UHGV-0100321

Genome information

vOTU vOTU-072071

Genome length 32,133 bps

CDS count 45

Completeness 96.97% (high-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100321
vOTU ID	vOTU-072071
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_204040
BioSample	SAMEA3449357
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.7
Jumbo phage	No

Genome content
Genome length	32,133 bps
GC content	44.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.50%
Average CDS length	678.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100321_1	PHROG	phrog_4105	NA	unknown function
UHGV-0100321_1	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0100321_3	PHROG	phrog_19280	NA	unknown function
UHGV-0100321_3	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0100321_3	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0100321_4	PHROG	phrog_1401	NA	unknown function
UHGV-0100321_4	Structural annotation	PF07761	NA	NA
UHGV-0100321_6	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0100321_6	UniRef90	UniRef90_R6GLF8	Phage minor structural protein region	NA
UHGV-0100321_6	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0100321_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0100321_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0100321_6	COG	COG4926	Phage-related protein	NA
UHGV-0100321_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0100321_7	UniRef90	UniRef90_R6GVG8	Phage putative tail component N-domain protein	NA
UHGV-0100321_7	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0100321_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0100321_7	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0100321_8	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0100321_8	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0100321_8	UniRef90	UniRef90_UPI0009F550A6	phage tail tape measure protein	NA
UHGV-0100321_8	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-0100321_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0100321_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0100321_8	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0100321_9	eggNOG-mapper	1415774.U728_1245	NA	NA
UHGV-0100321_10	eggNOG-mapper	411468.CLOSCI_00542	NA	NA
UHGV-0100321_10	Structural annotation	PF17388	NA	NA
UHGV-0100321_11	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0100321_11	UniRef90	UniRef90_A0A401UUY1	S-l_SbsC_C domain-containing protein	NA
UHGV-0100321_11	eggNOG-mapper	588581.Cpap_1267	NA	NA
UHGV-0100321_11	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0100321_11	Structural annotation	PF18316, PF09393, TIGR01603, COG5437	NA	NA
UHGV-0100321_12	PHROG	phrog_78	tail terminator	connector
UHGV-0100321_12	UniRef90	UniRef90_T0U477	Prophage pi2 protein 38	NA
UHGV-0100321_12	eggNOG-mapper	1384066.JAGT01000001_gene933	NA	NA
UHGV-0100321_12	Structural annotation	PF20765	NA	NA
UHGV-0100321_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0100321_13	UniRef90	UniRef90_UPI000C7BEE97	HK97 gp10 family phage protein	NA
UHGV-0100321_13	eggNOG-mapper	1122146.AUHP01000010_gene1062	NA	NA
UHGV-0100321_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0100321_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0100321_14	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0100321_14	UniRef90	UniRef90_A0A355JF93	Phage head-tail adapter protein	NA
UHGV-0100321_14	eggNOG-mapper	1111134.HMPREF1253_0380	head-tail adaptor	NA
UHGV-0100321_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0100321_14	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0100321_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0100321_15	PHROG	phrog_5223	neck protein	connector
UHGV-0100321_15	UniRef90	UniRef90_A0A174XIL0	NA	NA
UHGV-0100321_15	eggNOG-mapper	411468.CLOSCI_00547	NA	NA
UHGV-0100321_16	UniRef90	UniRef90_A0A8G1TFU0	S-l_SbsC_C domain-containing protein	NA
UHGV-0100321_16	eggNOG-mapper	86416.Clopa_0341	Phage capsid family	NA
UHGV-0100321_16	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0100321_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0100321_16	Structural annotation	PF18316	NA	NA
UHGV-0100321_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0100321_17	UniRef90	UniRef90_A0A355JDD3	Phage major capsid protein	NA
UHGV-0100321_17	eggNOG-mapper	411468.CLOSCI_00548	Phage capsid family	NA
UHGV-0100321_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0100321_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0100321_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0100321_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0100321_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0100321_18	UniRef90	UniRef90_A0A355JF79	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0100321_18	eggNOG-mapper	1382358.JHVN01000024_gene1706	Serine dehydrogenase proteinase	NA
UHGV-0100321_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0100321_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0100321_18	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0100321_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0100321_19	UniRef90	UniRef90_A0A355JF89	Phage portal protein	NA
UHGV-0100321_19	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-0100321_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0100321_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0100321_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0100321_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0100321_20	UniRef90	UniRef90_A0A355JE04	Terminase large subunit	NA
UHGV-0100321_20	eggNOG-mapper	411468.CLOSCI_00551	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0100321_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0100321_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0100321_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0100321_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0100321_21	PHROG	phrog_1066	NA	unknown function
UHGV-0100321_21	eggNOG-mapper	397290.C810_00417	NA	NA
UHGV-0100321_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0100321_22	PHROG	phrog_31049	NA	unknown function
UHGV-0100321_22	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-0100321_22	Structural annotation	TIGR01636	NA	NA
UHGV-0100321_23	PHROG	phrog_24368	NA	unknown function
UHGV-0100321_23	eggNOG-mapper	742740.HMPREF9474_04313	NA	NA
UHGV-0100321_24	PHROG	phrog_824	NA	unknown function
UHGV-0100321_24	UniRef90	UniRef90_A0A3R6I6C8	VRR-NUC domain-containing protein	NA
UHGV-0100321_24	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0100321_24	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0100321_24	Structural annotation	PF08774	NA	NA
UHGV-0100321_25	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0100321_25	eggNOG-mapper	1519439.JPJG01000060_gene1883	NA	NA
UHGV-0100321_25	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0100321_26	PHROG	phrog_15609	NA	unknown function
UHGV-0100321_26	UniRef90	UniRef90_UPI0018C76927	NA	NA
UHGV-0100321_26	eggNOG-mapper	1232428.CAVO010000003_gene1018	NA	NA
UHGV-0100321_26	Pfam	PF11300	NA	DUF3102
UHGV-0100321_26	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0100321_26	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0100321_27	PHROG	phrog_8470	NA	unknown function
UHGV-0100321_27	UniRef90	UniRef90_UPI00164B8CC7	PcfJ domain-containing protein	NA
UHGV-0100321_27	eggNOG-mapper	693746.OBV_25400	PcfJ-like protein	NA
UHGV-0100321_27	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0100321_27	Structural annotation	PF14284	NA	NA
UHGV-0100321_28	PHROG	phrog_38338	NA	unknown function
UHGV-0100321_28	UniRef90	UniRef90_UPI00137B3A8C	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0100321_28	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-0100321_30	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0100321_30	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0100321_30	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0100321_32	PHROG	phrog_10714	NA	unknown function
UHGV-0100321_32	UniRef90	UniRef90_R5R2P7	DNA polymerase II large subunit	NA
UHGV-0100321_32	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0100321_33	Pfam	PF01476	LysM domain	LysM
UHGV-0100321_33	COG	COG1388	LysM repeat	NA
UHGV-0100321_36	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0100321_37	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0100321_37	UniRef90	UniRef90_A0A2V2FYC9	HTH cro/C1-type domain-containing protein	NA
UHGV-0100321_37	eggNOG-mapper	218284.CCDN010000002_gene2385	Helix-turn-helix XRE-family like proteins	NA
UHGV-0100321_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100321_37	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0100321_37	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0100321_38	PHROG	phrog_750	NA	unknown function
UHGV-0100321_38	eggNOG-mapper	478749.BRYFOR_08527	NA	NA
UHGV-0100321_38	Structural annotation	PF03444, COG5045	NA	NA
UHGV-0100321_39	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0100321_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0100321_40	UniRef90	UniRef90_A0A2V2F4F9	Transcriptional regulator	NA
UHGV-0100321_40	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-0100321_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100321_41	PHROG	phrog_1914	NA	unknown function
UHGV-0100321_41	UniRef90	UniRef90_A0A2V2EYS6	Peptidase_M78 domain-containing protein	NA
UHGV-0100321_41	eggNOG-mapper	445971.ANASTE_00176	IrrE N-terminal-like domain	NA
UHGV-0100321_41	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0100321_41	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0100321_41	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0100321_42	KOfam	K03763	polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]	NA
UHGV-0100321_42	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0100321_42	UniRef90	UniRef90_A0A4Q5EM50	Exonuclease	NA
UHGV-0100321_42	eggNOG-mapper	537013.CLOSTMETH_02498	EXOIII	NA
UHGV-0100321_42	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0100321_42	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0100321_42	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0100321_42	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0100321_42	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0100321_42	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0100321_43	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0100321_43	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0100321_43	UniRef90	UniRef90_UPI000C08A710	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0100321_43	eggNOG-mapper	1514668.JOOA01000001_gene181	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0100321_43	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0100321_43	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0100321_43	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0100321_44	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0100321_44	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0100321_44	UniRef90	UniRef90_UPI000C07CF86	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0100321_44	eggNOG-mapper	1120998.AUFC01000028_gene2410	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0100321_44	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0100321_44	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0100321_44	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0100321_45	KOfam	K14059	int; integrase	NA
UHGV-0100321_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0100321_45	UniRef90	UniRef90_A0A7X5KR99	Site-specific integrase	NA
UHGV-0100321_45	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0100321_45	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0100321_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0100321_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0100321_45	Structural annotation	PF00589, PF02899, MF_01808, TIGR02225, COG4973	NA	NA