UHGV-0100466

Genome information

Genome length 36,533 bps

CDS count 50

Completeness 95.22% (high-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100466
vOTU ID	vOTU-067143
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_229655
BioSample	SAMEA3708593
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.3
Jumbo phage	No

Genome content
Genome length	36,533 bps
GC content	41.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.50%
Average CDS length	664.68 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100466_2	PHROG	phrog_5302	tail protein	tail
UHGV-0100466_2	UniRef90	UniRef90_A0A373XLZ6	NA	NA
UHGV-0100466_2	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0100466_2	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0100466_2	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0100466_3	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0100466_4	PHROG	phrog_1194	NA	unknown function
UHGV-0100466_4	UniRef90	UniRef90_A0A8D9PDT1	YolD-like protein	NA
UHGV-0100466_4	eggNOG-mapper	1304866.K413DRAFT_3047	NA	NA
UHGV-0100466_4	Pfam	PF20458	NA	DUF6711
UHGV-0100466_4	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0100466_5	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0100466_5	UniRef90	UniRef90_A0A2N0UYY1	Phage-related protein	NA
UHGV-0100466_5	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0100466_5	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0100466_5	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0100466_6	PHROG	phrog_8355	NA	unknown function
UHGV-0100466_6	UniRef90	UniRef90_UPI001C0B4BD8	Gp15 family bacteriophage protein	NA
UHGV-0100466_6	eggNOG-mapper	1262449.CP6013_3207	NA	NA
UHGV-0100466_7	PHROG	phrog_8300	NA	unknown function
UHGV-0100466_7	eggNOG-mapper	483218.BACPEC_01148	NA	NA
UHGV-0100466_7	Structural annotation	PF06854	NA	NA
UHGV-0100466_8	PHROG	phrog_820	major tail protein	tail
UHGV-0100466_8	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0100466_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0100466_9	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0100466_9	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0100466_9	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-0100466_9	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0100466_9	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0100466_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0100466_10	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0100466_11	PHROG	phrog_8710	NA	unknown function
UHGV-0100466_11	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0100466_11	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0100466_12	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-0100466_13	PHROG	phrog_1378	NA	unknown function
UHGV-0100466_13	eggNOG-mapper	552396.HMPREF0863_01636	NA	NA
UHGV-0100466_14	PHROG	phrog_422	major head protein	head and packaging
UHGV-0100466_14	UniRef90	UniRef90_A0A373XYP8	Capsid protein	NA
UHGV-0100466_14	eggNOG-mapper	552396.HMPREF0863_01635	NA	NA
UHGV-0100466_14	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0100466_15	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0100466_15	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0100466_16	PHROG	phrog_2616	NA	unknown function
UHGV-0100466_16	Structural annotation	PF01281	NA	NA
UHGV-0100466_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0100466_18	UniRef90	UniRef90_A0A2N0UXT6	Phage minor capsid protein 2	NA
UHGV-0100466_18	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0100466_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0100466_18	COG	COG2369	NA	NA
UHGV-0100466_18	Structural annotation	PF06152	NA	NA
UHGV-0100466_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0100466_19	UniRef90	UniRef90_A0A3D0XB31	Capsid protein	NA
UHGV-0100466_19	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0100466_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0100466_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0100466_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0100466_20	UniRef90	UniRef90_A0A374N1S8	Terminase	NA
UHGV-0100466_20	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0100466_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0100466_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0100466_20	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0100466_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0100466_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0100466_21	UniRef90	UniRef90_A0A2N0UXP4	Terminase small subunit	NA
UHGV-0100466_21	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0100466_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0100466_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0100466_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0100466_22	Structural annotation	TIGR01636	NA	NA
UHGV-0100466_23	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0100466_23	UniRef90	UniRef90_A0A2N0ULX9	Methyltransf_11 domain-containing protein	NA
UHGV-0100466_23	eggNOG-mapper	1284352.AOIG01000022_gene3791	methyltransferase	NA
UHGV-0100466_23	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0100466_23	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0100466_23	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0100466_23	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0100466_27	Structural annotation	PF02559, MF_00667, TIGR02861	NA	NA
UHGV-0100466_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0100466_28	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0100466_28	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-0100466_28	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0100466_28	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0100466_28	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0100466_28	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0100466_29	PHROG	phrog_16687	NA	unknown function
UHGV-0100466_29	eggNOG-mapper	1123511.KB905868_gene197	NA	NA
UHGV-0100466_30	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0100466_30	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0100466_30	UniRef90	UniRef90_A0A2N0UXP7	Regulatory protein RepA	NA
UHGV-0100466_30	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0100466_30	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0100466_30	Pfam	PF13481	AAA domain	AAA_25
UHGV-0100466_30	COG	COG3598	RecA-family ATPase	NA
UHGV-0100466_30	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0100466_31	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0100466_31	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0100466_31	UniRef90	UniRef90_A0A412ULZ3	ATP-dependent helicase	NA
UHGV-0100466_31	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0100466_31	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0100466_31	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0100466_31	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0100466_31	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0100466_31	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0100466_32	PHROG	phrog_2698	NA	unknown function
UHGV-0100466_32	UniRef90	UniRef90_UPI000F54335B	NA	NA
UHGV-0100466_32	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-0100466_32	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0100466_33	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0100466_33	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-0100466_33	eggNOG-mapper	1123304.AQYA01000037_gene196	AAA domain	NA
UHGV-0100466_33	Pfam	PF13479	AAA domain	AAA_24
UHGV-0100466_33	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0100466_35	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0100466_35	PHROG	phrog_1499	NA	unknown function
UHGV-0100466_35	UniRef90	UniRef90_A0A2N0UXU2	Chromosome segregation protein	NA
UHGV-0100466_35	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0100466_35	Pfam	PF13476	AAA domain	AAA_23
UHGV-0100466_35	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0100466_35	Structural annotation	TIGR03185, COG5293	NA	NA
UHGV-0100466_37	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0100466_37	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0100466_39	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0100466_39	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0100466_39	UniRef90	UniRef90_A0A374N3U7	XRE family transcriptional regulator	NA
UHGV-0100466_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100466_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0100466_39	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0100466_40	PHROG	phrog_3773	NA	unknown function
UHGV-0100466_40	Structural annotation	PF01423, MF_00257, NF041667	NA	NA
UHGV-0100466_42	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-0100466_42	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0100466_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0100466_42	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0100466_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0100466_43	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0100466_43	eggNOG-mapper	411463.EUBVEN_00115	Helix-turn-helix domain	NA
UHGV-0100466_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100466_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0100466_43	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0100466_44	PHROG	phrog_1914	NA	unknown function
UHGV-0100466_44	UniRef90	UniRef90_A0A373XNL4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0100466_44	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0100466_44	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0100466_44	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0100466_44	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0100466_45	PHROG	phrog_10226	NA	unknown function
UHGV-0100466_45	eggNOG-mapper	431943.CKL_3226	NA	NA
UHGV-0100466_45	Structural annotation	COG4127	NA	NA
UHGV-0100466_47	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0100466_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0100466_47	UniRef90	UniRef90_A0A374NFM5	XRE family transcriptional regulator	NA
UHGV-0100466_47	eggNOG-mapper	1567011.A0A0A7RUJ5_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0100466_47	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0100466_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100466_47	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0100466_48	KOfam	K14059	int; integrase	NA
UHGV-0100466_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0100466_48	UniRef90	UniRef90_A0A412L7T7	Site-specific integrase	NA
UHGV-0100466_48	eggNOG-mapper	1540257.JQMW01000011_gene2033	Phage integrase family	NA
UHGV-0100466_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0100466_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0100466_48	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0100466_50	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0100466_50	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-0100466_50	UniRef90	UniRef90_UPI0015F455B4	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0100466_50	eggNOG-mapper	411474.COPEUT_02341	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	NA
UHGV-0100466_50	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0100466_50	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-0100466_50	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0100466_50	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0100466_50	Structural annotation	PF07638, MF_00245, TIGR02954, COG1595	NA	NA