UHGV-0100244

Genome information

Genome length 34,386 bps

CDS count 52

Completeness 99.47% (high-quality)

geNomad score 0.9510

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100244
vOTU ID	vOTU-007819
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_218129
BioSample	SAMEA3541486
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.47% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9510
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.07
Jumbo phage	No

Genome content
Genome length	34,386 bps
GC content	41.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.26%
Average CDS length	608.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100244_3	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0100244_3	PHROG	phrog_894	endolysin	lysis
UHGV-0100244_3	UniRef90	UniRef90_A0A1Q6R3X6	Peptidase_M15_3 domain-containing protein	NA
UHGV-0100244_3	eggNOG-mapper	1121422.AUMW01000002_gene2238	Peptidoglycan-binding domain 1 protein	NA
UHGV-0100244_3	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0100244_3	COG	COG3108	NA	NA
UHGV-0100244_3	Structural annotation	PF08291, NF000086, COG3108	NA	NA
UHGV-0100244_6	KOfam	K14059	int; integrase	NA
UHGV-0100244_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0100244_6	UniRef90	UniRef90_UPI000F0C2855	tyrosine-type recombinase/integrase	NA
UHGV-0100244_6	eggNOG-mapper	1123250.KB908441_gene1622	Phage integrase family	NA
UHGV-0100244_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0100244_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0100244_6	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0100244_7	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0100244_7	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0100244_7	eggNOG-mapper	690850.Desaf_3554	Phage tail assembly chaperone protein	NA
UHGV-0100244_7	Pfam	PF14301	NA	DUF4376
UHGV-0100244_7	Structural annotation	PF14301	NA	NA
UHGV-0100244_8	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0100244_8	UniRef90	UniRef90_A0A3A9I3B0	Collar domain-containing protein	NA
UHGV-0100244_8	eggNOG-mapper	556269.ACDQ01000006_gene1705	Phage Tail Collar Domain	NA
UHGV-0100244_8	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0100244_8	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0100244_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0100244_9	PHROG	phrog_521	tail protein	tail
UHGV-0100244_9	UniRef90	UniRef90_A0A412CHL4	NA	NA
UHGV-0100244_9	eggNOG-mapper	1273103.NM10_00994	NA	NA
UHGV-0100244_9	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0100244_9	COG	COG3778	NA	NA
UHGV-0100244_9	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0100244_10	PHROG	phrog_6	baseplate protein	tail
UHGV-0100244_10	UniRef90	UniRef90_UPI001D09317C	baseplate J/gp47 family protein	NA
UHGV-0100244_10	eggNOG-mapper	1232428.CAVO010000003_gene996	Baseplate J-like protein	NA
UHGV-0100244_10	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0100244_10	COG	COG3299	NA	NA
UHGV-0100244_10	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0100244_11	PHROG	phrog_120	baseplate protein	tail
UHGV-0100244_11	UniRef90	UniRef90_UPI00195EB78C	NA	NA
UHGV-0100244_11	eggNOG-mapper	1232428.CAVO010000003_gene997	NA	NA
UHGV-0100244_11	Pfam	PF10934	NA	DUF2634
UHGV-0100244_11	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0100244_11	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0100244_12	PHROG	phrog_579	NA	unknown function
UHGV-0100244_12	UniRef90	UniRef90_UPI000F8F13CB	NA	NA
UHGV-0100244_12	eggNOG-mapper	1232428.CAVO010000003_gene998	NA	NA
UHGV-0100244_12	Pfam	PF10844	NA	DUF2577
UHGV-0100244_12	Structural annotation	PF10844	NA	NA
UHGV-0100244_13	PHROG	phrog_400	tail protein	tail
UHGV-0100244_13	UniRef90	UniRef90_A0A848BXY8	Lytic transglycosylase domain-containing protein	NA
UHGV-0100244_13	eggNOG-mapper	1232428.CAVO010000003_gene999	NLP P60 protein	NA
UHGV-0100244_13	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0100244_13	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0100244_14	PHROG	phrog_5184	NA	unknown function
UHGV-0100244_14	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-0100244_14	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-0100244_14	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0100244_14	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0100244_14	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0100244_15	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0100244_15	UniRef90	UniRef90_A0A412CHP1	Phage tail tape measure protein	NA
UHGV-0100244_15	eggNOG-mapper	1232428.CAVO010000003_gene1001	Phage-related minor tail protein	NA
UHGV-0100244_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0100244_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0100244_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0100244_15	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0100244_16	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0100244_16	UniRef90	UniRef90_I0GWR7	Phage related protein	NA
UHGV-0100244_16	eggNOG-mapper	568816.Acin_1336	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0100244_16	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0100244_16	Structural annotation	PF08890	NA	NA
UHGV-0100244_17	PHROG	phrog_365	tail protein	tail
UHGV-0100244_17	UniRef90	UniRef90_A0A2S0M4K4	Phage portal protein	NA
UHGV-0100244_17	eggNOG-mapper	1232428.CAVO010000003_gene1003	Phage tail tube protein	NA
UHGV-0100244_17	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0100244_17	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0100244_18	PHROG	phrog_1480	tail sheath	tail
UHGV-0100244_18	UniRef90	UniRef90_UPI00195B2F80	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0100244_18	eggNOG-mapper	1232428.CAVO010000003_gene1004	Phage tail sheath C-terminal domain	NA
UHGV-0100244_18	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0100244_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0100244_18	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0100244_19	PHROG	phrog_525	NA	unknown function
UHGV-0100244_19	eggNOG-mapper	293826.Amet_2419	NA	NA
UHGV-0100244_19	Pfam	PF20765	NA	DUF6838
UHGV-0100244_19	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0100244_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0100244_20	UniRef90	UniRef90_UPI0019591A25	HK97 gp10 family phage protein	NA
UHGV-0100244_20	eggNOG-mapper	1232428.CAVO010000003_gene1006	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0100244_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0100244_20	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0100244_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-0100244_21	UniRef90	UniRef90_UPI001CD5F5A7	phage head closure protein	NA
UHGV-0100244_21	eggNOG-mapper	1095750.HMPREF9970_2271	Phage head-tail joining protein	NA
UHGV-0100244_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0100244_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0100244_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0100244_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0100244_22	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0100244_22	UniRef90	UniRef90_UPI000F0C32B3	head-tail connector protein	NA
UHGV-0100244_22	eggNOG-mapper	1262914.BN533_00195	Phage gp6-like head-tail connector protein	NA
UHGV-0100244_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0100244_22	NCBIFam	TIGR02215.1	phage conserved hypothetical protein, phiE125 gp8 family	NA
UHGV-0100244_22	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-0100244_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0100244_23	UniRef90	UniRef90_UPI000F0C831E	phage major capsid protein	NA
UHGV-0100244_23	eggNOG-mapper	1354722.JQLS01000008_gene1448	Phage capsid family	NA
UHGV-0100244_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0100244_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0100244_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0100244_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0100244_24	KOfam	K06904	NA	NA
UHGV-0100244_24	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0100244_24	UniRef90	UniRef90_UPI000F0CB78B	HK97 family phage prohead protease	NA
UHGV-0100244_24	eggNOG-mapper	1392502.JNIO01000008_gene1310	Caudovirus prohead protease	NA
UHGV-0100244_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0100244_24	COG	COG3087	Cell division protein FtsN	NA
UHGV-0100244_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0100244_25	UniRef90	UniRef90_A0A7X6ZHF9	Phage portal protein	NA
UHGV-0100244_25	eggNOG-mapper	1123288.SOV_6c00350	Phage portal protein	NA
UHGV-0100244_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0100244_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0100244_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0100244_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0100244_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0100244_26	UniRef90	UniRef90_A0A316S9R8	Terminase large subunit	NA
UHGV-0100244_26	eggNOG-mapper	1262914.BN533_00200	terminase, large subunit	NA
UHGV-0100244_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0100244_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0100244_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0100244_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0100244_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0100244_27	UniRef90	UniRef90_A0A7X9I6W6	Phage terminase small subunit P27 family	NA
UHGV-0100244_27	eggNOG-mapper	1501230.ET33_21205	Phage terminase, small subunit	NA
UHGV-0100244_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0100244_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0100244_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0100244_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0100244_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0100244_28	UniRef90	UniRef90_R6IEU0	Holin protein	NA
UHGV-0100244_28	eggNOG-mapper	1262914.BN533_00202	HNH nucleases	NA
UHGV-0100244_28	AcrCatalog	cluster_19695	NA	NA
UHGV-0100244_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0100244_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0100244_28	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0100244_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0100244_29	Structural annotation	PF05263, MF_00245, TIGR01636, COG1595	NA	NA
UHGV-0100244_30	PHROG	phrog_38815	NA	unknown function
UHGV-0100244_31	PHROG	phrog_35896	NA	unknown function
UHGV-0100244_32	PHROG	phrog_36825	NA	unknown function
UHGV-0100244_32	eggNOG-mapper	1262914.BN533_00206	DnaD domain protein	NA
UHGV-0100244_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0100244_32	Structural annotation	PF19481, PF04492, TIGR01610, COG5529	NA	NA
UHGV-0100244_33	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0100244_33	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0100244_33	UniRef90	UniRef90_R6IEU2	DNA polymerase III subunit beta	NA
UHGV-0100244_33	eggNOG-mapper	997296.PB1_07282	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0100244_33	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-0100244_33	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0100244_33	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0100244_33	Structural annotation	PF02768, PF00712, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0100244_35	Pfam	PF01476	LysM domain	LysM
UHGV-0100244_35	COG	COG1388	LysM repeat	NA
UHGV-0100244_35	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0100244_43	PHROG	phrog_3773	NA	unknown function
UHGV-0100244_45	Structural annotation	PF13033	NA	NA
UHGV-0100244_46	UniRef90	UniRef90_A0A5C4TGT4	XRE family transcriptional regulator	NA
UHGV-0100244_46	eggNOG-mapper	1280692.AUJL01000011_gene3217	NA	NA
UHGV-0100244_46	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0100244_47	UniRef90	UniRef90_A0A416KE51	XRE family transcriptional regulator	NA
UHGV-0100244_47	eggNOG-mapper	1507.HMPREF0262_01301	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0100244_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0100244_47	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0100244_48	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0100244_48	PHROG	phrog_8036	NA	unknown function
UHGV-0100244_48	UniRef90	UniRef90_A0A3C1INR2	Damage-inducible protein D	NA
UHGV-0100244_48	eggNOG-mapper	340.xcc-b100_1250	BRO family, N-terminal domain	NA
UHGV-0100244_48	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0100244_48	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0100244_48	COG	COG3617	Prophage antirepressor	NA
UHGV-0100244_48	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-0100244_49	UniRef90	UniRef90_E2Z9S9	Bro-N domain-containing protein	NA
UHGV-0100244_49	eggNOG-mapper	706434.HMPREF9429_00185	Virulence protein RhuM family	NA
UHGV-0100244_49	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0100244_49	COG	COG3943	NA	NA
UHGV-0100244_49	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-0100244_50	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0100244_50	PHROG	phrog_8036	NA	unknown function
UHGV-0100244_50	UniRef90	UniRef90_A0A1M4UFY1	DNA-damage-inducible protein D	NA
UHGV-0100244_50	eggNOG-mapper	1410612.JNKO01000002_gene2330	NA	NA
UHGV-0100244_50	AcrCatalog	cluster_17589	NA	NA
UHGV-0100244_50	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0100244_50	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0100244_50	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0100244_50	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0100244_50	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0100244_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0100244_52	PHROG	phrog_95	integrase	integration and excision
UHGV-0100244_52	UniRef90	UniRef90_A0A1Y4B4X9	DNA integration/recombination protein	NA
UHGV-0100244_52	eggNOG-mapper	1203606.HMPREF1526_01314	Resolvase, N terminal domain	NA
UHGV-0100244_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0100244_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-0100244_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0100244_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0100244_52	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA