UHGV-0100722

Genome information

Genome length 48,947 bps

CDS count 72

Completeness 78.25% (medium-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100722
vOTU ID	vOTU-037096
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_228406
BioSample	SAMEA3708563
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.99
Jumbo phage	No

Genome content
Genome length	48,947 bps
GC content	39.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	91.02%
Average CDS length	621.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100722_1	PHROG	phrog_19572	NA	unknown function
UHGV-0100722_1	UniRef90	UniRef90_UPI001E335545	NA	NA
UHGV-0100722_1	eggNOG-mapper	411901.BACCAC_01211	NA	NA
UHGV-0100722_1	Pfam	PF14902	NA	DUF4494
UHGV-0100722_3	eggNOG-mapper	1121101.HMPREF1532_02570	NA	NA
UHGV-0100722_4	PHROG	phrog_824	NA	unknown function
UHGV-0100722_4	UniRef90	UniRef90_A0A1Q6HQK2	VRR-NUC domain-containing protein	NA
UHGV-0100722_4	eggNOG-mapper	1122931.AUAE01000005_gene3274	VRR_NUC	NA
UHGV-0100722_4	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0100722_4	Structural annotation	PF08774	NA	NA
UHGV-0100722_6	PHROG	phrog_16304	NA	unknown function
UHGV-0100722_6	UniRef90	UniRef90_A0A174JNZ9	Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit	NA
UHGV-0100722_6	eggNOG-mapper	742726.HMPREF9448_02012	HNH endonuclease	NA
UHGV-0100722_6	Pfam	PF19808	NA	DUF6291
UHGV-0100722_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0100722_7	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0100722_7	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0100722_7	UniRef90	UniRef90_A0A1Y3YRG2	DNA helicase	NA
UHGV-0100722_7	eggNOG-mapper	1077285.AGDG01000032_gene4173	Participates in initiation and elongation during chromosome replication	NA
UHGV-0100722_7	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0100722_7	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0100722_7	COG	COG0305	Replicative DNA helicase	NA
UHGV-0100722_7	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0100722_10	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0100722_10	UniRef90	UniRef90_A0A412Z5E6	PAPS_reduct domain-containing protein	NA
UHGV-0100722_10	eggNOG-mapper	1347393.HG726021_gene401	NA	NA
UHGV-0100722_10	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0100722_10	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0100722_11	Structural annotation	PF20020	NA	NA
UHGV-0100722_13	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0100722_13	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0100722_13	UniRef90	UniRef90_UPI0015F9FF37	N-6 DNA methylase	NA
UHGV-0100722_13	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0100722_13	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0100722_13	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0100722_13	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0100722_13	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0100722_14	UniRef90	UniRef90_A0A7K0JNA1	NA	NA
UHGV-0100722_14	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-0100722_14	Pfam	PF04448	NA	DUF551
UHGV-0100722_14	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0100722_18	eggNOG-mapper	411901.BACCAC_01173	NA	NA
UHGV-0100722_19	PHROG	phrog_12005	NA	unknown function
UHGV-0100722_21	PHROG	phrog_874	NA	unknown function
UHGV-0100722_21	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0100722_21	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0100722_22	PHROG	phrog_98	NA	unknown function
UHGV-0100722_22	UniRef90	UniRef90_UPI000E57ECE2	YopX family protein	NA
UHGV-0100722_22	eggNOG-mapper	1347393.HG726022_gene3579	YopX protein	NA
UHGV-0100722_22	Pfam	PF09643	YopX protein	YopX
UHGV-0100722_22	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0100722_22	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0100722_23	Structural annotation	PF08928	NA	NA
UHGV-0100722_26	Structural annotation	PF02699, MF_01354, NF005100, COG5475	NA	NA
UHGV-0100722_27	UniRef90	UniRef90_A0A415IS58	LacI family DNA-binding transcriptional regulator	NA
UHGV-0100722_27	Structural annotation	PF13384, TIGR04381	NA	NA
UHGV-0100722_28	PHROG	phrog_35041	NA	unknown function
UHGV-0100722_29	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0100722_29	UniRef90	UniRef90_UPI001899E1E5	helix-turn-helix transcriptional regulator	NA
UHGV-0100722_29	eggNOG-mapper	547042.BACCOPRO_00729	Helix-turn-helix XRE-family like proteins	NA
UHGV-0100722_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100722_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0100722_30	eggNOG-mapper	869213.JCM21142_114629	NA	NA
UHGV-0100722_31	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0100722_31	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-0100722_32	PHROG	phrog_38431	NA	unknown function
UHGV-0100722_32	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-0100722_32	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-0100722_33	PHROG	phrog_34053	NA	unknown function
UHGV-0100722_34	PHROG	phrog_28898	NA	unknown function
UHGV-0100722_34	UniRef90	UniRef90_R5UN07	Conserved domain protein	NA
UHGV-0100722_34	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-0100722_34	Structural annotation	PF10781	NA	NA
UHGV-0100722_35	PHROG	phrog_31654	NA	unknown function
UHGV-0100722_35	eggNOG-mapper	762968.HMPREF9441_00554	NA	NA
UHGV-0100722_36	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0100722_36	UniRef90	UniRef90_A0A174JIX7	Endonuclease	NA
UHGV-0100722_36	eggNOG-mapper	1208587.S6CQN3_9CAUD	HNH endonuclease	NA
UHGV-0100722_36	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0100722_36	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0100722_36	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0100722_36	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0100722_37	PHROG	phrog_16490	NA	unknown function
UHGV-0100722_37	UniRef90	UniRef90_A0A7M1RSH1	Outer capsid protein/viral fiber	NA
UHGV-0100722_37	eggNOG-mapper	762968.HMPREF9441_00555	NA	NA
UHGV-0100722_38	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-0100722_38	eggNOG-mapper	762982.HMPREF9442_01200	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0100722_38	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0100722_39	PHROG	phrog_26448	NA	unknown function
UHGV-0100722_39	eggNOG-mapper	762984.HMPREF9445_00190	NA	NA
UHGV-0100722_39	Pfam	PF20647	NA	DUF6808
UHGV-0100722_39	Structural annotation	PF20647	NA	NA
UHGV-0100722_41	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0100722_41	eggNOG-mapper	762984.HMPREF9445_00185	Leucine-rich repeat (LRR) protein	NA
UHGV-0100722_41	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0100722_41	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0100722_43	Structural annotation	PF14607, MF_01372, NF038393	NA	NA
UHGV-0100722_44	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0100722_44	PHROG	phrog_435	endolysin	lysis
UHGV-0100722_44	UniRef90	UniRef90_A0A414Q7Y1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0100722_44	eggNOG-mapper	657309.BXY_08040	COG NOG32858 non supervised orthologous group	NA
UHGV-0100722_44	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0100722_44	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0100722_44	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0100722_46	UniRef90	UniRef90_UPI000E53ECB8	phage holin family protein	NA
UHGV-0100722_46	eggNOG-mapper	1121100.JCM6294_559	NA	NA
UHGV-0100722_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0100722_46	Structural annotation	PF05105, NF035928, COG4824	NA	NA
UHGV-0100722_47	eggNOG-mapper	679935.Alfi_2719	NA	NA
UHGV-0100722_50	eggNOG-mapper	742727.HMPREF9447_04856	NA	NA
UHGV-0100722_51	PHROG	phrog_38044	NA	unknown function
UHGV-0100722_51	UniRef90	UniRef90_UPI001E5F740B	NA	NA
UHGV-0100722_51	eggNOG-mapper	1236514.BAKL01000085_gene4861	NA	NA
UHGV-0100722_52	PHROG	phrog_26568	NA	unknown function
UHGV-0100722_52	eggNOG-mapper	1122971.BAME01000119_gene6178	NA	NA
UHGV-0100722_52	Structural annotation	PF02927, PF19266	NA	NA
UHGV-0100722_53	PHROG	phrog_22157	NA	unknown function
UHGV-0100722_53	eggNOG-mapper	411476.BACOVA_03941	NA	NA
UHGV-0100722_53	Structural annotation	PF05629, PF17642, PF06605, TIGR01646, COG3157	NA	NA
UHGV-0100722_54	PHROG	phrog_26233	NA	unknown function
UHGV-0100722_54	eggNOG-mapper	411476.BACOVA_03937	NA	NA
UHGV-0100722_55	PHROG	phrog_26705	NA	unknown function
UHGV-0100722_55	UniRef90	UniRef90_A0A414Q7X1	Phage tail tape measure protein	NA
UHGV-0100722_55	eggNOG-mapper	1122971.BAME01000119_gene6173	Phage-related minor tail protein	NA
UHGV-0100722_55	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0100722_56	KOfam	K19159	yefM; antitoxin YefM	NA
UHGV-0100722_56	PHROG	phrog_10078	NA	unknown function
UHGV-0100722_56	UniRef90	UniRef90_B0NMA5	Antitoxin	NA
UHGV-0100722_56	eggNOG-mapper	449673.BACSTE_00563	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0100722_56	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0100722_56	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-0100722_56	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-0100722_57	KOfam	K19158	yoeB; toxin YoeB [EC:3.1.-.-]	NA
UHGV-0100722_57	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0100722_57	UniRef90	UniRef90_B0NMA6	Putative mRNA interferase YoeB	NA
UHGV-0100722_57	eggNOG-mapper	449673.BACSTE_00564	addiction module toxin, Txe YoeB family	NA
UHGV-0100722_57	Pfam	PF06769	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
UHGV-0100722_57	NCBIFam	TIGR02116.1	Txe/YoeB family addiction module toxin	NA
UHGV-0100722_57	COG	COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	NA
UHGV-0100722_57	Structural annotation	PF06769, TIGR02116, COG4115	NA	NA
UHGV-0100722_58	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0100722_58	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0100722_58	UniRef90	UniRef90_B0NM69	Phage regulatory protein, Rha family	NA
UHGV-0100722_58	eggNOG-mapper	449673.BACSTE_00571	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0100722_58	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0100722_58	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0100722_58	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0100722_58	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0100722_58	Structural annotation	PF09669, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0100722_60	PHROG	phrog_26299	NA	unknown function
UHGV-0100722_60	eggNOG-mapper	411476.BACOVA_03935	NA	NA
UHGV-0100722_61	PHROG	phrog_6195	tail protein	tail
UHGV-0100722_61	UniRef90	UniRef90_A0A374UT65	ABC transporter	NA
UHGV-0100722_61	eggNOG-mapper	449673.BACSTE_00574	NA	NA
UHGV-0100722_62	PHROG	phrog_25857	NA	unknown function
UHGV-0100722_63	PHROG	phrog_24272	NA	unknown function
UHGV-0100722_63	eggNOG-mapper	449673.BACSTE_00576	NA	NA
UHGV-0100722_63	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0100722_64	PHROG	phrog_23418	NA	unknown function
UHGV-0100722_64	eggNOG-mapper	449673.BACSTE_00577	NA	NA
UHGV-0100722_65	eggNOG-mapper	449673.BACSTE_00578	NA	NA
UHGV-0100722_65	Structural annotation	PF20459	NA	NA
UHGV-0100722_67	PHROG	phrog_10	major head protein	head and packaging
UHGV-0100722_67	UniRef90	UniRef90_UPI001106E187	phage major capsid protein	NA
UHGV-0100722_67	eggNOG-mapper	449673.BACSTE_00580	Phage capsid family	NA
UHGV-0100722_67	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0100722_67	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0100722_67	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0100722_67	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0100722_68	KOfam	K06904	NA	NA
UHGV-0100722_68	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0100722_68	UniRef90	UniRef90_B0NM79	Phage prohead protease, HK97 family	NA
UHGV-0100722_68	eggNOG-mapper	449673.BACSTE_00581	Caudovirus prohead serine protease	NA
UHGV-0100722_68	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0100722_68	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0100722_68	COG	COG3740	Phage head maturation protease	NA
UHGV-0100722_68	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0100722_69	PHROG	phrog_12	portal protein	head and packaging
UHGV-0100722_69	UniRef90	UniRef90_UPI001485B311	phage portal protein	NA
UHGV-0100722_69	eggNOG-mapper	449673.BACSTE_00582	Phage portal protein	NA
UHGV-0100722_69	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0100722_69	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0100722_70	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0100722_70	UniRef90	UniRef90_UPI0011064D5D	phage terminase large subunit	NA
UHGV-0100722_70	eggNOG-mapper	449673.BACSTE_00583	domain protein	NA
UHGV-0100722_70	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0100722_70	COG	COG5410	NA	NA
UHGV-0100722_70	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0100722_71	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0100722_71	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0100722_71	UniRef90	UniRef90_B0NM82	Terminase small subunit	NA
UHGV-0100722_71	eggNOG-mapper	449673.BACSTE_00584	Terminase small subunit	NA
UHGV-0100722_71	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0100722_71	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0100722_71	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0100722_72	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0100722_72	PHROG	phrog_1	integrase	integration and excision
UHGV-0100722_72	UniRef90	UniRef90_B0NM83	Site-specific recombinase, phage integrase family	NA
UHGV-0100722_72	eggNOG-mapper	449673.BACSTE_00585	Phage integrase SAM-like domain	NA
UHGV-0100722_72	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0100722_72	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0100722_72	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0100722_72	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA