UHGV-0100385

Genome information

Genome length 30,184 bps

CDS count 36

Completeness 67.80% (medium-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100385
vOTU ID	vOTU-040484
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_230340
BioSample	SAMEA3708628
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.93
Jumbo phage	No

Genome content
Genome length	30,184 bps
GC content	40.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	92.00%
Average CDS length	774.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100385_1	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0100385_1	PHROG	phrog_10292	NA	unknown function
UHGV-0100385_1	UniRef90	UniRef90_C7GC51	TM2 domain protein	NA
UHGV-0100385_1	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0100385_1	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0100385_1	Pfam	PF05154	TM2 domain	TM2
UHGV-0100385_1	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0100385_1	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0100385_2	eggNOG-mapper	665956.HMPREF1032_03591	NA	NA
UHGV-0100385_3	KOfam	K14059	int; integrase	NA
UHGV-0100385_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0100385_3	UniRef90	UniRef90_A0A3R6FU66	Site-specific integrase	NA
UHGV-0100385_3	eggNOG-mapper	1321782.HMPREF1986_00315	Phage integrase family	NA
UHGV-0100385_3	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0100385_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0100385_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0100385_3	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0100385_4	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0100385_4	PHROG	phrog_7	endolysin	lysis
UHGV-0100385_4	UniRef90	UniRef90_A0A3R6HYB3	Lysozyme	NA
UHGV-0100385_4	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0100385_4	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0100385_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0100385_4	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0100385_4	HAMAP	MF_04110	Endolysin	NA
UHGV-0100385_4	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-0100385_5	PHROG	phrog_199	holin	lysis
UHGV-0100385_5	UniRef90	UniRef90_A0A414REB4	Holin	NA
UHGV-0100385_5	eggNOG-mapper	1235799.C818_04239	Bacteriophage holin family	NA
UHGV-0100385_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0100385_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0100385_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0100385_6	PHROG	phrog_17196	kinase	other
UHGV-0100385_6	UniRef90	UniRef90_A0A3R6GQJ1	Peptidase S74 domain-containing protein	NA
UHGV-0100385_6	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0100385_6	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0100385_8	PHROG	phrog_18190	NA	unknown function
UHGV-0100385_8	UniRef90	UniRef90_C7GBZ4	Peptidase S74 domain-containing protein	NA
UHGV-0100385_8	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0100385_8	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0100385_8	Structural annotation	PF05113, PF13884, NF033848, COG3500	NA	NA
UHGV-0100385_9	PHROG	phrog_1194	NA	unknown function
UHGV-0100385_9	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0100385_9	Pfam	PF20458	NA	DUF6711
UHGV-0100385_9	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0100385_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0100385_10	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-0100385_10	COG	COG5283	Phage-related tail protein	NA
UHGV-0100385_11	PHROG	phrog_706	NA	unknown function
UHGV-0100385_11	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0100385_11	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0100385_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0100385_11	Structural annotation	PF06854	NA	NA
UHGV-0100385_12	PHROG	phrog_11299	NA	unknown function
UHGV-0100385_12	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0100385_12	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-0100385_12	Pfam	PF20378	NA	DUF6673
UHGV-0100385_12	Structural annotation	PF10666	NA	NA
UHGV-0100385_13	PHROG	phrog_3099	NA	unknown function
UHGV-0100385_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0100385_14	PHROG	phrog_3266	tail completion	connector
UHGV-0100385_14	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-0100385_14	Structural annotation	PF12691	NA	NA
UHGV-0100385_15	PHROG	phrog_3366	NA	unknown function
UHGV-0100385_15	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0100385_15	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0100385_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0100385_16	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0100385_16	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-0100385_17	PHROG	phrog_247	major head protein	head and packaging
UHGV-0100385_17	UniRef90	UniRef90_A0A3R6GNQ1	Phage coat protein	NA
UHGV-0100385_17	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0100385_17	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0100385_17	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0100385_17	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0100385_18	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0100385_20	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-0100385_20	UniRef90	UniRef90_A0A3R6DFQ5	ORF6N domain-containing protein	NA
UHGV-0100385_20	eggNOG-mapper	999413.HMPREF1094_02023	ORF6C domain	NA
UHGV-0100385_20	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0100385_20	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0100385_21	UniRef90	UniRef90_UPI00189C117A	toxin-antitoxin system, antitoxin component, Xre family protein	NA
UHGV-0100385_21	eggNOG-mapper	610130.Closa_0843	NA	NA
UHGV-0100385_21	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0100385_22	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0100385_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0100385_22	UniRef90	UniRef90_A0A3R6HYC4	XRE family transcriptional regulator	NA
UHGV-0100385_22	eggNOG-mapper	610130.Closa_0842	Helix-turn-helix XRE-family like proteins	NA
UHGV-0100385_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100385_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0100385_24	UniRef90	UniRef90_A0A413YTH6	ACB domain-containing protein	NA
UHGV-0100385_25	UniRef90	UniRef90_R6BU26	Peptidyl-dipeptidase Dcp	NA
UHGV-0100385_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0100385_26	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0100385_26	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0100385_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0100385_26	COG	COG2369	NA	NA
UHGV-0100385_26	Structural annotation	PF06152	NA	NA
UHGV-0100385_27	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0100385_27	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0100385_27	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0100385_27	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0100385_27	Structural annotation	PF11114	NA	NA
UHGV-0100385_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0100385_29	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-0100385_29	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0100385_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0100385_30	PHROG	phrog_1233	NA	unknown function
UHGV-0100385_30	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0100385_30	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0100385_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0100385_31	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0100385_31	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-0100385_31	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0100385_31	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0100385_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0100385_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0100385_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0100385_31	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0100385_32	PHROG	phrog_9479	NA	unknown function
UHGV-0100385_32	Structural annotation	PF15529	NA	NA
UHGV-0100385_34	PHROG	phrog_8680	NA	unknown function
UHGV-0100385_34	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-0100385_34	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0100385_34	Pfam	PF14386	NA	DUF4417
UHGV-0100385_34	Structural annotation	PF14386	NA	NA
UHGV-0100385_35	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0100385_35	UniRef90	UniRef90_A0A414RA62	NA	NA
UHGV-0100385_35	eggNOG-mapper	1492737.FEM08_36380	NA	NA
UHGV-0100385_35	Pfam	PF13643	NA	DUF4145
UHGV-0100385_35	Structural annotation	PF13643, COG1895	NA	NA