UHGV-0100027

Genome information

Genome length 42,149 bps

CDS count 62

Completeness 99.90% (high-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100027
vOTU ID	vOTU-010390
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_219830
BioSample	SAMEA3541534
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.72
Jumbo phage	No

Genome content
Genome length	42,149 bps
GC content	42.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.55%
Average CDS length	618.97 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100027_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0100027_2	PHROG	phrog_670	endolysin	lysis
UHGV-0100027_2	UniRef90	UniRef90_UPI00192054C9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0100027_2	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0100027_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0100027_2	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0100027_2	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0100027_3	PHROG	phrog_443	holin	lysis
UHGV-0100027_3	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0100027_3	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0100027_3	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0100027_3	Structural annotation	PF16945	NA	NA
UHGV-0100027_4	PHROG	phrog_937	hemolysin	other
UHGV-0100027_5	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0100027_5	Structural annotation	NF040910	NA	NA
UHGV-0100027_6	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0100027_7	eggNOG-mapper	742733.HMPREF9469_01801	NA	NA
UHGV-0100027_8	PHROG	phrog_17196	kinase	other
UHGV-0100027_8	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0100027_8	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0100027_9	PHROG	phrog_18190	NA	unknown function
UHGV-0100027_9	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0100027_9	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0100027_9	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0100027_9	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0100027_10	PHROG	phrog_1194	NA	unknown function
UHGV-0100027_10	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0100027_10	Pfam	PF20458	NA	DUF6711
UHGV-0100027_10	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0100027_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0100027_11	UniRef90	UniRef90_A0A448W7L1	Phage-related protein	NA
UHGV-0100027_11	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0100027_11	COG	COG5283	Phage-related tail protein	NA
UHGV-0100027_12	PHROG	phrog_706	NA	unknown function
UHGV-0100027_12	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0100027_12	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0100027_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0100027_12	Structural annotation	PF06854	NA	NA
UHGV-0100027_13	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0100027_13	Structural annotation	PF10666	NA	NA
UHGV-0100027_14	PHROG	phrog_3099	NA	unknown function
UHGV-0100027_14	eggNOG-mapper	552396.HMPREF0863_00272	NA	NA
UHGV-0100027_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0100027_15	PHROG	phrog_3266	tail completion	connector
UHGV-0100027_15	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-0100027_15	Structural annotation	PF12691	NA	NA
UHGV-0100027_16	PHROG	phrog_3366	NA	unknown function
UHGV-0100027_16	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0100027_16	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0100027_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0100027_17	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0100027_18	PHROG	phrog_283	major head protein	head and packaging
UHGV-0100027_18	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0100027_18	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0100027_18	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0100027_18	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0100027_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0100027_19	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0100027_19	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0100027_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0100027_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0100027_21	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0100027_21	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0100027_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0100027_21	COG	COG2369	NA	NA
UHGV-0100027_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0100027_22	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0100027_22	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0100027_22	Structural annotation	PF11114	NA	NA
UHGV-0100027_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0100027_23	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0100027_23	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0100027_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0100027_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0100027_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0100027_24	UniRef90	UniRef90_A0A6L5YJQ3	PBSX family phage terminase large subunit	NA
UHGV-0100027_24	eggNOG-mapper	397290.C810_05187	Phage terminase large subunit	NA
UHGV-0100027_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0100027_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0100027_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0100027_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0100027_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0100027_25	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0100027_25	UniRef90	UniRef90_UPI00164AF8F0	terminase small subunit	NA
UHGV-0100027_25	eggNOG-mapper	1415774.U728_838	terminase, small subunit	NA
UHGV-0100027_25	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0100027_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0100027_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0100027_25	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0100027_26	eggNOG-mapper	411463.EUBVEN_01842	NA	NA
UHGV-0100027_27	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-0100027_31	PHROG	phrog_15198	NA	unknown function
UHGV-0100027_31	UniRef90	UniRef90_UPI00040CBFF3	NA	NA
UHGV-0100027_31	Pfam	PF04448	NA	DUF551
UHGV-0100027_31	Structural annotation	PF21627	NA	NA
UHGV-0100027_33	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0100027_33	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0100027_33	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0100027_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0100027_34	PHROG	phrog_29443	NA	unknown function
UHGV-0100027_34	UniRef90	UniRef90_A0A1M5D787	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0100027_34	eggNOG-mapper	1235798.C817_01880	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0100027_34	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0100027_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0100027_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0100027_34	Structural annotation	PF09445, MF_01589, NF005468, COG4106	NA	NA
UHGV-0100027_35	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0100027_35	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0100027_35	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0100027_35	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0100027_35	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0100027_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0100027_35	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0100027_35	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0100027_36	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0100027_36	UniRef90	UniRef90_A0A6L6XK67	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0100027_36	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-0100027_36	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0100027_36	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0100027_38	Structural annotation	PF11184	NA	NA
UHGV-0100027_40	PHROG	phrog_8684	NA	unknown function
UHGV-0100027_40	UniRef90	UniRef90_A0A1Q6ETU5	YopX domain-containing protein	NA
UHGV-0100027_40	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0100027_40	Pfam	PF09643	YopX protein	YopX
UHGV-0100027_40	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0100027_41	UniRef90	UniRef90_A0A173SA50	NA	NA
UHGV-0100027_41	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-0100027_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0100027_42	PHROG	phrog_26165	NA	unknown function
UHGV-0100027_44	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0100027_44	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0100027_44	UniRef90	UniRef90_UPI000E81B795	ATP-binding protein	NA
UHGV-0100027_44	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0100027_44	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0100027_44	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0100027_44	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0100027_45	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0100027_45	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0100027_45	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0100027_45	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0100027_46	PHROG	phrog_398	NA	unknown function
UHGV-0100027_46	UniRef90	UniRef90_UPI00068C968F	putative HNHc nuclease	NA
UHGV-0100027_46	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0100027_46	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0100027_46	Structural annotation	PF16784	NA	NA
UHGV-0100027_47	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0100027_47	UniRef90	UniRef90_A0A3R6H986	NA	NA
UHGV-0100027_47	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0100027_47	Pfam	PF06378	NA	DUF1071
UHGV-0100027_47	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0100027_49	Structural annotation	PF00412	NA	NA
UHGV-0100027_52	Structural annotation	PF12750	NA	NA
UHGV-0100027_53	UniRef90	UniRef90_UPI001C033D96	helix-turn-helix domain-containing protein	NA
UHGV-0100027_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0100027_53	Structural annotation	PF13443, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0100027_54	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0100027_55	UniRef90	UniRef90_A0A3B9CCY2	HTH cro/C1-type domain-containing protein	NA
UHGV-0100027_55	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0100027_55	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0100027_56	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0100027_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0100027_56	UniRef90	UniRef90_A0A828T008	HTH cro/C1-type domain-containing protein	NA
UHGV-0100027_56	eggNOG-mapper	396513.SCA_0466	sequence-specific DNA binding	NA
UHGV-0100027_56	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0100027_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100027_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0100027_56	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0100027_57	PHROG	phrog_87	metallo-protease	other
UHGV-0100027_57	UniRef90	UniRef90_UPI0005B2BE6E	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0100027_57	eggNOG-mapper	1347392.CCEZ01000005_gene1204	Zn peptidase	NA
UHGV-0100027_57	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0100027_57	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0100027_57	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0100027_58	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0100027_58	PHROG	phrog_19856	NA	unknown function
UHGV-0100027_58	eggNOG-mapper	411459.RUMOBE_01428	Restriction endonuclease	NA
UHGV-0100027_58	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0100027_58	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0100027_58	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0100027_59	Pfam	PF00227	Proteasome subunit	Proteasome
UHGV-0100027_59	Structural annotation	PF00227, MF_02113_A, TIGR03634, COG0638	NA	NA
UHGV-0100027_61	KOfam	K14059	int; integrase	NA
UHGV-0100027_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0100027_61	UniRef90	UniRef90_R6ZYN0	Site-specific recombinase phage integrase family	NA
UHGV-0100027_61	eggNOG-mapper	1235793.C809_01886	Phage integrase family	NA
UHGV-0100027_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0100027_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0100027_61	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0100027_62	KOfam	K03664	smpB; SsrA-binding protein	NA
UHGV-0100027_62	PHROG	phrog_6791	NA	unknown function
UHGV-0100027_62	UniRef90	UniRef90_A0A0M6WYX5	SsrA-binding protein	NA
UHGV-0100027_62	eggNOG-mapper	140626.JHWB01000016_gene2301	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA	NA
UHGV-0100027_62	Pfam	PF01668	SmpB protein	SmpB
UHGV-0100027_62	NCBIFam	NF003843.0	SsrA-binding protein SmpB	NA
UHGV-0100027_62	COG	COG0691	tmRNA-binding protein	NA
UHGV-0100027_62	HAMAP	MF_00023	SsrA-binding protein [smpB]	NA
UHGV-0100027_62	Structural annotation	PF01668, MF_00023, NF003843, COG0691	NA	NA