_29	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0099706_29	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0099706_29	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0099706_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0099706_31	UniRef90	UniRef90_A0A8J6IQD2	Phage scaffolding protein	NA
UHGV-0099706_31	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0099706_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0099706_32	PHROG	phrog_267	major head protein	head and packaging
UHGV-0099706_32	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0099706_32	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0099706_32	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0099706_33	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0099706_33	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0099706_33	Structural annotation	PF09355	NA	NA
UHGV-0099706_34	PHROG	phrog_501	head closure Hc1	connector
UHGV-0099706_34	UniRef90	UniRef90_D2BQF2	NA	NA
UHGV-0099706_34	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0099706_34	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0099706_35	PHROG	phrog_387	neck protein	connector
UHGV-0099706_35	eggNOG-mapper	768726.HMPREF9178_1059	NA	NA
UHGV-0099706_36	PHROG	phrog_123	tail terminator	connector
UHGV-0099706_36	eggNOG-mapper	1231377.C426_1732	NA	NA
UHGV-0099706_36	Structural annotation	PF06141	NA	NA
UHGV-0099706_37	PHROG	phrog_117	major tail protein	tail
UHGV-0099706_37	UniRef90	UniRef90_A0A6N8H024	Phage tail protein	NA
UHGV-0099706_37	eggNOG-mapper	875454.BAEW01000017_gene1590	domain, Protein	NA
UHGV-0099706_37	COG	COG5492	NA	NA
UHGV-0099706_37	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0099706_38	PHROG	phrog_1526	NA	unknown function
UHGV-0099706_38	UniRef90	UniRef90_A0A2X3SH55	NA	NA
UHGV-0099706_38	eggNOG-mapper	875454.BAEW01000017_gene1589	NA	NA
UHGV-0099706_39	PHROG	phrog_1633	NA	unknown function
UHGV-0099706_39	UniRef90	UniRef90_UPI0015CCAF51	NA	NA
UHGV-0099706_39	eggNOG-mapper	1121864.OMO_02160	NA	NA
UHGV-0099706_39	Pfam	PF17318	NA	DUF5361
UHGV-0099706_39	Structural annotation	PF17318	NA	NA
UHGV-0099706_40	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0099706_40	UniRef90	UniRef90_A0A6N8H0F9	Phage tail tape measure protein	NA
UHGV-0099706_40	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0099706_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0099706_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0099706_40	COG	COG5283	Phage-related tail protein	NA
UHGV-0099706_40	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0099706_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0099706_41	UniRef90	UniRef90_UPI0011065E28	phage tail family protein	NA
UHGV-0099706_41	eggNOG-mapper	411471.SUBVAR_06982	Phage tail protein	NA
UHGV-0099706_41	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0099706_42	PHROG	phrog_538	minor tail protein	tail
UHGV-0099706_42	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0099706_42	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0099706_42	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0099706_42	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0099706_43	PHROG	phrog_9534	head protein	head and packaging
UHGV-0099706_43	eggNOG-mapper	864178.E2ELJ8_9CAUD	cell adhesion	NA
UHGV-0099706_48	PHROG	phrog_15594	NA	unknown function
UHGV-0099706_48	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0099706_48	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0099706_49	PHROG	phrog_31538	NA	unknown function
UHGV-0099706_50	PHROG	phrog_13589	NA	unknown function
UHGV-0099706_50	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0099706_51	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0099706_52	eggNOG-mapper	1334046.AYTB01000013_gene457	ATPase involved in DNA repair	NA
UHGV-0099706_52	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0099706_54	PHROG	phrog_38190	NA	unknown function
UHGV-0099706_54	eggNOG-mapper	665956.HMPREF1032_02936	NA	NA
UHGV-0099706_55	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0099706_55	PHROG	phrog_6700	endolysin	lysis
UHGV-0099706_55	UniRef90	UniRef90_A0A6N8H6M3	M23 family metallopeptidase	NA
UHGV-0099706_55	eggNOG-mapper	314225.ELI_12330	COG0739 Membrane proteins related to metalloendopeptidases	NA
UHGV-0099706_55	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0099706_55	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0099706_56	PHROG	phrog_199	holin	lysis
UHGV-0099706_56	UniRef90	UniRef90_A0A6N8H4I3	Holin	NA
UHGV-0099706_56	eggNOG-mapper	411471.SUBVAR_05868	toxin secretion phage lysis holin	NA
UHGV-0099706_56	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0099706_56	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0099706_56	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0099706_56	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA