UHGV-0100662

Genome information

Genome length 30,520 bps

CDS count 45

Completeness 68.00% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100662
vOTU ID	vOTU-015859
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_225337
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.4
Jumbo phage	No

Genome content
Genome length	30,520 bps
GC content	58.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	95.76%
Average CDS length	654.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100662_2	PHROG	phrog_3777	NA	unknown function
UHGV-0100662_2	UniRef90	UniRef90_UPI0019572B07	NA	NA
UHGV-0100662_2	eggNOG-mapper	767817.Desgi_3545	NA	NA
UHGV-0100662_2	Pfam	PF12957	NA	DUF3846
UHGV-0100662_2	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0100662_7	UniRef90	UniRef90_UPI00164C2CD3	zinc finger domain-containing protein	NA
UHGV-0100662_8	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0100662_9	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0100662_9	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0100662_9	UniRef90	UniRef90_A0A810QEK7	Methyltransferase	NA
UHGV-0100662_9	eggNOG-mapper	1166948.JPZL01000002_gene1802	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0100662_9	PADLOC	MTase_II_00173	Type II methyltransferase	RM
UHGV-0100662_9	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0100662_9	COG	COG0863	DNA modification methylase	NA
UHGV-0100662_9	Structural annotation	PF01555, NF008572, COG0863	NA	NA
UHGV-0100662_11	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0100662_11	eggNOG-mapper	641107.CDLVIII_1314	NA	NA
UHGV-0100662_11	Structural annotation	PF21578	NA	NA
UHGV-0100662_12	PHROG	phrog_5781	NA	unknown function
UHGV-0100662_12	UniRef90	UniRef90_A0A810Q4L2	NA	NA
UHGV-0100662_12	eggNOG-mapper	1005994.GTGU_01487	NA	NA
UHGV-0100662_12	Pfam	PF14359	NA	DUF4406
UHGV-0100662_12	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0100662_12	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0100662_13	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0100662_13	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0100662_13	UniRef90	UniRef90_A0A810Q3U8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0100662_13	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0100662_13	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0100662_13	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0100662_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0100662_13	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0100662_15	PHROG	phrog_2045	NA	unknown function
UHGV-0100662_15	UniRef90	UniRef90_A0A4D7ANN9	Phage Gp37/Gp68 family protein	NA
UHGV-0100662_15	eggNOG-mapper	1235790.C805_00077	NA	NA
UHGV-0100662_15	Pfam	PF07505	NA	DUF5131
UHGV-0100662_15	COG	COG4422	NA	NA
UHGV-0100662_15	Structural annotation	PF07505, TIGR04471, COG4422	NA	NA
UHGV-0100662_17	PHROG	phrog_3136	NA	unknown function
UHGV-0100662_17	UniRef90	UniRef90_UPI001A9A8D4F	ASCH domain-containing protein	NA
UHGV-0100662_17	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0100662_17	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0100662_17	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0100662_19	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0100662_19	UniRef90	UniRef90_UPI00164D9A1A	NA	NA
UHGV-0100662_19	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0100662_19	Pfam	PF06356	NA	DUF1064
UHGV-0100662_19	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0100662_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0100662_20	UniRef90	UniRef90_A0A1M7LTP3	Sigma-70, region 4	NA
UHGV-0100662_20	eggNOG-mapper	411470.RUMGNA_00221	NA	NA
UHGV-0100662_20	Pfam	PF07374	NA	DUF1492
UHGV-0100662_20	Structural annotation	PF07374, MF_00245, TIGR02984, COG2739	NA	NA
UHGV-0100662_21	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0100662_21	eggNOG-mapper	478749.BRYFOR_07532	NA	NA
UHGV-0100662_21	Structural annotation	PF07471, NF033787, COG4220	NA	NA
UHGV-0100662_22	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0100662_22	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0100662_22	UniRef90	UniRef90_A0A810Q3U0	Terminase	NA
UHGV-0100662_22	eggNOG-mapper	887325.HMPREF0381_0382	Phage terminase large subunit (GpA)	NA
UHGV-0100662_22	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0100662_22	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0100662_22	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0100662_22	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0100662_23	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0100662_23	UniRef90	UniRef90_A0A4D7AUI1	Peptidylprolyl isomerase	NA
UHGV-0100662_23	eggNOG-mapper	1235835.C814_01179	NA	NA
UHGV-0100662_23	Structural annotation	PF19645	NA	NA
UHGV-0100662_24	PHROG	phrog_21	portal protein	head and packaging
UHGV-0100662_24	UniRef90	UniRef90_A0A810Q9Q9	Phage portal protein	NA
UHGV-0100662_24	eggNOG-mapper	1211817.CCAT010000013_gene3186	Phage portal protein, lambda family	NA
UHGV-0100662_24	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0100662_24	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0100662_24	COG	COG5511	Phage capsid protein	NA
UHGV-0100662_24	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0100662_25	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0100662_25	UniRef90	UniRef90_A0A810QB92	Caudovirus prohead protease	NA
UHGV-0100662_25	eggNOG-mapper	1235835.C814_01181	Phage prohead protease, HK97 family	NA
UHGV-0100662_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0100662_25	COG	COG3740	Phage head maturation protease	NA
UHGV-0100662_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0100662_26	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0100662_26	UniRef90	UniRef90_A0A4S2AAE7	Mu-like_gpT domain-containing protein	NA
UHGV-0100662_26	eggNOG-mapper	478749.BRYFOR_07537	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	NA
UHGV-0100662_26	COG	COG3087	Cell division protein FtsN	NA
UHGV-0100662_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0100662_27	PHROG	phrog_122	head decoration	head and packaging
UHGV-0100662_27	UniRef90	UniRef90_A0A2V2GI86	DNA breaking-rejoining protein	NA
UHGV-0100662_27	eggNOG-mapper	1415774.U728_501	NA	NA
UHGV-0100662_27	Pfam	PF09956	NA	DUF2190
UHGV-0100662_27	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0100662_27	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0100662_29	PHROG	phrog_2551	minor tail protein	tail
UHGV-0100662_29	eggNOG-mapper	478749.BRYFOR_07540	ATP-binding sugar transporter from pro-phage	NA
UHGV-0100662_29	Structural annotation	PF13856	NA	NA
UHGV-0100662_30	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0100662_30	UniRef90	UniRef90_UPI0006C04764	phage tail protein	NA
UHGV-0100662_30	eggNOG-mapper	478749.BRYFOR_07541	NA	NA
UHGV-0100662_30	Structural annotation	PF06763	NA	NA
UHGV-0100662_31	PHROG	phrog_28892	NA	unknown function
UHGV-0100662_31	UniRef90	UniRef90_B1V2Q3	Putative lipoprotein	NA
UHGV-0100662_31	eggNOG-mapper	290402.Cbei_1651	NA	NA
UHGV-0100662_32	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0100662_32	eggNOG-mapper	97139.C824_00706	NA	NA
UHGV-0100662_32	Structural annotation	PF08873	NA	NA
UHGV-0100662_33	PHROG	phrog_4089	NA	unknown function
UHGV-0100662_33	eggNOG-mapper	887325.HMPREF0381_0392	NA	NA
UHGV-0100662_34	KOfam	K06907	NA	NA
UHGV-0100662_34	PHROG	phrog_23	tail sheath	tail
UHGV-0100662_34	UniRef90	UniRef90_A0A2V2GH08	Phage tail protein	NA
UHGV-0100662_34	eggNOG-mapper	887325.HMPREF0381_0393	COG3497 Phage tail sheath protein FI	NA
UHGV-0100662_34	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0100662_34	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0100662_35	KOfam	K06908	NA	NA
UHGV-0100662_35	PHROG	phrog_55	head closure	connector
UHGV-0100662_35	UniRef90	UniRef90_A0A2V2GD83	Phage tail protein	NA
UHGV-0100662_35	eggNOG-mapper	693746.OBV_22810	Phage tail tube protein FII	NA
UHGV-0100662_35	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0100662_35	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0100662_35	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0100662_36	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0100662_36	UniRef90	UniRef90_UPI00195DB5F0	phage tail assembly protein	NA
UHGV-0100662_36	eggNOG-mapper	1235835.C814_01190	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0100662_36	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0100662_36	Structural annotation	PF10109	NA	NA
UHGV-0100662_37	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0100662_37	UniRef90	UniRef90_A0A367FY65	Phage tail tape measure protein	NA
UHGV-0100662_37	eggNOG-mapper	1235793.C809_02672	Phage-related minor tail protein	NA
UHGV-0100662_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0100662_37	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0100662_37	COG	COG5283	Phage-related tail protein	NA
UHGV-0100662_37	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0100662_38	PHROG	phrog_46	tail protein	tail
UHGV-0100662_38	UniRef90	UniRef90_A0A2V2GI76	Phage tail protein	NA
UHGV-0100662_38	eggNOG-mapper	411470.RUMGNA_00241	Phage Tail Protein X	NA
UHGV-0100662_38	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0100662_38	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0100662_39	KOfam	K06905	NA	NA
UHGV-0100662_39	PHROG	phrog_52	tail protein	tail
UHGV-0100662_39	UniRef90	UniRef90_G4KPI8	Late control D family protein	NA
UHGV-0100662_39	eggNOG-mapper	693746.OBV_22780	COG3500 Phage protein D	NA
UHGV-0100662_39	COG	COG3500	NA	NA
UHGV-0100662_39	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0100662_40	UniRef90	UniRef90_UPI001D0EA0B7	phage baseplate protein	NA
UHGV-0100662_40	eggNOG-mapper	693746.OBV_22770	Baseplate assembly protein	NA
UHGV-0100662_40	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0100662_40	Structural annotation	PF01176, MF_00216, TIGR01644, COG4540	NA	NA
UHGV-0100662_41	PHROG	phrog_76	tail protein	tail
UHGV-0100662_41	UniRef90	UniRef90_UPI0004630165	phage tail protein	NA
UHGV-0100662_41	eggNOG-mapper	478749.BRYFOR_07551	Phage P2 GpU	NA
UHGV-0100662_41	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0100662_41	COG	COG3499	NA	NA
UHGV-0100662_41	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0100662_42	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0100662_42	UniRef90	UniRef90_A0A0X1U7T5	Protein 25-like lysozyme	NA
UHGV-0100662_42	eggNOG-mapper	693746.OBV_22750	GPW Gp25 family protein	NA
UHGV-0100662_42	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0100662_42	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0100662_43	PHROG	phrog_6	baseplate protein	tail
UHGV-0100662_43	UniRef90	UniRef90_A0A2V2GFF7	Phage tail protein	NA
UHGV-0100662_43	eggNOG-mapper	411470.RUMGNA_00246	NA	NA
UHGV-0100662_43	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0100662_43	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0100662_43	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0100662_44	PHROG	phrog_14404	baseplate protein	tail
UHGV-0100662_44	UniRef90	UniRef90_A0A2V2GDM7	Phage tail protein I	NA
UHGV-0100662_44	eggNOG-mapper	1501230.ET33_26360	Phage tail protein (Tail_P2_I)	NA
UHGV-0100662_44	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0100662_44	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0100662_44	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0100662_44	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0100662_45	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0100662_45	eggNOG-mapper	693746.OBV_22720	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0100662_45	COG	COG3827	Cell pole-organizing protein PopZ	NA