UHGV-0100174

Genome information

Genome length 33,787 bps

CDS count 50

Completeness 89.95% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100174
vOTU ID	vOTU-035512
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_221497
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	83.35
Jumbo phage	No

Genome content
Genome length	33,787 bps
GC content	37.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	88.98%
Average CDS length	602.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100174_1	PHROG	phrog_4707	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0100174_1	eggNOG-mapper	1423724.BAMM01000012_gene1382	NA	NA
UHGV-0100174_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0100174_2	UniRef90	UniRef90_A0A1V9SAY1	DNA-binding protein	NA
UHGV-0100174_2	eggNOG-mapper	575594.ACOH01000010_gene1680	Helix-turn-helix domain	NA
UHGV-0100174_2	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0100174_3	KOfam	K07496	K07496; putative transposase	NA
UHGV-0100174_3	PHROG	phrog_506	transposase	integration and excision
UHGV-0100174_3	UniRef90	UniRef90_A0A1V9TSP4	Transposase	NA
UHGV-0100174_3	eggNOG-mapper	1423816.BACQ01000004_gene89	transposase, IS605 OrfB family	NA
UHGV-0100174_3	PADLOC	Cas14c	CAS-V-F; effector__SPE	CRISPR-CAS
UHGV-0100174_3	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-0100174_3	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0100174_3	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0100174_3	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0100174_3	COG	COG0675	Transposase	NA
UHGV-0100174_3	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA
UHGV-0100174_4	KOfam	K07491	rayT; REP-associated tyrosine transposase	NA
UHGV-0100174_4	PHROG	phrog_2577	transposase	integration and excision
UHGV-0100174_4	UniRef90	UniRef90_A0A385XMN0	Y1_Tnp domain-containing protein	NA
UHGV-0100174_4	eggNOG-mapper	557436.Lreu_1682	Transposase IS200 like	NA
UHGV-0100174_4	Pfam	PF01797	Transposase IS200 like	Y1_Tnp
UHGV-0100174_4	NCBIFam	NF033573.1	IS200/IS605 family transposase	NA
UHGV-0100174_4	COG	COG1943	REP element-mobilizing transposase RayT	NA
UHGV-0100174_4	Structural annotation	PF01797, MF_01450, NF033573, COG1943	NA	NA
UHGV-0100174_5	PHROG	phrog_398	NA	unknown function
UHGV-0100174_5	UniRef90	UniRef90_V6DM30	NA	NA
UHGV-0100174_5	eggNOG-mapper	1423814.HMPREF0549_1764	Putative HNHc nuclease	NA
UHGV-0100174_5	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0100174_5	Structural annotation	PF16784	NA	NA
UHGV-0100174_6	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0100174_6	UniRef90	UniRef90_UPI00177DA43F	ERF family protein	NA
UHGV-0100174_6	eggNOG-mapper	575594.ACOH01000003_gene815	ERF superfamily	NA
UHGV-0100174_6	Pfam	PF04404	ERF superfamily	ERF
UHGV-0100174_6	Structural annotation	PF04404, TIGR00607	NA	NA
UHGV-0100174_7	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0100174_7	UniRef90	UniRef90_UPI001F1C898B	host-nuclease inhibitor Gam family protein	NA
UHGV-0100174_7	eggNOG-mapper	926561.KB900619_gene2386	Bacteriophage Mu Gam like protein	NA
UHGV-0100174_7	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0100174_9	UniRef90	UniRef90_A0A4S2EQK1	XRE family transcriptional regulator	NA
UHGV-0100174_9	eggNOG-mapper	638301.HMPREF0444_1537	Helix-turn-helix	NA
UHGV-0100174_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100174_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0100174_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0100174_11	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0100174_11	UniRef90	UniRef90_UPI0013683CFA	Rha family transcriptional regulator	NA
UHGV-0100174_11	eggNOG-mapper	97137.C821_00091	ORF6C domain	NA
UHGV-0100174_11	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0100174_11	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0100174_11	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0100174_11	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0100174_11	Structural annotation	PF10552, PF10543, TIGR02681, COG3646	NA	NA
UHGV-0100174_12	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0100174_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0100174_12	UniRef90	UniRef90_UPI00136F50A6	helix-turn-helix transcriptional regulator	NA
UHGV-0100174_12	eggNOG-mapper	511437.Lbuc_1451	Helix-turn-helix XRE-family like proteins	NA
UHGV-0100174_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100174_12	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0100174_13	KOfam	K07273	acm; lysozyme	NA
UHGV-0100174_13	PHROG	phrog_291	endolysin	lysis
UHGV-0100174_13	UniRef90	UniRef90_F7QV41	Lysin	NA
UHGV-0100174_13	eggNOG-mapper	1567453.A0A0A1ERA5_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0100174_13	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0100174_13	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0100174_13	Structural annotation	PF01183, PF08460, MF_00496, NF033202, NF009621, COG3757	NA	NA
UHGV-0100174_14	PHROG	phrog_2609	holin	lysis
UHGV-0100174_14	UniRef90	UniRef90_UPI000BAFFA1D	phage holin, LLH family	NA
UHGV-0100174_14	eggNOG-mapper	1423724.BAMM01000023_gene1895	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0100174_14	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0100174_14	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0100174_15	PHROG	phrog_1009	NA	unknown function
UHGV-0100174_15	UniRef90	UniRef90_A0A6F9XIP2	NA	NA
UHGV-0100174_16	PHROG	phrog_134	NA	unknown function
UHGV-0100174_16	UniRef90	UniRef90_A0A1V9U861	XkdX family protein	NA
UHGV-0100174_16	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0100174_16	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0100174_17	PHROG	phrog_1766	tail fiber protein	tail
UHGV-0100174_17	eggNOG-mapper	913848.AELK01000127_gene1734	NA	NA
UHGV-0100174_19	PHROG	phrog_10512	virion structural protein	head and packaging
UHGV-0100174_19	UniRef90	UniRef90_UPI00136C98EA	BppU family phage baseplate upper protein	NA
UHGV-0100174_19	eggNOG-mapper	944562.HMPREF9102_0426	Calcineurin-like phosphoesterase	NA
UHGV-0100174_19	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0100174_19	Structural annotation	PF18667, PF10651	NA	NA
UHGV-0100174_21	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0100174_21	PHROG	phrog_3558	tail protein	tail
UHGV-0100174_21	UniRef90	UniRef90_A0A1H0CAD6	Peptidase family M23	NA
UHGV-0100174_21	eggNOG-mapper	349123.Lreu23DRAFT_4198	Prophage endopeptidase tail	NA
UHGV-0100174_21	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0100174_21	COG	COG4926	Phage-related protein	NA
UHGV-0100174_21	Structural annotation	PF14594, PF01551, PF06605, TIGR01665, COG4379, COG0739	NA	NA
UHGV-0100174_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0100174_22	UniRef90	UniRef90_UPI00136CA7F3	phage tail protein	NA
UHGV-0100174_22	eggNOG-mapper	349123.Lreu23DRAFT_4199	phage tail	NA
UHGV-0100174_22	COG	COG4722	Phage-related protein YomH	NA
UHGV-0100174_22	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0100174_23	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0100174_23	UniRef90	UniRef90_UPI001368B447	tape measure protein	NA
UHGV-0100174_23	eggNOG-mapper	349123.Lreu23DRAFT_4200	Phage tail tape measure protein	NA
UHGV-0100174_23	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0100174_23	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0100174_23	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0100174_23	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0100174_24	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0100174_24	UniRef90	UniRef90_M5J7Z6	NA	NA
UHGV-0100174_24	eggNOG-mapper	543734.LCABL_13390	NA	NA
UHGV-0100174_25	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0100174_25	UniRef90	UniRef90_UPI000BAF1FAA	tail assembly chaperone	NA
UHGV-0100174_25	eggNOG-mapper	1423724.BAMM01000023_gene1904	Phage tail assembly chaperone protein, TAC	NA
UHGV-0100174_25	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0100174_25	Structural annotation	PF12363	NA	NA
UHGV-0100174_26	PHROG	phrog_238	major tail protein	tail
UHGV-0100174_26	UniRef90	UniRef90_A0A2G4RKC0	Phage major tail protein, TP901-1 family	NA
UHGV-0100174_26	eggNOG-mapper	1567453.A0A0A1ELH3_9CAUD	Phage major tail protein 2	NA
UHGV-0100174_26	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0100174_26	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0100174_26	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0100174_27	PHROG	phrog_176	tail terminator	connector
UHGV-0100174_27	UniRef90	UniRef90_UPI0002DDF3F1	NA	NA
UHGV-0100174_27	eggNOG-mapper	568703.LGG_01133	NA	NA
UHGV-0100174_27	Structural annotation	PF11367	NA	NA
UHGV-0100174_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0100174_28	UniRef90	UniRef90_E7FP97	Phage protein, HK97 gp10 family	NA
UHGV-0100174_28	eggNOG-mapper	1567453.A0A0A1ENQ3_9CAUD	exonuclease activity	NA
UHGV-0100174_28	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0100174_28	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0100174_29	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0100174_29	eggNOG-mapper	908339.HMPREF9265_0941	NA	NA
UHGV-0100174_29	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0100174_30	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0100174_30	UniRef90	UniRef90_A0A0D4CJB4	NA	NA
UHGV-0100174_30	eggNOG-mapper	908339.HMPREF9265_0942	Phage gp6-like head-tail connector protein	NA
UHGV-0100174_30	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0100174_30	Structural annotation	PF05135	NA	NA
UHGV-0100174_31	PHROG	phrog_544	major head protein	head and packaging
UHGV-0100174_31	UniRef90	UniRef90_UPI001E298818	phage capsid protein	NA
UHGV-0100174_31	eggNOG-mapper	650150.ERH_0613	NA	NA
UHGV-0100174_31	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0100174_32	PHROG	phrog_2932	head scaffolding protein	head and packaging
UHGV-0100174_32	UniRef90	UniRef90_UPI00136BD8BA	NA	NA
UHGV-0100174_32	eggNOG-mapper	1567453.A0A0A1EN85_9CAUD	aminoacyl-tRNA ligase activity	NA
UHGV-0100174_32	Pfam	PF14265	NA	DUF4355
UHGV-0100174_33	PHROG	phrog_4345	NA	unknown function
UHGV-0100174_34	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0100174_34	UniRef90	UniRef90_UPI001371480D	phage head morphogenesis protein	NA
UHGV-0100174_34	eggNOG-mapper	908339.HMPREF9265_1612	Phage Mu protein F like protein	NA
UHGV-0100174_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0100174_34	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0100174_34	COG	COG2369	NA	NA
UHGV-0100174_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0100174_35	UniRef90	UniRef90_UPI0013C335D1	phage portal protein	NA
UHGV-0100174_35	eggNOG-mapper	908339.HMPREF9265_1613	Phage portal protein	NA
UHGV-0100174_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0100174_35	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0100174_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0100174_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0100174_36	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0100174_36	UniRef90	UniRef90_A0A0D4CJ43	Terminase	NA
UHGV-0100174_36	eggNOG-mapper	713605.ADHG01000003_gene726	Terminase-like family	NA
UHGV-0100174_36	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0100174_36	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0100174_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0100174_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0100174_36	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0100174_37	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0100174_37	UniRef90	UniRef90_UPI001E34C818	small terminase subunit	NA
UHGV-0100174_37	eggNOG-mapper	139871.A9D9R6_9VIRU	endonuclease activity	NA
UHGV-0100174_37	Structural annotation	PF07141	NA	NA
UHGV-0100174_38	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0100174_38	UniRef90	UniRef90_UPI0013694F15	transcriptional regulator	NA
UHGV-0100174_38	eggNOG-mapper	1423755.BAML01000004_gene394	Phage transcriptional regulator, ArpU family	NA
UHGV-0100174_38	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0100174_38	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-0100174_41	UniRef90	UniRef90_UPI00136AE63F	helix-turn-helix domain-containing protein	NA
UHGV-0100174_41	Structural annotation	PF01381, NF040507, COG2944	NA	NA
UHGV-0100174_44	PHROG	phrog_5610	NA	unknown function
UHGV-0100174_44	UniRef90	UniRef90_A0A7H9CRC0	NA	NA
UHGV-0100174_44	eggNOG-mapper	349123.Lreu23DRAFT_4242	NA	NA
UHGV-0100174_44	Pfam	PF16729	NA	DUF5067
UHGV-0100174_44	Structural annotation	PF16729, TIGR03780, COG2967	NA	NA
UHGV-0100174_46	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0100174_46	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0100174_46	UniRef90	UniRef90_UPI00136CB021	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0100174_46	eggNOG-mapper	349123.Lreu23DRAFT_3099	Endodeoxyribonuclease RusA	NA
UHGV-0100174_46	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0100174_46	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0100174_46	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0100174_48	eggNOG-mapper	1423724.BAMM01000020_gene1810	NA	NA
UHGV-0100174_49	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0100174_49	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0100174_49	UniRef90	UniRef90_A0A1V9TNF7	SF4 helicase domain-containing protein	NA
UHGV-0100174_49	eggNOG-mapper	1423724.BAMM01000020_gene1809	DnaB-like helicase C terminal domain	NA
UHGV-0100174_49	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0100174_49	COG	COG0305	Replicative DNA helicase	NA
UHGV-0100174_49	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0100174_50	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0100174_50	UniRef90	UniRef90_UPI001D0D0081	conserved phage C-terminal domain-containing protein	NA
UHGV-0100174_50	eggNOG-mapper	278197.PEPE_0759	Transcriptional regulator	NA
UHGV-0100174_50	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0100174_50	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0100174_50	COG	COG1802	DNA-binding transcriptional regulator, GntR family	NA