UHGV-0100104

Genome information

Genome length 32,032 bps

CDS count 54

Completeness 88.34% (medium-quality)

geNomad score 0.9657

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100104
vOTU ID	vOTU-021678
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_207271
BioSample	SAMEA3449372
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9657
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.14
Jumbo phage	No

Genome content
Genome length	32,032 bps
GC content	28.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.02%
Average CDS length	542.17 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100104_4	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0100104_4	UniRef90	UniRef90_UPI001AD59D34	Phage tail tape measure protein	NA
UHGV-0100104_4	eggNOG-mapper	195103.CPF_1576	tail tape measure protein	NA
UHGV-0100104_4	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0100104_5	PHROG	phrog_35723	NA	unknown function
UHGV-0100104_5	eggNOG-mapper	226185.EF_2096	sodium-dependent phosphate transmembrane transporter activity	NA
UHGV-0100104_5	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0100104_5	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0100104_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0100104_6	PHROG	phrog_5319	outer membrane protein	other
UHGV-0100104_6	UniRef90	UniRef90_A0A1Q6JN93	zinc_ribbon_2 domain-containing protein	NA
UHGV-0100104_6	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-0100104_6	COG	COG3103	NA	NA
UHGV-0100104_7	PHROG	phrog_706	NA	unknown function
UHGV-0100104_7	UniRef90	UniRef90_R5ZNB7	Putative phage gp15 protein	NA
UHGV-0100104_7	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-0100104_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0100104_7	Structural annotation	PF06854	NA	NA
UHGV-0100104_9	PHROG	phrog_3099	NA	unknown function
UHGV-0100104_9	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0100104_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0100104_10	PHROG	phrog_3266	tail completion	connector
UHGV-0100104_10	eggNOG-mapper	1160721.RBI_II00533	NA	NA
UHGV-0100104_10	Structural annotation	PF12691	NA	NA
UHGV-0100104_11	UniRef90	UniRef90_R5YSS3	Minor capsid	NA
UHGV-0100104_11	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0100104_11	Structural annotation	PF11114	NA	NA
UHGV-0100104_12	Pfam	PF20536	NA	DUF6751
UHGV-0100104_12	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0100104_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0100104_14	PHROG	phrog_1539	Arc-like repressor	transcription regulation
UHGV-0100104_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0100104_15	UniRef90	UniRef90_A0A345MKD0	Main capsid protein	NA
UHGV-0100104_15	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0100104_15	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0100104_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0100104_16	UniRef90	UniRef90_R6XV28	Phage minor structural protein GP20	NA
UHGV-0100104_16	eggNOG-mapper	862517.HMPREF9225_1649	COG NOG36366 non supervised orthologous group	NA
UHGV-0100104_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0100104_16	Structural annotation	PF06810	NA	NA
UHGV-0100104_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0100104_18	UniRef90	UniRef90_R5YW81	Minor capsid 2 protein	NA
UHGV-0100104_18	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0100104_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0100104_18	COG	COG2369	NA	NA
UHGV-0100104_18	Structural annotation	PF06152, PF12106	NA	NA
UHGV-0100104_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0100104_19	UniRef90	UniRef90_A0A858BRS2	Phage portal protein	NA
UHGV-0100104_19	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0100104_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0100104_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0100104_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0100104_20	UniRef90	UniRef90_R5ILS3	Phage terminase large subunit PBSX family	NA
UHGV-0100104_20	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-0100104_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0100104_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0100104_20	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0100104_24	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0100104_33	PHROG	phrog_2776	NA	unknown function
UHGV-0100104_33	eggNOG-mapper	1423775.BAMN01000002_gene1875	NA	NA
UHGV-0100104_33	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0100104_36	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0100104_37	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0100104_37	UniRef90	UniRef90_A0A414ZQZ4	NAD(P)-dependent oxidoreductase	NA
UHGV-0100104_37	eggNOG-mapper	1123263.AUKY01000096_gene1823	DNA restriction-modification system	NA
UHGV-0100104_37	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0100104_37	Structural annotation	PF03848, MF_00341, NF012219, COG1255	NA	NA
UHGV-0100104_38	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0100104_38	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0100104_38	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-0100104_38	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0100104_38	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0100104_38	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0100104_39	PHROG	phrog_1123	NA	unknown function
UHGV-0100104_39	eggNOG-mapper	411483.FAEPRAA2165_01885	NA	NA
UHGV-0100104_39	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0100104_39	Structural annotation	PF02002, TIGR03433, COG1695	NA	NA
UHGV-0100104_40	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0100104_40	UniRef90	UniRef90_UPI001CCB5F90	conserved phage C-terminal domain-containing protein	NA
UHGV-0100104_40	eggNOG-mapper	1168613.I1W658_9CAUD	calcium ion binding	NA
UHGV-0100104_40	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0100104_41	PHROG	phrog_7566	NA	unknown function
UHGV-0100104_42	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0100104_42	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0100104_42	Structural annotation	PF05772	NA	NA
UHGV-0100104_43	PHROG	phrog_10048	NA	unknown function
UHGV-0100104_43	UniRef90	UniRef90_A0A379C7X1	Exodeoxyribonuclease X	NA
UHGV-0100104_43	eggNOG-mapper	536232.CLM_2567	NA	NA
UHGV-0100104_43	Pfam	PF20600	Exodeoxyribonuclease X-like C-terminal	ExoX-like_C
UHGV-0100104_44	PHROG	phrog_674	NA	unknown function
UHGV-0100104_44	UniRef90	UniRef90_A0A7X9AE52	NA	NA
UHGV-0100104_44	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0100104_44	Pfam	PF07083	NA	DUF1351
UHGV-0100104_44	Structural annotation	PF07083	NA	NA
UHGV-0100104_47	Structural annotation	PF20385	NA	NA
UHGV-0100104_50	Structural annotation	PF09035, NF040990, COG3311	NA	NA
UHGV-0100104_51	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0100104_51	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0100104_51	UniRef90	UniRef90_A0A1Q6K3M2	HTH cro/C1-type domain-containing protein	NA
UHGV-0100104_51	eggNOG-mapper	494416.AYXN01000040_gene2433	PFAM helix-turn-helix domain protein	NA
UHGV-0100104_51	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0100104_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100104_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0100104_51	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0100104_52	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0100104_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0100104_52	UniRef90	UniRef90_A0A3D1PLJ6	HTH cro/C1-type domain-containing protein	NA
UHGV-0100104_52	eggNOG-mapper	755731.Clo1100_0530	transcriptional regulator	NA
UHGV-0100104_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100104_52	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0100104_52	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0100104_53	Structural annotation	PF06114	NA	NA
UHGV-0100104_54	KOfam	K14059	int; integrase	NA
UHGV-0100104_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0100104_54	UniRef90	UniRef90_A0A847CK41	Site-specific integrase	NA
UHGV-0100104_54	eggNOG-mapper	428126.CLOSPI_00819	Phage integrase family	NA
UHGV-0100104_54	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0100104_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0100104_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0100104_54	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA