UHGV-0100227

Genome information

Genome length 39,423 bps

CDS count 64

Completeness 99.90% (high-quality)

geNomad score 0.9446

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100227
vOTU ID	vOTU-060812
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_218906
BioSample	SAMEA3541544
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9446
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.87
Jumbo phage	No

Genome content
Genome length	39,423 bps
GC content	28.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	90.46%
Average CDS length	559.55 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100227_1	eggNOG-mapper	411470.RUMGNA_02701	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0100227_1	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0100227_2	PHROG	phrog_4809	NA	unknown function
UHGV-0100227_2	UniRef90	UniRef90_A0A367FXD1	ClbS/DfsB family four-helix bundle protein	NA
UHGV-0100227_2	eggNOG-mapper	1121115.AXVN01000039_gene3286	NA	NA
UHGV-0100227_2	Pfam	PF08020	NA	DUF1706
UHGV-0100227_2	COG	COG4283	NA	NA
UHGV-0100227_3	UniRef90	UniRef90_A0A412KGZ2	NA	NA
UHGV-0100227_3	eggNOG-mapper	1121115.AXVN01000039_gene3285	NA	NA
UHGV-0100227_3	Pfam	PF12663	NA	DUF3788
UHGV-0100227_3	COG	COG3708	Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain	NA
UHGV-0100227_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0100227_4	PHROG	phrog_95	integrase	integration and excision
UHGV-0100227_4	UniRef90	UniRef90_C3WEQ4	Resolvase, N-terminal domain protein	NA
UHGV-0100227_4	eggNOG-mapper	469616.FMAG_01922	Recombinase	NA
UHGV-0100227_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0100227_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-0100227_4	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0100227_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0100227_4	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0100227_10	PHROG	phrog_173	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UHGV-0100227_10	UniRef90	UniRef90_UPI00158D98B2	dUTP diphosphatase	NA
UHGV-0100227_10	Pfam	PF08761	dUTPase	dUTPase_2
UHGV-0100227_13	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0100227_13	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0100227_13	UniRef90	UniRef90_C3WER4	Recombinase, phage RecT family	NA
UHGV-0100227_13	eggNOG-mapper	469616.FMAG_01932	RecT family	NA
UHGV-0100227_13	Pfam	PF03837	RecT family	RecT
UHGV-0100227_13	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0100227_13	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0100227_13	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0100227_16	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0100227_16	UniRef90	UniRef90_C3WER7	YqaJ viral recombinase family protein	NA
UHGV-0100227_16	eggNOG-mapper	469616.FMAG_01935	YqaJ-like viral recombinase domain	NA
UHGV-0100227_16	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0100227_16	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0100227_16	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0100227_20	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0100227_20	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0100227_20	UniRef90	UniRef90_C3WER9	DNA-binding helix-turn-helix protein	NA
UHGV-0100227_20	eggNOG-mapper	469616.FMAG_01937	Helix-turn-helix domain	NA
UHGV-0100227_20	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0100227_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100227_20	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0100227_20	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0100227_21	PHROG	phrog_87	metallo-protease	other
UHGV-0100227_21	UniRef90	UniRef90_C3WES0	Putative toxin-antitoxin system, toxin component	NA
UHGV-0100227_21	eggNOG-mapper	469616.FMAG_01938	IrrE N-terminal-like domain	NA
UHGV-0100227_21	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0100227_21	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0100227_21	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0100227_27	PHROG	phrog_6969	NA	unknown function
UHGV-0100227_27	UniRef90	UniRef90_UPI001F1FF62D	helix-turn-helix domain-containing protein	NA
UHGV-0100227_27	eggNOG-mapper	469616.FMAG_01775	NA	NA
UHGV-0100227_27	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0100227_28	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0100227_28	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0100227_28	eggNOG-mapper	742740.HMPREF9474_02290	NA	NA
UHGV-0100227_28	Structural annotation	PF12643, MF_00374, TIGR03188, COG0140	NA	NA
UHGV-0100227_31	PHROG	phrog_824	NA	unknown function
UHGV-0100227_31	UniRef90	UniRef90_C3WET3	VRR-NUC domain protein	NA
UHGV-0100227_31	eggNOG-mapper	469616.FMAG_01951	VRR_NUC	NA
UHGV-0100227_31	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-0100227_32	KOfam	K24072	xpf; positive control factor	NA
UHGV-0100227_32	UniRef90	UniRef90_C3WET4	Sigma70_r4 domain-containing protein	NA
UHGV-0100227_32	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0100227_35	KOfam	K03071	secB; preprotein translocase subunit SecB	NA
UHGV-0100227_35	PHROG	phrog_21664	NA	unknown function
UHGV-0100227_35	UniRef90	UniRef90_A0A8G0KC84	Protein-export chaperone SecB	NA
UHGV-0100227_35	eggNOG-mapper	457405.FSDG_01360	protein tetramerization	NA
UHGV-0100227_35	Pfam	PF02556	Preprotein translocase subunit SecB	SecB
UHGV-0100227_35	COG	COG1952	Preprotein translocase subunit SecB	NA
UHGV-0100227_35	Structural annotation	PF02556, MF_00821, NF004391, COG1952	NA	NA
UHGV-0100227_37	PHROG	phrog_14664	NA	unknown function
UHGV-0100227_37	eggNOG-mapper	457405.FSDG_02187	NA	NA
UHGV-0100227_38	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0100227_38	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0100227_38	UniRef90	UniRef90_A0A354MD90	Transcriptional regulator	NA
UHGV-0100227_38	eggNOG-mapper	1262449.CP6013_2066	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0100227_38	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0100227_38	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0100227_38	COG	COG0863	DNA modification methylase	NA
UHGV-0100227_39	KOfam	K14392	panF; sodium/pantothenate symporter	NA
UHGV-0100227_39	PHROG	phrog_20720	NA	unknown function
UHGV-0100227_39	UniRef90	UniRef90_A0A174LSL1	Pantothenate permease	NA
UHGV-0100227_39	eggNOG-mapper	457412.RSAG_01152	Sodium:solute symporter family	NA
UHGV-0100227_39	Pfam	PF00474	Sodium:solute symporter family	SSF
UHGV-0100227_39	COG	COG0591	Na+/proline symporter	NA
UHGV-0100227_39	Structural annotation	PF00474, MF_01426, TIGR02121, COG4145	NA	NA
UHGV-0100227_40	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0100227_40	UniRef90	UniRef90_UPI001AD79890	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0100227_40	eggNOG-mapper	1123058.KB894219_gene149	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0100227_40	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0100227_40	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0100227_41	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0100227_41	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0100227_41	UniRef90	UniRef90_A0A1V2RLD8	Putative sulfurtransferase DndC	NA
UHGV-0100227_41	eggNOG-mapper	1288484.APCS01000008_gene1250	NA	NA
UHGV-0100227_41	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0100227_41	Pfam	PF11922	NA	DUF3440
UHGV-0100227_41	COG	COG3969	NA	NA
UHGV-0100227_41	Structural annotation	PF01507, PF11922, MF_00063, NF006327, COG3969	NA	NA
UHGV-0100227_42	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0100227_42	PHROG	phrog_2159	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0100227_42	UniRef90	UniRef90_A0A0Q5LAB9	ParB domain-containing protein	NA
UHGV-0100227_42	eggNOG-mapper	1288484.APCS01000008_gene1249	chromosome segregation	NA
UHGV-0100227_42	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0100227_42	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0100227_42	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0100227_43	UniRef90	UniRef90_UPI00195E0314	phage terminase small subunit-related protein	NA
UHGV-0100227_43	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0100227_43	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0100227_43	COG	COG5484	NA	NA
UHGV-0100227_43	Structural annotation	PF10668, NF040601, COG5484	NA	NA
UHGV-0100227_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0100227_44	PHROG	phrog_10250	NA	unknown function
UHGV-0100227_44	UniRef90	UniRef90_A0A842J0Q2	PBSX family phage terminase large subunit	NA
UHGV-0100227_44	eggNOG-mapper	1511.CLOST_1531	Terminase-like family	NA
UHGV-0100227_44	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0100227_44	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0100227_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-0100227_44	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0100227_45	PHROG	phrog_220	head morphogenesis	head and packaging
UHGV-0100227_45	UniRef90	UniRef90_F8WU64	Phage protein F-like protein	NA
UHGV-0100227_45	eggNOG-mapper	469616.FMAG_02620	NA	NA
UHGV-0100227_45	Pfam	PF06074	NA	DUF935
UHGV-0100227_45	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0100227_45	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0100227_45	COG	COG2369	NA	NA
UHGV-0100227_45	Structural annotation	PF06074, PF04233, MF_04120, TIGR01537, TIGR01641, COG4383	NA	NA
UHGV-0100227_46	PHROG	phrog_26	tail completion or Neck1 protein	connector
UHGV-0100227_46	UniRef90	UniRef90_C3WEU6	Putative phage virion morphogenesis protein	NA
UHGV-0100227_46	eggNOG-mapper	469616.FMAG_01964	Phage virion morphogenesis	NA
UHGV-0100227_46	Pfam	PF05069	Phage virion morphogenesis family	Phage_tail_S
UHGV-0100227_46	COG	COG5005	NA	NA
UHGV-0100227_46	Structural annotation	PF05069, TIGR01635, COG5005	NA	NA
UHGV-0100227_48	eggNOG-mapper	469616.FMAG_02528	NA	NA
UHGV-0100227_48	Structural annotation	PF05929	NA	NA
UHGV-0100227_49	eggNOG-mapper	469616.FMAG_02527	NA	NA
UHGV-0100227_49	Structural annotation	PF02924	NA	NA
UHGV-0100227_50	eggNOG-mapper	1122173.AXVL01000018_gene431	NA	NA
UHGV-0100227_50	Structural annotation	PF03864, MF_04133, NF033394, COG4653	NA	NA
UHGV-0100227_53	PHROG	phrog_1480	tail sheath	tail
UHGV-0100227_53	UniRef90	UniRef90_C3WEV1	Phage_sheath_1C domain-containing protein	NA
UHGV-0100227_53	eggNOG-mapper	469616.FMAG_01969	Phage tail sheath C-terminal domain	NA
UHGV-0100227_53	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0100227_56	PHROG	phrog_365	tail protein	tail
UHGV-0100227_56	UniRef90	UniRef90_UPI001F41529D	phage tail tube protein	NA
UHGV-0100227_56	eggNOG-mapper	469616.FMAG_01971	Phage tail tube protein	NA
UHGV-0100227_56	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0100227_56	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0100227_57	UniRef90	UniRef90_C3WEV4	Phage XkdN-like protein	NA
UHGV-0100227_57	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0100227_58	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0100227_58	UniRef90	UniRef90_UPI001F3CFDD2	phage tail tape measure protein	NA
UHGV-0100227_58	eggNOG-mapper	469616.FMAG_01973	Phage tail tape measure protein, TP901 family	NA
UHGV-0100227_58	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0100227_58	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0100227_58	COG	COG5283	Phage-related tail protein	NA
UHGV-0100227_59	PHROG	phrog_380	endolysin	lysis
UHGV-0100227_59	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0100227_60	PHROG	phrog_400	tail protein	tail
UHGV-0100227_60	UniRef90	UniRef90_A0A2B2CDJ1	NlpC/P60 domain-containing protein	NA
UHGV-0100227_60	eggNOG-mapper	469616.FMAG_01975	Late control gene D protein	NA
UHGV-0100227_60	COG	COG3500	NA	NA
UHGV-0100227_60	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0100227_61	PHROG	phrog_579	NA	unknown function
UHGV-0100227_61	UniRef90	UniRef90_UPI001F1B89B8	NA	NA
UHGV-0100227_61	eggNOG-mapper	469616.FMAG_01976	NA	NA
UHGV-0100227_61	Pfam	PF10844	NA	DUF2577
UHGV-0100227_61	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0100227_62	UniRef90	UniRef90_UPI001F24BFF9	NA	NA
UHGV-0100227_62	eggNOG-mapper	97138.C820_00600	NA	NA
UHGV-0100227_62	Pfam	PF10934	NA	DUF2634
UHGV-0100227_62	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0100227_63	PHROG	phrog_6	baseplate protein	tail
UHGV-0100227_63	UniRef90	UniRef90_C3WEW0	Baseplate_J domain-containing protein	NA
UHGV-0100227_63	eggNOG-mapper	469616.FMAG_01978	Baseplate J-like protein	NA
UHGV-0100227_63	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0100227_63	COG	COG3299	NA	NA
UHGV-0100227_63	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0100227_64	eggNOG-mapper	469616.FMAG_01979	NA	NA