UHGV-0100784

Genome information

Genome length 36,182 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100784
vOTU ID	vOTU-061134
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_211719
BioSample	SAMEA3449233
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - plasmid or chromosomal
viralVerify score	-1.18
Jumbo phage	No

Genome content
Genome length	36,182 bps
GC content	54.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	89.12%
Average CDS length	579.05 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100784_1	eggNOG-mapper	657322.FPR_23130	NA	NA
UHGV-0100784_1	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0100784_2	PHROG	phrog_625	NA	unknown function
UHGV-0100784_2	UniRef90	UniRef90_A0A6L5YHS1	ASCH domain-containing protein	NA
UHGV-0100784_2	eggNOG-mapper	926549.KI421517_gene2497	NA	NA
UHGV-0100784_2	Structural annotation	PF12961, NF003443, COG2947	NA	NA
UHGV-0100784_4	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0100784_4	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0100784_4	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0100784_4	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0100784_4	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0100784_4	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0100784_8	UniRef90	UniRef90_UPI0018971728	HNH endonuclease	NA
UHGV-0100784_8	eggNOG-mapper	324057.Pjdr2_1538	HNH endonuclease	NA
UHGV-0100784_8	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0100784_9	Structural annotation	PF18152	NA	NA
UHGV-0100784_10	PHROG	phrog_1066	NA	unknown function
UHGV-0100784_10	eggNOG-mapper	1111134.HMPREF1253_0387	NA	NA
UHGV-0100784_10	Structural annotation	TIGR01558, COG3747	NA	NA
UHGV-0100784_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0100784_11	UniRef90	UniRef90_A0A1M4ZG50	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0100784_11	eggNOG-mapper	1211814.CAPG01000074_gene3457	Terminase	NA
UHGV-0100784_11	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0100784_11	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0100784_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0100784_11	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0100784_12	PHROG	phrog_12	portal protein	head and packaging
UHGV-0100784_12	UniRef90	UniRef90_H6LCC0	Prophage LambdaBa04, portal protein	NA
UHGV-0100784_12	eggNOG-mapper	931626.Awo_c35110	Phage portal protein	NA
UHGV-0100784_12	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0100784_12	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0100784_12	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0100784_13	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0100784_13	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0100784_13	UniRef90	UniRef90_UPI00085C9406	Clp protease ClpP	NA
UHGV-0100784_13	eggNOG-mapper	1334046.AYTB01000013_gene442	Serine dehydrogenase proteinase	NA
UHGV-0100784_13	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0100784_13	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0100784_13	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0100784_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0100784_14	UniRef90	UniRef90_A0A6B9SRA3	Major capsid protein	NA
UHGV-0100784_14	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0100784_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0100784_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0100784_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0100784_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0100784_15	PHROG	phrog_5223	neck protein	connector
UHGV-0100784_15	UniRef90	UniRef90_D9SQ12	Putative phage protein	NA
UHGV-0100784_15	eggNOG-mapper	573061.Clocel_2435	NA	NA
UHGV-0100784_15	Structural annotation	TIGR01560	NA	NA
UHGV-0100784_16	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0100784_16	UniRef90	UniRef90_A0A7M2A7Q8	Phage head closure protein	NA
UHGV-0100784_16	eggNOG-mapper	1121428.DESHY_20140___1	head-tail adaptor	NA
UHGV-0100784_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0100784_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0100784_17	UniRef90	UniRef90_UPI0006C82A14	HK97 gp10 family phage protein	NA
UHGV-0100784_17	eggNOG-mapper	1408311.JNJM01000036_gene53	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0100784_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0100784_17	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0100784_18	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0100784_18	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0100784_18	UniRef90	UniRef90_A0A847H6X7	3'-5' exonuclease	NA
UHGV-0100784_18	eggNOG-mapper	1203606.HMPREF1526_00999	EXOIII	NA
UHGV-0100784_18	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0100784_18	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0100784_18	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0100784_19	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0100784_19	eggNOG-mapper	1203606.HMPREF1526_00999	EXOIII	NA
UHGV-0100784_19	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0100784_19	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0100784_20	eggNOG-mapper	1235799.C818_00435	NA	NA
UHGV-0100784_20	Structural annotation	PF20765	NA	NA
UHGV-0100784_21	PHROG	phrog_88	major tail protein	tail
UHGV-0100784_21	UniRef90	UniRef90_A0A1W6WCR7	Phage tail protein	NA
UHGV-0100784_21	eggNOG-mapper	663278.Ethha_1843	phage major tail protein, phi13 family	NA
UHGV-0100784_21	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0100784_21	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0100784_22	PHROG	phrog_709	NA	unknown function
UHGV-0100784_22	eggNOG-mapper	1111121.HMPREF1247_1238	NA	NA
UHGV-0100784_22	Structural annotation	PF11836	NA	NA
UHGV-0100784_23	PHROG	phrog_3033	NA	unknown function
UHGV-0100784_23	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0100784_23	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0100784_24	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0100784_24	UniRef90	UniRef90_A0A1Q6JJ53	Phage tail tape measure protein	NA
UHGV-0100784_24	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-0100784_24	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0100784_24	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0100784_24	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0100784_24	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0100784_25	PHROG	phrog_36410	NA	unknown function
UHGV-0100784_25	UniRef90	UniRef90_UPI001956B909	phage tail family protein	NA
UHGV-0100784_25	eggNOG-mapper	1120746.CCNL01000017_gene2787	NA	NA
UHGV-0100784_25	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0100784_25	COG	COG4722	Phage-related protein YomH	NA
UHGV-0100784_25	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0100784_26	PHROG	phrog_538	minor tail protein	tail
UHGV-0100784_26	UniRef90	UniRef90_UPI00195822CE	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0100784_26	eggNOG-mapper	1120746.CCNL01000017_gene2788	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0100784_26	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0100784_26	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0100784_27	PHROG	phrog_1220	head protein	head and packaging
UHGV-0100784_27	UniRef90	UniRef90_UPI00178079AB	structural protein	NA
UHGV-0100784_27	eggNOG-mapper	768704.Desmer_4452	COG NOG18825 non supervised orthologous group	NA
UHGV-0100784_27	Structural annotation	PF20747	NA	NA
UHGV-0100784_28	eggNOG-mapper	411468.CLOSCI_00536	NA	NA
UHGV-0100784_28	Structural annotation	PF13753, NF009633	NA	NA
UHGV-0100784_29	PHROG	phrog_11262	tail protein	tail
UHGV-0100784_29	UniRef90	UniRef90_A0A174VYJ7	Serine/threonine-protein kinase pkn1	NA
UHGV-0100784_29	eggNOG-mapper	411902.CLOBOL_03866	Sulfatase-modifying factor enzyme 1	NA
UHGV-0100784_29	Pfam	PF03781	Sulfatase-modifying factor enzyme 1	FGE-sulfatase
UHGV-0100784_29	Structural annotation	PF03781, MF_02035, TIGR03529, COG1262	NA	NA
UHGV-0100784_30	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0100784_30	UniRef90	UniRef90_A0A4Q5C4R2	Diversity-generating retroelement protein Avd	NA
UHGV-0100784_30	eggNOG-mapper	411902.CLOBOL_03865	23S rRNA-intervening sequence protein	NA
UHGV-0100784_30	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-0100784_30	NCBIFam	NF033474.1	diversity-generating retroelement protein Avd	NA
UHGV-0100784_30	Structural annotation	PF05635, NF033474	NA	NA
UHGV-0100784_31	KOfam	K21038	brt; reverse transcriptase [EC:2.7.7.49]	NA
UHGV-0100784_31	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0100784_31	UniRef90	UniRef90_A0A174XM65	Retron-type reverse transcriptase	NA
UHGV-0100784_31	eggNOG-mapper	397290.C810_00436	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0100784_31	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0100784_31	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0100784_31	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0100784_31	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0100784_33	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0100784_33	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-0100784_33	UniRef90	UniRef90_UPI0019599082	M23 family metallopeptidase	NA
UHGV-0100784_33	eggNOG-mapper	1120746.CCNL01000017_gene3150	Peptidase family M23	NA
UHGV-0100784_33	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0100784_33	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0100784_33	Structural annotation	PF01551, MF_00664, NF040883, COG0739	NA	NA
UHGV-0100784_34	PHROG	phrog_4105	NA	unknown function
UHGV-0100784_34	eggNOG-mapper	33035.JPJF01000043_gene996	NA	NA
UHGV-0100784_35	PHROG	phrog_443	holin	lysis
UHGV-0100784_35	UniRef90	UniRef90_UPI001C3BFF52	Holin	NA
UHGV-0100784_35	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0100784_35	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0100784_35	Structural annotation	PF16945	NA	NA
UHGV-0100784_36	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0100784_36	UniRef90	UniRef90_UPI0009EB5089	helix-turn-helix domain-containing protein	NA
UHGV-0100784_36	eggNOG-mapper	755731.Clo1100_2450	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0100784_36	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0100784_36	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0100784_38	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0100784_38	PHROG	phrog_4646	transposase	integration and excision
UHGV-0100784_38	UniRef90	UniRef90_A0A1Q6JJ51	IS30 family transposase	NA
UHGV-0100784_38	eggNOG-mapper	411483.FAEPRAA2165_01933	PFAM Integrase catalytic region	NA
UHGV-0100784_38	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0100784_38	NCBIFam	NF033563.0	IS30 family transposase	NA
UHGV-0100784_38	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-0100784_38	Structural annotation	PF03400, PF13384, NF033563, COG2826	NA	NA
UHGV-0100784_40	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0100784_40	PHROG	phrog_37855	NA	unknown function
UHGV-0100784_40	UniRef90	UniRef90_UPI001C034E9A	sporulation transcription factor Spo0A	NA
UHGV-0100784_40	eggNOG-mapper	411471.SUBVAR_05179	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0100784_40	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0100784_40	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0100784_40	NCBIFam	TIGR02875.1	sporulation transcription factor Spo0A	NA
UHGV-0100784_40	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0100784_40	Structural annotation	PF08769, PF00072, MF_00099, TIGR02875, COG0745	NA	NA
UHGV-0100784_41	KOfam	K06399	spoIVB; stage IV sporulation protein B [EC:3.4.21.116]	NA
UHGV-0100784_41	UniRef90	UniRef90_UPI001C01C150	SpoIVB peptidase	NA
UHGV-0100784_41	eggNOG-mapper	411471.SUBVAR_05180	stage IV sporulation protein B	NA
UHGV-0100784_41	Pfam	PF17820	PDZ domain	PDZ_6
UHGV-0100784_41	Pfam	PF05580	SpoIVB peptidase S55	Peptidase_S55
UHGV-0100784_41	NCBIFam	TIGR02860.1	SpoIVB peptidase	NA
UHGV-0100784_41	COG	COG3975	Predicted metalloprotease, contains C-terminal PDZ domain	NA
UHGV-0100784_42	PHROG	phrog_34276	NA	unknown function
UHGV-0100784_42	UniRef90	UniRef90_A0A373BDX7	YitT family protein	NA
UHGV-0100784_42	eggNOG-mapper	641112.ACOK01000021_gene2781	NA	NA
UHGV-0100784_42	Pfam	PF02588	Uncharacterised 5xTM membrane BCR, YitT family COG1284	YitT_membrane
UHGV-0100784_42	Pfam	PF10035	NA	DUF2179
UHGV-0100784_42	COG	COG1284	NA	NA
UHGV-0100784_42	Structural annotation	PF02588, PF10035, MF_01515, NF003191, COG1284	NA	NA
UHGV-0100784_43	eggNOG-mapper	568816.Acin_1447	Aldo/keto reductase family	NA
UHGV-0100784_43	COG	COG0667	Pyridoxal reductase PdxI or related oxidoreductase, aldo/keto reductase family	NA
UHGV-0100784_44	KOfam	K14059	int; integrase	NA
UHGV-0100784_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0100784_44	UniRef90	UniRef90_A0A3D1PQQ8	Tyr recombinase domain-containing protein	NA
UHGV-0100784_44	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0100784_44	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0100784_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0100784_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0100784_44	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0100784_48	PHROG	phrog_13890	NA	unknown function
UHGV-0100784_48	UniRef90	UniRef90_UPI001CBBD546	antitoxin	NA
UHGV-0100784_48	eggNOG-mapper	1378168.N510_00539	NA	NA
UHGV-0100784_53	UniRef90	UniRef90_UPI0010F9FEF7	phage replication protein	NA
UHGV-0100784_53	Structural annotation	PF13022	NA	NA
UHGV-0100784_55	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0100784_55	PHROG	phrog_1883	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0100784_55	UniRef90	UniRef90_A0A6N8H0D5	SF3 helicase domain-containing protein	NA
UHGV-0100784_55	eggNOG-mapper	457415.HMPREF1006_01803	D5 N terminal like	NA
UHGV-0100784_55	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0100784_55	Pfam	PF19263	NA	DUF5906
UHGV-0100784_55	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0100784_55	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0100784_55	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0100784_56	UniRef90	UniRef90_A0A3D1PT50	HTH cro/C1-type domain-containing protein	NA