UHGV-0100308

Genome information

Genome length 47,415 bps

CDS count 87

Completeness 100.00% (complete)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100308
vOTU ID	vOTU-045428
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_233417
BioSample	SAMEA3708471
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.92
Jumbo phage	No

Genome content
Genome length	47,415 bps
GC content	50.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	87
CDS density	86.87%
Average CDS length	475.97 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100308_1	PHROG	phrog_4433	NA	unknown function
UHGV-0100308_1	eggNOG-mapper	619693.HMPREF6745_2502	DNA-templated transcription, initiation	NA
UHGV-0100308_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0100308_3	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0100308_3	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0100308_11	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0100308_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0100308_11	UniRef90	UniRef90_A0A1Y4HLG9	HTH cro/C1-type domain-containing protein	NA
UHGV-0100308_11	eggNOG-mapper	521095.Apar_0552	sequence-specific DNA binding	NA
UHGV-0100308_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100308_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0100308_11	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-0100308_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0100308_12	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0100308_12	UniRef90	UniRef90_A0A1Y4HNZ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0100308_12	eggNOG-mapper	1121448.DGI_0915	sequence-specific DNA binding	NA
UHGV-0100308_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100308_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0100308_12	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0100308_13	UniRef90	UniRef90_UPI001EDE047F	phage minor capsid protein	NA
UHGV-0100308_13	Structural annotation	PF06152	NA	NA
UHGV-0100308_15	PHROG	phrog_2546	NA	unknown function
UHGV-0100308_15	UniRef90	UniRef90_UPI0008A4E921	ribosomal protein L7/L12	NA
UHGV-0100308_15	eggNOG-mapper	1582156.A0A0A8WFW4_9CAUD	NA	NA
UHGV-0100308_15	Structural annotation	PF13240, TIGR04165	NA	NA
UHGV-0100308_16	KOfam	K14059	int; integrase	NA
UHGV-0100308_16	PHROG	phrog_1	integrase	integration and excision
UHGV-0100308_16	UniRef90	UniRef90_A0A417H7X9	Site-specific integrase	NA
UHGV-0100308_16	eggNOG-mapper	1408437.JNJN01000084_gene1284	Belongs to the 'phage' integrase family	NA
UHGV-0100308_16	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0100308_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0100308_16	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0100308_16	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0100308_17	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0100308_18	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0100308_19	PHROG	phrog_16490	NA	unknown function
UHGV-0100308_19	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0100308_21	eggNOG-mapper	1408437.JNJN01000043_gene805	NA	NA
UHGV-0100308_23	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0100308_23	PHROG	phrog_670	endolysin	lysis
UHGV-0100308_23	UniRef90	UniRef90_A0A2V2FIF5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0100308_23	eggNOG-mapper	1408437.JNJN01000008_gene890	Ami_2	NA
UHGV-0100308_23	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0100308_23	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0100308_23	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0100308_24	PHROG	phrog_199	holin	lysis
UHGV-0100308_24	UniRef90	UniRef90_A0A3E2XXQ8	Holin	NA
UHGV-0100308_24	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-0100308_24	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0100308_24	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0100308_24	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0100308_24	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0100308_27	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0100308_28	PHROG	phrog_10898	NA	unknown function
UHGV-0100308_28	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0100308_28	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-0100308_28	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-0100308_28	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0100308_29	Structural annotation	PF10651, COG5456	NA	NA
UHGV-0100308_31	PHROG	phrog_32744	NA	unknown function
UHGV-0100308_31	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0100308_31	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0100308_31	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0100308_32	PHROG	phrog_1194	NA	unknown function
UHGV-0100308_32	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-0100308_32	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0100308_33	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-0100308_33	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0100308_33	UniRef90	UniRef90_A0A1C5N801	ATPase involved in DNA repair	NA
UHGV-0100308_33	eggNOG-mapper	1158612.I580_01921	SLT domain	NA
UHGV-0100308_33	COG	COG1511	NA	NA
UHGV-0100308_34	PHROG	phrog_706	NA	unknown function
UHGV-0100308_34	UniRef90	UniRef90_UPI00164ABC94	Gp15 family bacteriophage protein	NA
UHGV-0100308_34	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0100308_34	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0100308_34	Structural annotation	PF06854	NA	NA
UHGV-0100308_35	PHROG	phrog_11299	NA	unknown function
UHGV-0100308_35	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-0100308_35	Structural annotation	PF10666	NA	NA
UHGV-0100308_36	PHROG	phrog_3099	NA	unknown function
UHGV-0100308_36	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-0100308_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0100308_37	PHROG	phrog_3266	tail completion	connector
UHGV-0100308_37	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0100308_37	Structural annotation	PF12691	NA	NA
UHGV-0100308_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0100308_38	UniRef90	UniRef90_UPI0006C7F62A	minor capsid protein	NA
UHGV-0100308_38	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0100308_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0100308_38	Structural annotation	PF11114	NA	NA
UHGV-0100308_39	PHROG	phrog_3366	NA	unknown function
UHGV-0100308_39	eggNOG-mapper	1120746.CCNL01000014_gene2099	NA	NA
UHGV-0100308_39	Pfam	PF20536	NA	DUF6751
UHGV-0100308_39	Structural annotation	PF20536, COG5437	NA	NA
UHGV-0100308_40	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0100308_40	UniRef90	UniRef90_A0A417HAG8	Minor capsid protein	NA
UHGV-0100308_40	eggNOG-mapper	545697.HMPREF0216_02846	Phage minor capsid protein 2	NA
UHGV-0100308_40	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0100308_40	COG	COG2369	NA	NA
UHGV-0100308_40	Structural annotation	PF06152	NA	NA
UHGV-0100308_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0100308_41	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0100308_42	PHROG	phrog_29	major head protein	head and packaging
UHGV-0100308_42	UniRef90	UniRef90_UPI0004AE1FFD	major capsid protein	NA
UHGV-0100308_42	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0100308_42	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0100308_42	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0100308_43	PHROG	phrog_909	major head protein	head and packaging
UHGV-0100308_43	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0100308_43	eggNOG-mapper	1078085.HMPREF1210_01145	NA	NA
UHGV-0100308_43	Structural annotation	PF02924	NA	NA
UHGV-0100308_44	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0100308_44	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0100308_44	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0100308_44	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0100308_44	Structural annotation	PF06810	NA	NA
UHGV-0100308_46	PHROG	phrog_533	portal protein	head and packaging
UHGV-0100308_46	UniRef90	UniRef90_A0A417HAG6	Phage portal protein	NA
UHGV-0100308_46	eggNOG-mapper	1232443.BAIA02000078_gene36	NA	NA
UHGV-0100308_46	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0100308_46	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0100308_47	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0100308_47	PHROG	phrog_10250	NA	unknown function
UHGV-0100308_47	UniRef90	UniRef90_E2ZNR1	Phage terminase, large subunit, PBSX family	NA
UHGV-0100308_47	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0100308_47	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0100308_47	COG	COG1783	Phage terminase large subunit	NA
UHGV-0100308_50	eggNOG-mapper	446462.Amir_3266	NA	NA
UHGV-0100308_51	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0100308_51	UniRef90	UniRef90_A0A417HAM3	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0100308_51	eggNOG-mapper	358220.C380_09765	sulfate reduction	NA
UHGV-0100308_51	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0100308_51	Structural annotation	PF01507, MF_00345, NF006351, COG0175	NA	NA
UHGV-0100308_52	PHROG	phrog_13890	NA	unknown function
UHGV-0100308_52	UniRef90	UniRef90_A0A3A8Z2N2	ABC transporter ATP-binding protein	NA
UHGV-0100308_52	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-0100308_52	Structural annotation	PF19807, NF010256, COG4453	NA	NA
UHGV-0100308_54	Structural annotation	PF00512	NA	NA
UHGV-0100308_56	UniRef90	UniRef90_UPI00166A7EE7	helix-turn-helix domain-containing protein	NA
UHGV-0100308_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100308_56	Structural annotation	PF01381, NF040522	NA	NA
UHGV-0100308_57	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0100308_57	eggNOG-mapper	1095750.HMPREF9970_2261	NA	NA
UHGV-0100308_57	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0100308_63	PHROG	phrog_25385	NA	unknown function
UHGV-0100308_63	eggNOG-mapper	476272.RUMHYD_03328	NA	NA
UHGV-0100308_65	PHROG	phrog_7839	NA	unknown function
UHGV-0100308_65	eggNOG-mapper	665956.HMPREF1032_03091	NA	NA
UHGV-0100308_65	Structural annotation	PF08860	NA	NA
UHGV-0100308_66	PHROG	phrog_774	NA	unknown function
UHGV-0100308_66	UniRef90	UniRef90_U4KJB1	NA	NA
UHGV-0100308_66	eggNOG-mapper	1435051.BMOU_0242	Helix-turn-helix domain	NA
UHGV-0100308_66	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0100308_67	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0100308_67	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0100308_67	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0100308_67	Structural annotation	PF14359	NA	NA
UHGV-0100308_69	PHROG	phrog_474	phosphofructokinase	other
UHGV-0100308_69	UniRef90	UniRef90_A0A2V2FHD6	NA	NA
UHGV-0100308_69	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0100308_69	Pfam	PF19905	NA	DUF6378
UHGV-0100308_69	Structural annotation	PF19905	NA	NA
UHGV-0100308_70	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0100308_70	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0100308_70	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0100308_74	PHROG	phrog_7964	NA	unknown function
UHGV-0100308_74	UniRef90	UniRef90_B0PAM0	Bacterial transferase hexapeptide repeat protein	NA
UHGV-0100308_74	eggNOG-mapper	445972.ANACOL_01820	COG NOG06285 non supervised orthologous group	NA
UHGV-0100308_74	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0100308_74	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0100308_74	Structural annotation	NF040481	NA	NA
UHGV-0100308_76	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0100308_76	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0100308_76	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0100308_76	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0100308_77	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0100308_77	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0100308_77	UniRef90	UniRef90_A0A2U1CFM2	Methyltransferase	NA
UHGV-0100308_77	eggNOG-mapper	35241.Q9XJE8_BPTU2	helicase activity	NA
UHGV-0100308_77	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0100308_77	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0100308_77	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0100308_78	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0100308_78	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0100308_78	UniRef90	UniRef90_A0A417H6W1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0100308_78	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0100308_78	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0100308_78	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0100308_79	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0100308_79	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-0100308_79	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0100308_79	Structural annotation	PF10771, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-0100308_80	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0100308_80	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0100308_80	UniRef90	UniRef90_A0A417H728	Single-stranded DNA-binding protein	NA
UHGV-0100308_80	eggNOG-mapper	1408437.JNJN01000012_gene314	Single-stranded DNA-binding protein	NA
UHGV-0100308_80	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0100308_80	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0100308_80	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0100308_80	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0100308_80	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0100308_81	PHROG	phrog_20891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0100308_81	UniRef90	UniRef90_A0A417H726	HNH endonuclease	NA
UHGV-0100308_81	eggNOG-mapper	521000.PROVRETT_05968	HNH endonuclease	NA
UHGV-0100308_81	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0100308_81	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0100308_81	Structural annotation	PF13392, PF13384, TIGR04381, COG2771	NA	NA
UHGV-0100308_82	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0100308_82	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0100308_82	UniRef90	UniRef90_A0A845MWL0	HNHc domain-containing protein	NA
UHGV-0100308_82	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0100308_82	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0100308_83	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0100308_83	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0100308_83	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0100308_83	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0100308_84	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0100308_84	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0100308_87	PHROG	phrog_27197	NA	unknown function
UHGV-0100308_87	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0100308_87	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0100308_87	Structural annotation	NF007410	NA	NA