UHGV-0100176

Genome information

Genome length 23,950 bps

CDS count 35

Completeness 68.10% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100176
vOTU ID	vOTU-042307
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_203774
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.15
Jumbo phage	No

Genome content
Genome length	23,950 bps
GC content	57.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	90.63%
Average CDS length	621.69 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100176_1	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0100176_1	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0100176_1	UniRef90	UniRef90_UPI001966D711	AAA family ATPase	NA
UHGV-0100176_1	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0100176_1	Pfam	PF13481	AAA domain	AAA_25
UHGV-0100176_1	COG	COG3598	RecA-family ATPase	NA
UHGV-0100176_2	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0100176_2	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0100176_2	UniRef90	UniRef90_UPI00122CFAB3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0100176_2	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-0100176_2	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0100176_2	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0100176_2	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0100176_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0100176_3	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0100176_3	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0100176_3	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0100176_4	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0100176_4	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0100176_4	UniRef90	UniRef90_A0A3A6JQY9	Terminase small subunit	NA
UHGV-0100176_4	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-0100176_4	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0100176_4	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0100176_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0100176_5	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0100176_5	UniRef90	UniRef90_E2ZNR1	Phage terminase, large subunit, PBSX family	NA
UHGV-0100176_5	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0100176_5	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0100176_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0100176_5	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0100176_6	PHROG	phrog_533	portal protein	head and packaging
UHGV-0100176_6	UniRef90	UniRef90_E2ZNR0	Putative phage minor capsid protein	NA
UHGV-0100176_6	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-0100176_6	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0100176_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0100176_7	UniRef90	UniRef90_UPI001966DE3B	phage minor capsid protein	NA
UHGV-0100176_7	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-0100176_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0100176_7	COG	COG2369	NA	NA
UHGV-0100176_7	Structural annotation	PF06152	NA	NA
UHGV-0100176_8	PHROG	phrog_3896	NA	unknown function
UHGV-0100176_8	eggNOG-mapper	476272.RUMHYD_01985	NA	NA
UHGV-0100176_9	Structural annotation	PF09454, MF_00644	NA	NA
UHGV-0100176_11	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0100176_11	UniRef90	UniRef90_UPI001D0ED280	AP2 domain-containing protein	NA
UHGV-0100176_11	eggNOG-mapper	198110.B3FK10_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0100176_11	Structural annotation	PF17375	NA	NA
UHGV-0100176_12	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0100176_12	UniRef90	UniRef90_UPI001CBDED93	phage minor capsid protein	NA
UHGV-0100176_12	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-0100176_12	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0100176_12	COG	COG2369	NA	NA
UHGV-0100176_14	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0100176_14	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-0100176_14	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0100176_16	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0100176_16	UniRef90	UniRef90_A0A7W0C2S3	Putative transcriptional regulator	NA
UHGV-0100176_16	eggNOG-mapper	1460635.JCM19038_3433	NA	NA
UHGV-0100176_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0100176_17	UniRef90	UniRef90_E6U604	Minor structural GP20 protein	NA
UHGV-0100176_17	eggNOG-mapper	663278.Ethha_0093	NA	NA
UHGV-0100176_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0100176_17	Structural annotation	PF06810	NA	NA
UHGV-0100176_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0100176_18	UniRef90	UniRef90_A0A2A7AII3	Phage major capsid protein	NA
UHGV-0100176_18	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-0100176_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0100176_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0100176_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0100176_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0100176_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0100176_20	PHROG	phrog_3366	NA	unknown function
UHGV-0100176_20	Structural annotation	PF20536	NA	NA
UHGV-0100176_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0100176_21	UniRef90	UniRef90_A0A2A6Z736	Capsid protein	NA
UHGV-0100176_21	eggNOG-mapper	748224.HMPREF9436_03332	Minor capsid protein	NA
UHGV-0100176_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0100176_21	Structural annotation	PF11114	NA	NA
UHGV-0100176_22	PHROG	phrog_3266	tail completion	connector
UHGV-0100176_22	UniRef90	UniRef90_UPI000D830B30	chloramphenicol resistance protein	NA
UHGV-0100176_22	eggNOG-mapper	748224.HMPREF9436_03331	NA	NA
UHGV-0100176_22	Structural annotation	PF12691	NA	NA
UHGV-0100176_23	PHROG	phrog_820	major tail protein	tail
UHGV-0100176_23	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-0100176_23	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0100176_24	PHROG	phrog_4450	NA	unknown function
UHGV-0100176_24	Structural annotation	PF20378	NA	NA
UHGV-0100176_25	PHROG	phrog_706	NA	unknown function
UHGV-0100176_25	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-0100176_25	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-0100176_25	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0100176_25	Structural annotation	PF06854	NA	NA
UHGV-0100176_26	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0100176_26	UniRef90	UniRef90_A0A844EE31	TMP_3 domain-containing protein	NA
UHGV-0100176_26	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0100176_26	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0100176_26	COG	COG5283	Phage-related tail protein	NA
UHGV-0100176_26	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0100176_27	PHROG	phrog_36410	NA	unknown function
UHGV-0100176_27	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-0100176_27	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-0100176_27	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0100176_28	PHROG	phrog_538	minor tail protein	tail
UHGV-0100176_28	UniRef90	UniRef90_A0A4U7JBL2	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0100176_28	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0100176_28	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0100176_28	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0100176_29	PHROG	phrog_9534	head protein	head and packaging
UHGV-0100176_29	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0100176_29	Structural annotation	PF20747	NA	NA
UHGV-0100176_31	PHROG	phrog_1382	NA	unknown function
UHGV-0100176_31	UniRef90	UniRef90_A0A844DM60	ASCH domain-containing protein	NA
UHGV-0100176_31	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0100176_31	Structural annotation	NF040910	NA	NA
UHGV-0100176_32	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0100176_32	PHROG	phrog_894	endolysin	lysis
UHGV-0100176_32	UniRef90	UniRef90_E2ZFH4	Peptidase M15	NA
UHGV-0100176_32	eggNOG-mapper	748224.HMPREF9436_00407	Peptidase M15A	NA
UHGV-0100176_32	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0100176_32	COG	COG3108	NA	NA
UHGV-0100176_32	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0100176_33	PHROG	phrog_1863	NA	unknown function
UHGV-0100176_33	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0100176_34	PHROG	phrog_263	holin	lysis
UHGV-0100176_34	UniRef90	UniRef90_A0A2A6ZBA4	Phage holin	NA
UHGV-0100176_34	eggNOG-mapper	748224.HMPREF9436_00409	SPP1 phage holin	NA
UHGV-0100176_34	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0100176_34	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0100176_34	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0100176_35	KOfam	K03596	lepA; GTP-binding protein LepA	NA
UHGV-0100176_35	PHROG	phrog_6880	translation elongation factor	other
UHGV-0100176_35	UniRef90	UniRef90_J9GSP9	GTP-binding protein LepA	NA
UHGV-0100176_35	eggNOG-mapper	657322.FPR_13830	Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner	NA
UHGV-0100176_35	Pfam	PF00679	Elongation factor G C-terminus	EFG_C
UHGV-0100176_35	Pfam	PF06421	GTP-binding protein LepA C-terminus	LepA_C
UHGV-0100176_35	COG	COG0481	Translation elongation factor EF-4, membrane-bound GTPase	NA