UHGV-0100810

Genome information

Genome length 58,952 bps

CDS count 102

Completeness 99.90% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100810
vOTU ID	vOTU-013052
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_203886
BioSample	SAMEA3449165
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.39
Jumbo phage	No

Genome content
Genome length	58,952 bps
GC content	48.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	102
CDS density	84.64%
Average CDS length	493.59 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100810_1	eggNOG-mapper	748224.HMPREF9436_02229	NA	NA
UHGV-0100810_4	Structural annotation	PF07870, MF_01506	NA	NA
UHGV-0100810_6	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0100810_6	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0100810_6	Structural annotation	PF10651	NA	NA
UHGV-0100810_7	PHROG	phrog_15303	NA	unknown function
UHGV-0100810_7	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0100810_9	KOfam	K07273	acm; lysozyme	NA
UHGV-0100810_9	PHROG	phrog_291	endolysin	lysis
UHGV-0100810_9	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0100810_9	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0100810_9	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0100810_9	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0100810_9	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0100810_10	PHROG	phrog_1382	NA	unknown function
UHGV-0100810_10	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0100810_12	PHROG	phrog_9534	head protein	head and packaging
UHGV-0100810_12	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0100810_12	COG	COG5492	NA	NA
UHGV-0100810_13	PHROG	phrog_18725	NA	unknown function
UHGV-0100810_13	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0100810_14	PHROG	phrog_13879	NA	unknown function
UHGV-0100810_14	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0100810_14	Pfam	PF19789	NA	DUF6273
UHGV-0100810_14	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0100810_15	PHROG	phrog_1194	NA	unknown function
UHGV-0100810_15	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0100810_15	Pfam	PF20458	NA	DUF6711
UHGV-0100810_15	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0100810_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0100810_16	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-0100810_16	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0100810_16	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0100810_17	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0100810_18	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0100810_18	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0100810_18	Pfam	PF16478	NA	DUF5055
UHGV-0100810_18	Structural annotation	PF16478	NA	NA
UHGV-0100810_19	PHROG	phrog_158	major tail protein	tail
UHGV-0100810_19	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0100810_19	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0100810_19	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0100810_20	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0100810_22	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0100810_22	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0100810_23	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0100810_23	Structural annotation	TIGR01560	NA	NA
UHGV-0100810_24	PHROG	phrog_29	major head protein	head and packaging
UHGV-0100810_24	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0100810_24	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0100810_24	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0100810_24	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0100810_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0100810_27	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0100810_27	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0100810_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0100810_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0100810_28	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0100810_28	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0100810_28	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0100810_28	COG	COG5410	NA	NA
UHGV-0100810_28	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0100810_30	Structural annotation	NF009949	NA	NA
UHGV-0100810_32	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0100810_32	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0100810_32	UniRef90	UniRef90_UPI001A9B5A42	recombinase family protein	NA
UHGV-0100810_32	eggNOG-mapper	1443122.Z958_05795	Resolvase, N terminal domain	NA
UHGV-0100810_32	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0100810_32	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0100810_32	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0100810_33	UniRef90	UniRef90_UPI001C02D1DF	winged helix-turn-helix transcriptional regulator	NA
UHGV-0100810_33	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0100810_35	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0100810_36	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0100810_36	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0100810_36	UniRef90	UniRef90_A0A1Y4EUA0	Bro-N domain-containing protein	NA
UHGV-0100810_36	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0100810_36	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0100810_36	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0100810_36	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0100810_37	Structural annotation	PF12869, MF_00720, NF040991, COG4085	NA	NA
UHGV-0100810_40	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0100810_40	eggNOG-mapper	742738.HMPREF9460_00717	YqaJ viral recombinase family	NA
UHGV-0100810_40	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0100810_41	PHROG	phrog_1709	NA	unknown function
UHGV-0100810_41	eggNOG-mapper	500632.CLONEX_01053	NA	NA
UHGV-0100810_42	PHROG	phrog_419	NA	unknown function
UHGV-0100810_42	UniRef90	UniRef90_A6MAI4	Gp119	NA
UHGV-0100810_42	eggNOG-mapper	768486.EHR_02665	NA	NA
UHGV-0100810_42	Structural annotation	PF14083	NA	NA
UHGV-0100810_43	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0100810_43	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0100810_43	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-0100810_43	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0100810_43	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0100810_43	COG	COG0305	Replicative DNA helicase	NA
UHGV-0100810_43	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0100810_44	PHROG	phrog_15768	NA	unknown function
UHGV-0100810_44	UniRef90	UniRef90_UPI001E324F93	NA	NA
UHGV-0100810_44	eggNOG-mapper	1189620.AJXL01000045_gene1040	NA	NA
UHGV-0100810_44	Pfam	PF19808	NA	DUF6291
UHGV-0100810_44	Structural annotation	PF19808	NA	NA
UHGV-0100810_45	UniRef90	UniRef90_UPI001AD832E5	Lar family restriction alleviation protein	NA
UHGV-0100810_45	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0100810_45	Structural annotation	PF14354	NA	NA
UHGV-0100810_47	Pfam	PF04448	NA	DUF551
UHGV-0100810_47	Structural annotation	NF041588	NA	NA
UHGV-0100810_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0100810_51	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0100810_51	UniRef90	UniRef90_A0A2A5DTS6	Transcriptional regulator	NA
UHGV-0100810_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100810_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0100810_56	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0100810_56	eggNOG-mapper	936574.HMPREF1508_1307	restriction endonuclease	NA
UHGV-0100810_56	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0100810_56	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0100810_59	Structural annotation	PF16677	NA	NA
UHGV-0100810_60	PHROG	phrog_924	NA	unknown function
UHGV-0100810_60	Pfam	PF04448	NA	DUF551
UHGV-0100810_60	Structural annotation	NF041588	NA	NA
UHGV-0100810_61	Structural annotation	MF_00085, NF003076, COG0231	NA	NA
UHGV-0100810_63	Structural annotation	MF_00085, TIGR00037, COG0231	NA	NA
UHGV-0100810_65	Structural annotation	PF03465, COG2331	NA	NA
UHGV-0100810_66	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0100810_66	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0100810_66	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0100810_66	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0100810_66	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0100810_66	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0100810_66	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0100810_66	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0100810_67	PHROG	phrog_4068	NA	unknown function
UHGV-0100810_67	Structural annotation	PF06657	NA	NA
UHGV-0100810_72	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0100810_72	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0100810_72	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0100810_72	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0100810_73	Pfam	PF04448	NA	DUF551
UHGV-0100810_73	Structural annotation	PF20331, COG5264	NA	NA
UHGV-0100810_74	PHROG	phrog_35094	NA	unknown function
UHGV-0100810_74	eggNOG-mapper	457424.BFAG_02409	NA	NA
UHGV-0100810_75	PHROG	phrog_18107	NA	unknown function
UHGV-0100810_75	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0100810_75	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0100810_75	Structural annotation	PF05037	NA	NA
UHGV-0100810_76	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0100810_76	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0100810_76	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0100810_76	Pfam	PF13479	AAA domain	AAA_24
UHGV-0100810_76	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0100810_78	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0100810_78	eggNOG-mapper	1165096.ARWF01000001_gene689	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0100810_78	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0100810_78	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0100810_78	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0100810_79	Structural annotation	PF14143	NA	NA
UHGV-0100810_80	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0100810_80	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0100810_82	Structural annotation	TIGR03826	NA	NA
UHGV-0100810_84	Structural annotation	PF10922	NA	NA
UHGV-0100810_85	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0100810_85	UniRef90	UniRef90_UPI001D011E8C	XRE family transcriptional regulator	NA
UHGV-0100810_85	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0100810_85	Structural annotation	TIGR03070	NA	NA
UHGV-0100810_86	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0100810_86	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-0100810_86	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0100810_86	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0100810_86	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0100810_86	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0100810_89	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0100810_89	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100810_89	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0100810_91	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0100810_91	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0100810_91	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0100810_91	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0100810_91	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0100810_91	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0100810_91	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0100810_92	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0100810_92	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0100810_92	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0100810_92	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0100810_92	Pfam	PF13614	AAA domain	AAA_31
UHGV-0100810_92	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0100810_92	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0100810_94	Structural annotation	PF07878	NA	NA
UHGV-0100810_95	UniRef90	UniRef90_J4WA52	Ribbon-helix-helix protein, CopG family	NA
UHGV-0100810_95	eggNOG-mapper	1235802.C823_04889	NA	NA
UHGV-0100810_96	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0100810_96	UniRef90	UniRef90_A0A1V4I7N7	Bro-N domain-containing protein	NA
UHGV-0100810_96	eggNOG-mapper	742738.HMPREF9460_02498	BRO family, N-terminal domain	NA
UHGV-0100810_96	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0100810_96	COG	COG3617	Prophage antirepressor	NA
UHGV-0100810_96	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0100810_97	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0100810_98	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0100810_99	PHROG	phrog_16490	NA	unknown function
UHGV-0100810_99	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA