UHGV-0100347

Genome information

Genome length 40,870 bps

CDS count 69

Completeness 100.00% (complete)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100347
vOTU ID	vOTU-045429
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_208531
BioSample	SAMEA3449267
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.28
Jumbo phage	No

Genome content
Genome length	40,870 bps
GC content	53.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	89.29%
Average CDS length	531.74 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100347_2	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0100347_2	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0100347_2	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0100347_2	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0100347_2	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0100347_2	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0100347_3	PHROG	phrog_21498	NA	unknown function
UHGV-0100347_3	UniRef90	UniRef90_F0NXT0	ParB-like nuclease	NA
UHGV-0100347_3	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0100347_3	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0100347_3	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0100347_4	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0100347_4	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0100347_4	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0100347_4	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0100347_4	COG	COG2369	NA	NA
UHGV-0100347_4	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0100347_5	PHROG	phrog_64	portal protein	head and packaging
UHGV-0100347_5	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0100347_5	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0100347_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0100347_5	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0100347_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0100347_6	PHROG	phrog_10250	NA	unknown function
UHGV-0100347_6	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0100347_6	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0100347_6	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0100347_6	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0100347_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0100347_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0100347_6	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0100347_7	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0100347_7	UniRef90	UniRef90_UPI001C02EFD1	DNA-packaging protein	NA
UHGV-0100347_7	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0100347_7	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0100347_7	Structural annotation	PF16677	NA	NA
UHGV-0100347_9	PHROG	phrog_8680	NA	unknown function
UHGV-0100347_9	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0100347_9	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0100347_9	Pfam	PF14386	NA	DUF4417
UHGV-0100347_9	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0100347_9	Structural annotation	PF14386	NA	NA
UHGV-0100347_10	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0100347_10	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0100347_11	Structural annotation	PF14354	NA	NA
UHGV-0100347_12	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0100347_12	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0100347_12	UniRef90	UniRef90_UPI0012DF3C2B	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0100347_12	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0100347_12	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0100347_12	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0100347_12	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0100347_14	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0100347_14	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0100347_14	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0100347_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0100347_14	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0100347_16	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0100347_17	PHROG	phrog_16304	NA	unknown function
UHGV-0100347_17	UniRef90	UniRef90_A0A3F3JUK4	NA	NA
UHGV-0100347_17	Pfam	PF19808	NA	DUF6291
UHGV-0100347_17	Structural annotation	PF19808	NA	NA
UHGV-0100347_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0100347_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0100347_18	UniRef90	UniRef90_UPI001C00AA91	single-stranded DNA-binding protein	NA
UHGV-0100347_18	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0100347_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0100347_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0100347_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0100347_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0100347_18	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0100347_19	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0100347_19	UniRef90	UniRef90_A0A6N7W7U3	Recombinase RecT	NA
UHGV-0100347_19	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0100347_19	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0100347_23	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0100347_24	Structural annotation	PF14120	NA	NA
UHGV-0100347_25	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0100347_27	PHROG	phrog_4433	NA	unknown function
UHGV-0100347_27	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-0100347_27	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0100347_27	Structural annotation	PF12120, NF007410	NA	NA
UHGV-0100347_29	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0100347_29	UniRef90	UniRef90_UPI001C039A6C	ORF6C domain-containing protein	NA
UHGV-0100347_29	eggNOG-mapper	565664.EFXG_01142	ORF6C domain	NA
UHGV-0100347_29	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0100347_29	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0100347_29	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0100347_29	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0100347_29	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0100347_30	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0100347_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0100347_30	UniRef90	UniRef90_UPI0012DC3E77	helix-turn-helix domain-containing protein	NA
UHGV-0100347_30	eggNOG-mapper	1280706.AUJE01000017_gene127	sequence-specific DNA binding	NA
UHGV-0100347_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100347_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0100347_30	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0100347_31	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0100347_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100347_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0100347_31	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0100347_32	Structural annotation	PF21715, NF008122, COG1846	NA	NA
UHGV-0100347_35	eggNOG-mapper	321955.AAGP01000017_gene2211	NA	NA
UHGV-0100347_35	Structural annotation	PF16900, NF040991	NA	NA
UHGV-0100347_36	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0100347_36	UniRef90	UniRef90_A0A3A9G8M1	Zinc-ribbon domain-containing protein	NA
UHGV-0100347_36	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0100347_36	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0100347_36	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0100347_36	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0100347_39	UniRef90	UniRef90_UPI0018CC79B4	helix-turn-helix domain-containing protein	NA
UHGV-0100347_39	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0100347_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100347_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0100347_39	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0100347_40	KOfam	K14059	int; integrase	NA
UHGV-0100347_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0100347_40	UniRef90	UniRef90_UPI0012DD7FDB	site-specific integrase	NA
UHGV-0100347_40	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0100347_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0100347_40	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0100347_40	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0100347_42	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0100347_43	PHROG	phrog_16490	NA	unknown function
UHGV-0100347_44	PHROG	phrog_22984	NA	unknown function
UHGV-0100347_47	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0100347_47	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0100347_48	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0100347_48	UniRef90	UniRef90_UPI001C0BF339	transcriptional regulator	NA
UHGV-0100347_48	eggNOG-mapper	887929.HMP0721_2409	NA	NA
UHGV-0100347_48	Structural annotation	PF00847	NA	NA
UHGV-0100347_51	PHROG	phrog_15303	NA	unknown function
UHGV-0100347_52	PHROG	phrog_1863	NA	unknown function
UHGV-0100347_52	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0100347_53	KOfam	K07273	acm; lysozyme	NA
UHGV-0100347_53	PHROG	phrog_291	endolysin	lysis
UHGV-0100347_53	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0100347_53	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0100347_53	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0100347_53	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0100347_53	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0100347_54	Structural annotation	NF040910	NA	NA
UHGV-0100347_56	PHROG	phrog_6465	tail protein	tail
UHGV-0100347_56	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-0100347_56	eggNOG-mapper	508419.F8J176_9CAUD	peptidoglycan catabolic process	NA
UHGV-0100347_56	Structural annotation	COG4675	NA	NA
UHGV-0100347_57	PHROG	phrog_23587	NA	unknown function
UHGV-0100347_57	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0100347_57	COG	COG5492	NA	NA
UHGV-0100347_57	Structural annotation	MF_04106	NA	NA
UHGV-0100347_58	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0100347_58	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0100347_58	COG	COG4722	Phage-related protein YomH	NA
UHGV-0100347_58	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0100347_60	PHROG	phrog_3558	tail protein	tail
UHGV-0100347_60	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0100347_60	eggNOG-mapper	1120933.ATUY01000004_gene1009	Prophage endopeptidase tail	NA
UHGV-0100347_60	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0100347_60	COG	COG4926	Phage-related protein	NA
UHGV-0100347_60	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0100347_61	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0100347_61	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-0100347_61	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0100347_61	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0100347_61	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0100347_61	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0100347_61	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0100347_64	PHROG	phrog_885	major tail protein	tail
UHGV-0100347_64	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0100347_64	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0100347_65	Structural annotation	PF13554	NA	NA
UHGV-0100347_66	PHROG	phrog_17977	NA	unknown function
UHGV-0100347_66	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0100347_66	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0100347_68	PHROG	phrog_544	major head protein	head and packaging
UHGV-0100347_68	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0100347_68	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0100347_68	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA