UHGV-0100406

Genome information

Genome length 21,943 bps

CDS count 39

Completeness 58.44% (medium-quality)

geNomad score 0.9554

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100406
vOTU ID	vOTU-031691
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_228299
BioSample	SAMEA3708666
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9554
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.48
Jumbo phage	No

Genome content
Genome length	21,943 bps
GC content	35.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	91.66%
Average CDS length	519.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100406_1	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0100406_1	UniRef90	UniRef90_A0A8G0ZHF8	Phage head-tail adapter protein	NA
UHGV-0100406_1	eggNOG-mapper	944562.HMPREF9102_0414	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0100406_1	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0100406_1	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0100406_1	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0100406_2	PHROG	phrog_25	head closure Hc1	connector
UHGV-0100406_2	UniRef90	UniRef90_A0A8G0ZFW5	Phage head closure protein	NA
UHGV-0100406_2	eggNOG-mapper	930946.AEOP01000049_gene159	Phage head-tail joining protein	NA
UHGV-0100406_2	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0100406_2	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0100406_2	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0100406_3	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0100406_3	UniRef90	UniRef90_A0A8G0ZGF6	Phage gp6-like head-tail connector protein	NA
UHGV-0100406_3	eggNOG-mapper	944562.HMPREF9102_0412	Phage gp6-like head-tail connector protein	NA
UHGV-0100406_3	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0100406_3	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0100406_3	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0100406_4	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0100406_4	PHROG	phrog_341	major tail protein	tail
UHGV-0100406_4	UniRef90	UniRef90_UPI001363A04C	Ig-like domain-containing protein	NA
UHGV-0100406_4	eggNOG-mapper	1329250.WOSG25_061400	domain, Protein	NA
UHGV-0100406_4	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0100406_4	COG	COG5492	NA	NA
UHGV-0100406_4	Structural annotation	PF02368, MF_04116, COG5492	NA	NA
UHGV-0100406_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0100406_5	UniRef90	UniRef90_UPI000C078466	phage major capsid protein	NA
UHGV-0100406_5	eggNOG-mapper	947981.E9LUQ3_9CAUD	peptidase activity	NA
UHGV-0100406_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0100406_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0100406_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0100406_6	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0100406_6	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0100406_6	UniRef90	UniRef90_A0A8G0ZJ03	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0100406_6	eggNOG-mapper	947981.E9LUQ2_9CAUD	Clp protease	NA
UHGV-0100406_6	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0100406_6	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0100406_7	PHROG	phrog_12	portal protein	head and packaging
UHGV-0100406_7	UniRef90	UniRef90_A0A8G1E7S5	Phage portal protein	NA
UHGV-0100406_7	eggNOG-mapper	1400520.LFAB_09110	Phage portal protein	NA
UHGV-0100406_7	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0100406_7	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0100406_7	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0100406_7	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0100406_8	PHROG	phrog_1142	NA	unknown function
UHGV-0100406_8	UniRef90	UniRef90_A0A8G1E771	NA	NA
UHGV-0100406_8	eggNOG-mapper	278197.PEPE_1004	NA	NA
UHGV-0100406_8	Pfam	PF06341	NA	DUF1056
UHGV-0100406_8	Structural annotation	PF06341	NA	NA
UHGV-0100406_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0100406_9	UniRef90	UniRef90_A0A8G1E5V1	Terminase large subunit	NA
UHGV-0100406_9	eggNOG-mapper	1423807.BACO01000084_gene2445	Phage Terminase	NA
UHGV-0100406_9	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0100406_9	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0100406_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0100406_9	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0100406_10	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0100406_10	UniRef90	UniRef90_A0A8G1E6T8	Phage terminase small subunit P27 family	NA
UHGV-0100406_10	eggNOG-mapper	1423755.BAML01000004_gene388	Phage terminase, small subunit	NA
UHGV-0100406_10	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0100406_10	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0100406_10	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0100406_10	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0100406_11	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0100406_11	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0100406_11	UniRef90	UniRef90_J0L6E1	Restriction endonuclease	NA
UHGV-0100406_11	eggNOG-mapper	947981.E9LUP7_9CAUD	HNH endonuclease	NA
UHGV-0100406_11	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0100406_11	Structural annotation	PF05766, TIGR02646	NA	NA
UHGV-0100406_15	PHROG	phrog_1558	NA	unknown function
UHGV-0100406_15	UniRef90	UniRef90_A0A0R1HWT7	HTH_11 domain-containing protein	NA
UHGV-0100406_15	eggNOG-mapper	1302286.BAOT01000008_gene595	NA	NA
UHGV-0100406_15	Pfam	PF08279	HTH domain	HTH_11
UHGV-0100406_15	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-0100406_22	PHROG	phrog_7711	NA	unknown function
UHGV-0100406_22	eggNOG-mapper	1226322.HMPREF1545_00031	NA	NA
UHGV-0100406_24	PHROG	phrog_29956	NA	unknown function
UHGV-0100406_24	UniRef90	UniRef90_UPI0013261AAD	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0100406_25	PHROG	phrog_31960	NA	unknown function
UHGV-0100406_27	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0100406_27	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0100406_27	UniRef90	UniRef90_A0A1Y0WQ28	DnaB_2 domain-containing protein	NA
UHGV-0100406_27	eggNOG-mapper	1136177.KCA1_1070	DnaD domain protein	NA
UHGV-0100406_27	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0100406_27	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0100406_27	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0100406_27	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-0100406_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0100406_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0100406_28	UniRef90	UniRef90_UPI000C08D615	single-stranded DNA-binding protein	NA
UHGV-0100406_28	eggNOG-mapper	701521.PECL_9	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0100406_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0100406_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0100406_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0100406_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0100406_28	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0100406_29	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0100406_29	UniRef90	UniRef90_UPI0003F66439	NA	NA
UHGV-0100406_29	eggNOG-mapper	861455.HMPREF9184_01014	NA	NA
UHGV-0100406_29	Structural annotation	COG2250	NA	NA
UHGV-0100406_31	PHROG	phrog_823	NA	unknown function
UHGV-0100406_31	UniRef90	UniRef90_A0A833LDD8	NA	NA
UHGV-0100406_31	eggNOG-mapper	698758.AXY_19200	Protein conserved in bacteria	NA
UHGV-0100406_31	Pfam	PF05595	NA	DUF771
UHGV-0100406_31	COG	COG4707	Prophage pi2 protein 07	NA
UHGV-0100406_31	Structural annotation	PF05595, COG4707	NA	NA
UHGV-0100406_32	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0100406_32	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0100406_32	UniRef90	UniRef90_UPI000DEBE06A	phage antirepressor KilAC domain-containing protein	NA
UHGV-0100406_32	eggNOG-mapper	279281.Q6J1W3_9CAUD	DNA binding	NA
UHGV-0100406_32	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0100406_32	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0100406_32	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0100406_33	UniRef90	UniRef90_A0A5B7SWQ2	Helix-turn-helix transcriptional regulator	NA
UHGV-0100406_33	eggNOG-mapper	469618.FVAG_01279	NA	NA
UHGV-0100406_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100406_33	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0100406_34	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0100406_34	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0100406_34	UniRef90	UniRef90_A0A7T4MYK7	Helix-turn-helix domain-containing protein	NA
UHGV-0100406_34	eggNOG-mapper	1423775.BAMN01000014_gene785	Helix-turn-helix	NA
UHGV-0100406_34	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0100406_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100406_34	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0100406_34	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0100406_34	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0100406_36	PHROG	phrog_4431	NA	unknown function
UHGV-0100406_36	UniRef90	UniRef90_UPI00132F6FAE	SHOCT domain-containing protein	NA
UHGV-0100406_37	PHROG	phrog_2700	NA	unknown function
UHGV-0100406_37	UniRef90	UniRef90_UPI001330AB6A	PH domain-containing protein	NA
UHGV-0100406_37	eggNOG-mapper	445335.CBN_1925	Short C-terminal domain	NA
UHGV-0100406_37	Pfam	PF14470	Bacterial PH domain	bPH_3
UHGV-0100406_37	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0100406_37	Structural annotation	PF14470, NF033891, COG3402	NA	NA
UHGV-0100406_38	PHROG	phrog_2039	NA	unknown function
UHGV-0100406_38	eggNOG-mapper	1423767.BALU01000011_gene280	NA	NA
UHGV-0100406_38	Structural annotation	PF05168, COG1895	NA	NA
UHGV-0100406_39	KOfam	K14059	int; integrase	NA
UHGV-0100406_39	PHROG	phrog_1	integrase	integration and excision
UHGV-0100406_39	UniRef90	UniRef90_A0A1Y0WE56	Integrase	NA
UHGV-0100406_39	eggNOG-mapper	1423807.BACO01000050_gene1472	Belongs to the 'phage' integrase family	NA
UHGV-0100406_39	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0100406_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0100406_39	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0100406_39	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA