UHGV-0099728

Genome information

Genome length 22,484 bps

CDS count 30

Completeness 64.54% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0099728
vOTU ID	vOTU-036526
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_228759
BioSample	SAMEA3708558
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.68
Jumbo phage	No

Genome content
Genome length	22,484 bps
GC content	57.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	95.69%
Average CDS length	720.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0099728_1	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0099728_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0099728_2	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0099728_2	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0099728_2	UniRef90	UniRef90_A0A1E8F0N5	3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA	NA
UHGV-0099728_2	eggNOG-mapper	203275.BFO_0575	Bacterial group 2 Ig-like protein	NA
UHGV-0099728_2	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0099728_2	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0099728_2	COG	COG5492	NA	NA
UHGV-0099728_2	Structural annotation	PF02368, PF09423, MF_00575, NF003743, NF005261, COG5492	NA	NA
UHGV-0099728_3	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0099728_3	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0099728_4	Structural annotation	PF20622, NF032891	NA	NA
UHGV-0099728_5	PHROG	phrog_6616	tail protein	tail
UHGV-0099728_5	Structural annotation	PF13550, PF09931, NF033848, COG3500	NA	NA
UHGV-0099728_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0099728_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0099728_7	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0099728_7	eggNOG-mapper	1449050.JNLE01000003_gene3881	domain protein	NA
UHGV-0099728_7	COG	COG1511	NA	NA
UHGV-0099728_8	PHROG	phrog_706	NA	unknown function
UHGV-0099728_8	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0099728_8	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0099728_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0099728_8	Structural annotation	PF06854	NA	NA
UHGV-0099728_9	PHROG	phrog_11299	NA	unknown function
UHGV-0099728_9	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0099728_9	Structural annotation	PF10666	NA	NA
UHGV-0099728_10	PHROG	phrog_3099	NA	unknown function
UHGV-0099728_10	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0099728_10	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0099728_11	PHROG	phrog_3266	tail completion	connector
UHGV-0099728_11	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0099728_11	Structural annotation	PF12691	NA	NA
UHGV-0099728_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0099728_12	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0099728_12	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0099728_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0099728_12	Structural annotation	PF11114	NA	NA
UHGV-0099728_13	PHROG	phrog_3366	NA	unknown function
UHGV-0099728_13	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0099728_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0099728_14	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0099728_15	PHROG	phrog_267	major head protein	head and packaging
UHGV-0099728_15	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0099728_15	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0099728_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0099728_16	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0099728_16	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0099728_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0099728_16	Structural annotation	PF06810	NA	NA
UHGV-0099728_17	PHROG	phrog_15041	NA	unknown function
UHGV-0099728_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0099728_18	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0099728_18	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0099728_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0099728_18	COG	COG2369	NA	NA
UHGV-0099728_18	Structural annotation	PF06152	NA	NA
UHGV-0099728_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0099728_19	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0099728_19	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0099728_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0099728_20	PHROG	phrog_1233	NA	unknown function
UHGV-0099728_20	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0099728_20	Structural annotation	PF13058	NA	NA
UHGV-0099728_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0099728_21	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0099728_21	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0099728_21	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0099728_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0099728_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0099728_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0099728_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0099728_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0099728_21	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0099728_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0099728_23	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0099728_23	Pfam	PF07374	NA	DUF1492
UHGV-0099728_23	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0099728_24	PHROG	phrog_5781	NA	unknown function
UHGV-0099728_24	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-0099728_24	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0099728_24	Pfam	PF14359	NA	DUF4406
UHGV-0099728_24	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0099728_24	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0099728_25	PHROG	phrog_5984	NA	unknown function
UHGV-0099728_25	eggNOG-mapper	1203606.HMPREF1526_01893	NA	NA
UHGV-0099728_25	Structural annotation	PF19561	NA	NA
UHGV-0099728_27	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0099728_27	UniRef90	UniRef90_A0A1C6D177	Myb-like DNA-binding domain	NA
UHGV-0099728_27	eggNOG-mapper	445972.ANACOL_00160	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0099728_27	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0099728_27	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0099728_27	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0099728_27	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0099728_28	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-0099728_29	KOfam	K03700	recU; recombination protein U	NA
UHGV-0099728_29	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0099728_29	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-0099728_29	eggNOG-mapper	537013.CLOSTMETH_01720	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0099728_29	Pfam	PF03838	Recombination protein U	RecU
UHGV-0099728_29	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0099728_29	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0099728_30	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0099728_30	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0099728_30	Structural annotation	PF21578	NA	NA