UHGV-0100470

Genome information

Genome length 39,471 bps

CDS count 70

Completeness 96.06% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100470
vOTU ID	vOTU-009339
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_229643
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.06% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50
Jumbo phage	No

Genome content
Genome length	39,471 bps
GC content	51.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	93.58%
Average CDS length	532.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100470_1	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0100470_1	UniRef90	UniRef90_A0A7S9CWT7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0100470_1	eggNOG-mapper	1215092.PA6_009_00470	Endodeoxyribonuclease RusA	NA
UHGV-0100470_1	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0100470_1	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0100470_2	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0100470_2	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0100470_2	UniRef90	UniRef90_UPI001C118A83	single-stranded DNA-binding protein	NA
UHGV-0100470_2	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0100470_2	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0100470_2	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0100470_2	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0100470_2	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0100470_2	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0100470_3	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0100470_3	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0100470_3	UniRef90	UniRef90_UPI0018C50A8E	recombinase RecT	NA
UHGV-0100470_3	eggNOG-mapper	40521.Q9T172_BPA18	DNA metabolic process	NA
UHGV-0100470_3	Pfam	PF03837	RecT family	RecT
UHGV-0100470_3	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0100470_3	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0100470_4	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0100470_4	eggNOG-mapper	397290.C810_01484	NA	NA
UHGV-0100470_5	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0100470_5	UniRef90	UniRef90_UPI001D078B74	YqaJ viral recombinase family protein	NA
UHGV-0100470_5	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0100470_5	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0100470_5	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0100470_5	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0100470_5	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0100470_10	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0100470_11	Structural annotation	PF20432, NF041951, COG3655	NA	NA
UHGV-0100470_12	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0100470_12	UniRef90	UniRef90_A0A3E3DUL7	NA	NA
UHGV-0100470_12	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0100470_12	Structural annotation	COG2250	NA	NA
UHGV-0100470_13	UniRef90	UniRef90_UPI001655B004	carboxypeptidase	NA
UHGV-0100470_13	eggNOG-mapper	626523.GCWU000342_01045	NA	NA
UHGV-0100470_14	UniRef90	UniRef90_UPI001D0E690A	helix-turn-helix domain-containing protein	NA
UHGV-0100470_14	eggNOG-mapper	1321782.HMPREF1986_00318	NA	NA
UHGV-0100470_14	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0100470_15	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0100470_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0100470_15	UniRef90	UniRef90_K1TCM8	Protein containing Helix-turn-helix type 3 domain protein	NA
UHGV-0100470_15	eggNOG-mapper	1408813.AYMG01000038_gene269	Helix-turn-helix domain	NA
UHGV-0100470_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100470_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0100470_15	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0100470_16	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-0100470_16	UniRef90	UniRef90_UPI001C10185D	phage minor capsid protein	NA
UHGV-0100470_16	eggNOG-mapper	679192.HMPREF9013_1325	NA	NA
UHGV-0100470_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0100470_17	COG	COG1426	NA	NA
UHGV-0100470_17	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0100470_18	KOfam	K14059	int; integrase	NA
UHGV-0100470_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0100470_18	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-0100470_18	eggNOG-mapper	742738.HMPREF9460_01344	Phage integrase family	NA
UHGV-0100470_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0100470_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0100470_18	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0100470_22	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-0100470_23	PHROG	phrog_10091	holin	lysis
UHGV-0100470_23	UniRef90	UniRef90_D7GNX3	Holin, phage phi LC3 family	NA
UHGV-0100470_23	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0100470_23	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0100470_23	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0100470_23	COG	COG5546	NA	NA
UHGV-0100470_23	Structural annotation	COG5546	NA	NA
UHGV-0100470_24	PHROG	phrog_4105	NA	unknown function
UHGV-0100470_24	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0100470_24	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0100470_25	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0100470_25	PHROG	phrog_894	endolysin	lysis
UHGV-0100470_25	UniRef90	UniRef90_R5EEQ7	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0100470_25	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0100470_25	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0100470_25	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0100470_25	COG	COG3108	NA	NA
UHGV-0100470_25	Structural annotation	PF05951, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0100470_26	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-0100470_29	Structural annotation	PF14686, PF21253, NF040788, COG2512	NA	NA
UHGV-0100470_30	PHROG	phrog_30133	virion structural protein	head and packaging
UHGV-0100470_30	eggNOG-mapper	1123263.AUKY01000051_gene1069	cellulase activity	NA
UHGV-0100470_30	COG	COG4926	Phage-related protein	NA
UHGV-0100470_33	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0100470_33	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0100470_34	PHROG	phrog_6616	tail protein	tail
UHGV-0100470_34	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0100470_34	Structural annotation	PF16466, TIGR01603, COG3500	NA	NA
UHGV-0100470_35	PHROG	phrog_1194	NA	unknown function
UHGV-0100470_35	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0100470_35	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0100470_36	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0100470_36	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0100470_36	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0100470_36	COG	COG1511	NA	NA
UHGV-0100470_36	Structural annotation	PF16789, TIGR02473, COG2882	NA	NA
UHGV-0100470_37	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-0100470_37	PHROG	phrog_10292	NA	unknown function
UHGV-0100470_37	UniRef90	UniRef90_UPI00195BC594	TM2 domain-containing protein	NA
UHGV-0100470_37	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-0100470_37	Pfam	PF05154	TM2 domain	TM2
UHGV-0100470_37	COG	COG2314	NA	NA
UHGV-0100470_38	PHROG	phrog_706	NA	unknown function
UHGV-0100470_38	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0100470_38	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0100470_38	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0100470_38	Structural annotation	PF06854	NA	NA
UHGV-0100470_39	PHROG	phrog_11299	NA	unknown function
UHGV-0100470_39	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0100470_39	Structural annotation	PF10666	NA	NA
UHGV-0100470_40	PHROG	phrog_3099	NA	unknown function
UHGV-0100470_40	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0100470_40	Structural annotation	TIGR02126	NA	NA
UHGV-0100470_41	PHROG	phrog_3266	tail completion	connector
UHGV-0100470_41	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0100470_41	Structural annotation	PF08873	NA	NA
UHGV-0100470_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0100470_42	UniRef90	UniRef90_UPI0006805998	minor capsid protein	NA
UHGV-0100470_42	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0100470_42	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0100470_42	Structural annotation	PF11114	NA	NA
UHGV-0100470_43	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-0100470_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0100470_44	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0100470_45	PHROG	phrog_212	major head protein	head and packaging
UHGV-0100470_45	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-0100470_45	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0100470_45	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0100470_46	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0100470_46	UniRef90	UniRef90_A0A8J6J919	Phage scaffolding protein	NA
UHGV-0100470_46	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0100470_46	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0100470_46	Structural annotation	PF06810	NA	NA
UHGV-0100470_48	UniRef90	UniRef90_R6AQU3	Conserved protein	NA
UHGV-0100470_48	eggNOG-mapper	1123489.AUAN01000010_gene361	NA	NA
UHGV-0100470_48	Structural annotation	PF20111	NA	NA
UHGV-0100470_49	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0100470_49	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0100470_49	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0100470_49	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0100470_49	COG	COG2369	NA	NA
UHGV-0100470_49	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0100470_50	PHROG	phrog_533	portal protein	head and packaging
UHGV-0100470_50	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-0100470_50	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0100470_50	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0100470_50	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0100470_52	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0100470_52	PHROG	phrog_10250	NA	unknown function
UHGV-0100470_52	UniRef90	UniRef90_UPI0018A99FCF	PBSX family phage terminase large subunit	NA
UHGV-0100470_52	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0100470_52	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0100470_52	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0100470_52	COG	COG1783	Phage terminase large subunit	NA
UHGV-0100470_52	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0100470_53	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-0100470_53	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0100470_53	Structural annotation	PF13542	NA	NA
UHGV-0100470_54	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0100470_54	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0100470_54	eggNOG-mapper	1347392.CCEZ01000015_gene2854	NA	NA
UHGV-0100470_54	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0100470_56	Structural annotation	PF10013, NF001638, COG4338	NA	NA
UHGV-0100470_58	PHROG	phrog_924	NA	unknown function
UHGV-0100470_58	UniRef90	UniRef90_A0A2E3KS66	NA	NA
UHGV-0100470_58	Pfam	PF04448	NA	DUF551
UHGV-0100470_58	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0100470_61	PHROG	phrog_3136	NA	unknown function
UHGV-0100470_61	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0100470_61	eggNOG-mapper	693746.OBV_25380	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0100470_61	Pfam	PF04266	ASCH domain	ASCH
UHGV-0100470_61	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0100470_61	Structural annotation	PF04266, MF_00684, NF003443, COG4933	NA	NA
UHGV-0100470_62	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0100470_62	UniRef90	UniRef90_R6QWY1	28	NA
UHGV-0100470_62	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0100470_62	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0100470_63	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0100470_63	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0100470_63	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0100470_63	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0100470_63	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0100470_63	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0100470_63	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0100470_63	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0100470_65	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0100470_65	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0100470_65	UniRef90	UniRef90_UPI00164AFBC1	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0100470_65	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0100470_65	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0100470_65	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0100470_65	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0100470_65	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0100470_67	PHROG	phrog_9804	NA	unknown function
UHGV-0100470_67	UniRef90	UniRef90_A0A3D1LDS2	Inhibitor_G39P domain-containing protein	NA
UHGV-0100470_67	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0100470_67	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0100470_67	Structural annotation	PF11417	NA	NA
UHGV-0100470_68	PHROG	phrog_16304	NA	unknown function
UHGV-0100470_68	UniRef90	UniRef90_UPI001959E913	NA	NA
UHGV-0100470_68	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0100470_68	Pfam	PF19808	NA	DUF6291
UHGV-0100470_68	Structural annotation	PF19808	NA	NA
UHGV-0100470_69	PHROG	phrog_4973	NA	unknown function
UHGV-0100470_69	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0100470_69	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0100470_69	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0100470_69	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-0100470_70	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0100470_70	UniRef90	UniRef90_A0A354YUJ1	RusA family crossover junction endodeoxyribonuclease (Fragment)	NA
UHGV-0100470_70	eggNOG-mapper	742722.HMPREF9463_00198	Endodeoxyribonuclease RusA	NA
UHGV-0100470_70	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0100470_70	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA