UHGV-0100637

Genome information

Genome length 34,577 bps

CDS count 55

Completeness 98.72% (high-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100637
vOTU ID	vOTU-068146
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_203975
BioSample	SAMEA3449203
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.72% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.77
Jumbo phage	No

Genome content
Genome length	34,577 bps
GC content	51.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	95.12%
Average CDS length	604.91 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100637_2	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0100637_2	UniRef90	UniRef90_A0A414B846	HNH endonuclease	NA
UHGV-0100637_2	eggNOG-mapper	33035.JPJF01000113_gene2099	HNH nucleases	NA
UHGV-0100637_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0100637_4	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0100637_10	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0100637_10	UniRef90	UniRef90_A0A4R2KAL0	MazG-like nucleotide pyrophosphohydrolase family protein	NA
UHGV-0100637_10	eggNOG-mapper	936375.HMPREF1152_1061	NA	NA
UHGV-0100637_10	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0100637_12	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0100637_12	UniRef90	UniRef90_C7H6F1	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0100637_12	eggNOG-mapper	411483.FAEPRAA2165_01884	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0100637_12	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0100637_12	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0100637_12	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0100637_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0100637_14	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0100637_14	UniRef90	UniRef90_A0A1I0V589	Holliday junction resolvase RusA (Prophage-encoded endonuclease)	NA
UHGV-0100637_14	eggNOG-mapper	665950.HMPREF1025_02637	Endodeoxyribonuclease RusA	NA
UHGV-0100637_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0100637_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0100637_14	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0100637_16	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0100637_16	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0100637_16	UniRef90	UniRef90_A0A3A8YG22	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0100637_16	eggNOG-mapper	272563.CD630_09270	C-5 cytosine-specific DNA methylase	NA
UHGV-0100637_16	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0100637_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0100637_16	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0100637_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0100637_16	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0100637_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0100637_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0100637_18	UniRef90	UniRef90_R6DSN6	Replicative DNA helicase	NA
UHGV-0100637_18	eggNOG-mapper	1280694.AUJQ01000001_gene1885	NA	NA
UHGV-0100637_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0100637_18	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0100637_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0100637_18	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0100637_19	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0100637_19	UniRef90	UniRef90_UPI00164BB1D1	transcriptional regulator	NA
UHGV-0100637_19	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0100637_19	Structural annotation	PF01978, MF_01819, NF041413, COG0735	NA	NA
UHGV-0100637_20	PHROG	phrog_2113	NA	unknown function
UHGV-0100637_20	Structural annotation	PF21715, MF_01804, COG1654	NA	NA
UHGV-0100637_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0100637_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0100637_21	UniRef90	UniRef90_A0A1I3BIT1	Single-stranded DNA-binding protein	NA
UHGV-0100637_21	eggNOG-mapper	397288.C806_03901	Single-strand binding protein family	NA
UHGV-0100637_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0100637_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0100637_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0100637_22	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0100637_22	UniRef90	UniRef90_UPI001D08E6D4	phage recombination protein Bet	NA
UHGV-0100637_22	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0100637_22	Pfam	PF03837	RecT family	RecT
UHGV-0100637_22	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0100637_22	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0100637_22	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0100637_23	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0100637_23	UniRef90	UniRef90_UPI000D3EBEC8	siphovirus Gp157 family protein	NA
UHGV-0100637_23	eggNOG-mapper	1296659.S5M9S4_9CAUD	Siphovirus Gp157	NA
UHGV-0100637_23	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0100637_23	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0100637_26	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0100637_26	PHROG	phrog_31265	NA	unknown function
UHGV-0100637_26	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0100637_26	Structural annotation	PF13599, NF011744, COG1357	NA	NA
UHGV-0100637_30	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0100637_30	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0100637_30	UniRef90	UniRef90_R5AEY7	Helix-turn-helix protein	NA
UHGV-0100637_30	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0100637_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100637_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0100637_30	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0100637_35	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0100637_35	PHROG	phrog_9589	endolysin	lysis
UHGV-0100637_35	UniRef90	UniRef90_UPI000B195CAC	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0100637_35	eggNOG-mapper	552398.HMPREF0866_03091	CHAP domain	NA
UHGV-0100637_35	Pfam	PF01476	LysM domain	LysM
UHGV-0100637_35	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0100637_35	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0100637_35	Structural annotation	PF00877, TIGR02594, COG3942	NA	NA
UHGV-0100637_36	PHROG	phrog_881	holin	lysis
UHGV-0100637_36	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-0100637_36	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0100637_36	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0100637_36	Structural annotation	PF16938	NA	NA
UHGV-0100637_37	PHROG	phrog_4105	NA	unknown function
UHGV-0100637_37	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0100637_38	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-0100637_38	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0100637_39	UniRef90	UniRef90_A0A174NC72	BppU_N domain-containing protein	NA
UHGV-0100637_39	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0100637_40	PHROG	phrog_372	tail protein	tail
UHGV-0100637_40	UniRef90	UniRef90_UPI001D0897E0	NA	NA
UHGV-0100637_40	eggNOG-mapper	1235799.C818_01005	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0100637_40	Pfam	PF05895	NA	DUF859
UHGV-0100637_40	COG	COG4675	Phage tail collar domain	NA
UHGV-0100637_41	KOfam	K13582	podJ; localization factor PodJL	NA
UHGV-0100637_41	PHROG	phrog_13289	tail protein	tail
UHGV-0100637_41	UniRef90	UniRef90_A0A350V7A9	Prophage_tail domain-containing protein	NA
UHGV-0100637_41	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0100637_41	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0100637_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0100637_41	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0100637_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0100637_41	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0100637_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0100637_42	UniRef90	UniRef90_A0A3R6C171	Phage tail protein	NA
UHGV-0100637_42	eggNOG-mapper	1232446.BAIE02000002_gene835	phage tail	NA
UHGV-0100637_42	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0100637_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0100637_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0100637_43	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0100637_43	eggNOG-mapper	1232446.BAIE02000002_gene834	tape measure	NA
UHGV-0100637_43	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0100637_43	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0100637_44	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0100637_44	Structural annotation	PF11836	NA	NA
UHGV-0100637_45	PHROG	phrog_88	major tail protein	tail
UHGV-0100637_45	UniRef90	UniRef90_A0A1Y4R540	S-l_SbsC_C domain-containing protein	NA
UHGV-0100637_45	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0100637_45	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0100637_45	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-0100637_46	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0100637_46	UniRef90	UniRef90_R6FMT8	HK97 gp10 family phage protein	NA
UHGV-0100637_46	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0100637_46	Structural annotation	TIGR01725	NA	NA
UHGV-0100637_47	PHROG	phrog_78	tail terminator	connector
UHGV-0100637_47	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0100637_47	Structural annotation	PF05657	NA	NA
UHGV-0100637_48	PHROG	phrog_19734	NA	unknown function
UHGV-0100637_48	UniRef90	UniRef90_A0A414B852	Head-tail adaptor protein	NA
UHGV-0100637_48	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0100637_48	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0100637_49	PHROG	phrog_2550	NA	unknown function
UHGV-0100637_49	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0100637_49	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-0100637_49	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0100637_50	PHROG	phrog_21765	NA	unknown function
UHGV-0100637_50	UniRef90	UniRef90_UPI0018A8F63F	collagen-like protein	NA
UHGV-0100637_50	eggNOG-mapper	1203606.HMPREF1526_01905	Collagen triple helix repeat (20 copies)	NA
UHGV-0100637_50	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0100637_50	Structural annotation	PF18313	NA	NA
UHGV-0100637_51	PHROG	phrog_10	major head protein	head and packaging
UHGV-0100637_51	UniRef90	UniRef90_A0A1C6CI17	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0100637_51	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0100637_51	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0100637_51	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0100637_51	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0100637_51	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0100637_51	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0100637_52	KOfam	K06904	NA	NA
UHGV-0100637_52	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0100637_52	UniRef90	UniRef90_UPI0008716C68	HK97 family phage prohead protease	NA
UHGV-0100637_52	eggNOG-mapper	1232453.BAIF02000028_gene2722	Phage prohead protease, HK97 family	NA
UHGV-0100637_52	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0100637_52	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0100637_52	COG	COG3740	Phage head maturation protease	NA
UHGV-0100637_52	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0100637_53	PHROG	phrog_12	portal protein	head and packaging
UHGV-0100637_53	UniRef90	UniRef90_A0A1Y4R7B9	Phage portal protein	NA
UHGV-0100637_53	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0100637_53	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0100637_53	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0100637_53	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0100637_53	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0100637_54	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0100637_54	UniRef90	UniRef90_A0A1Y4R6J8	Terminase	NA
UHGV-0100637_54	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0100637_54	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0100637_54	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0100637_54	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0100637_54	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0100637_55	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0100637_55	UniRef90	UniRef90_UPI0007C801FA	P27 family phage terminase small subunit	NA
UHGV-0100637_55	eggNOG-mapper	1497679.EP56_05710	Phage terminase, small subunit	NA
UHGV-0100637_55	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0100637_55	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0100637_55	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA