UHGV-0100871

Genome information

Genome length 35,784 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9620

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100871
vOTU ID	vOTU-064490
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_201521
BioSample	SAMEA3449168
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9620
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.67
Jumbo phage	No

Genome content
Genome length	35,784 bps
GC content	27.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	91.98%
Average CDS length	500.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100871_5	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0100871_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0100871_6	PHROG	phrog_9611	endolysin	lysis
UHGV-0100871_6	UniRef90	UniRef90_R6H5X6	N-acetylmuramyl-L-alanine amidase negative regulator of AmpC AmpD	NA
UHGV-0100871_6	eggNOG-mapper	642492.Clole_0841	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0100871_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0100871_6	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0100871_6	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0100871_6	Structural annotation	PF01510, PF18342, PF08239, NF040678, NF008758, COG5632	NA	NA
UHGV-0100871_8	PHROG	phrog_13256	NA	unknown function
UHGV-0100871_8	eggNOG-mapper	883114.HMPREF9709_01177	NA	NA
UHGV-0100871_10	PHROG	phrog_9116	tail protein	tail
UHGV-0100871_10	UniRef90	UniRef90_A0A3D1PJI0	Collar domain-containing protein	NA
UHGV-0100871_10	eggNOG-mapper	694427.Palpr_1970	tail collar domain protein	NA
UHGV-0100871_10	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0100871_10	COG	COG4675	Phage tail collar domain	NA
UHGV-0100871_10	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0100871_13	Structural annotation	PF14594, MF_01370, NF033848, COG4379	NA	NA
UHGV-0100871_14	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0100871_14	eggNOG-mapper	903814.ELI_3197	Phage tail tape measure protein, TP901 family	NA
UHGV-0100871_14	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0100871_15	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0100871_15	UniRef90	UniRef90_D2IZH3	PblA-like tail protein	NA
UHGV-0100871_15	eggNOG-mapper	1329516.JPST01000014_gene668	tape measure	NA
UHGV-0100871_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0100871_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0100871_15	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0100871_16	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0100871_16	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0100871_17	eggNOG-mapper	1262449.CP6013_3230	NA	NA
UHGV-0100871_18	PHROG	phrog_706	NA	unknown function
UHGV-0100871_18	UniRef90	UniRef90_UPI00117869B1	bacteriophage Gp15 family protein	NA
UHGV-0100871_18	eggNOG-mapper	1292035.H476_1007	Bacteriophage Gp15 protein	NA
UHGV-0100871_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0100871_18	Structural annotation	PF06854	NA	NA
UHGV-0100871_19	PHROG	phrog_4450	NA	unknown function
UHGV-0100871_19	UniRef90	UniRef90_UPI001C0AC01D	AP endonuclease	NA
UHGV-0100871_19	eggNOG-mapper	1540257.JQMW01000013_gene735	NA	NA
UHGV-0100871_19	Pfam	PF20378	NA	DUF6673
UHGV-0100871_19	Structural annotation	PF20378	NA	NA
UHGV-0100871_20	PHROG	phrog_3099	NA	unknown function
UHGV-0100871_20	eggNOG-mapper	742765.HMPREF9457_02132	NA	NA
UHGV-0100871_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0100871_21	PHROG	phrog_3266	tail completion	connector
UHGV-0100871_21	UniRef90	UniRef90_UPI001F261AF5	chloramphenicol resistance protein	NA
UHGV-0100871_21	eggNOG-mapper	1499683.CCFF01000017_gene2570	NA	NA
UHGV-0100871_21	Structural annotation	PF12691	NA	NA
UHGV-0100871_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0100871_22	UniRef90	UniRef90_UPI00067E9657	minor capsid protein	NA
UHGV-0100871_22	eggNOG-mapper	536233.CLO_0889	Minor capsid protein	NA
UHGV-0100871_22	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0100871_22	Structural annotation	PF11114	NA	NA
UHGV-0100871_23	PHROG	phrog_3366	NA	unknown function
UHGV-0100871_23	Pfam	PF20536	NA	DUF6751
UHGV-0100871_23	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0100871_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0100871_24	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0100871_25	PHROG	phrog_544	major head protein	head and packaging
UHGV-0100871_25	UniRef90	UniRef90_UPI000E5CD0B7	N4-gp56 family major capsid protein	NA
UHGV-0100871_25	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0100871_25	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0100871_25	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0100871_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0100871_26	UniRef90	UniRef90_UPI0006C08B27	phage scaffolding protein	NA
UHGV-0100871_26	eggNOG-mapper	641112.ACOK01000073_gene2893	Phage minor structural protein GP20	NA
UHGV-0100871_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0100871_26	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0100871_28	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0100871_28	PHROG	phrog_3895	ADP-ribosyltransferase exoenzyme toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0100871_28	eggNOG-mapper	1151292.QEW_4396	COG3209 Rhs family protein	NA
UHGV-0100871_28	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0100871_28	COG	COG2369	NA	NA
UHGV-0100871_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0100871_29	UniRef90	UniRef90_A0A349GQA4	Phage capsid protein (Fragment)	NA
UHGV-0100871_29	eggNOG-mapper	642492.Clole_0816	NA	NA
UHGV-0100871_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0100871_29	COG	COG2369	NA	NA
UHGV-0100871_29	Structural annotation	PF06152	NA	NA
UHGV-0100871_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0100871_30	UniRef90	UniRef90_UPI001D0FF9EC	phage portal protein	NA
UHGV-0100871_30	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0100871_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0100871_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0100871_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0100871_31	UniRef90	UniRef90_R6DVT6	Phage terminase large subunit PBSX family	NA
UHGV-0100871_31	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0100871_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0100871_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0100871_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0100871_31	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0100871_32	eggNOG-mapper	632518.Calow_0826	NA	NA
UHGV-0100871_46	PHROG	phrog_20637	NA	unknown function
UHGV-0100871_46	UniRef90	UniRef90_A0A3D1YZZ1	Catalase	NA
UHGV-0100871_46	eggNOG-mapper	1410674.JNKU01000029_gene784	NA	NA
UHGV-0100871_46	Pfam	PF18907	NA	DUF5662
UHGV-0100871_46	Structural annotation	PF18907	NA	NA
UHGV-0100871_50	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0100871_50	eggNOG-mapper	1232446.BAIE02000011_gene1613	NA	NA
UHGV-0100871_50	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0100871_52	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0100871_52	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0100871_52	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-0100871_52	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0100871_52	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0100871_53	PHROG	phrog_7566	NA	unknown function
UHGV-0100871_53	UniRef90	UniRef90_A0A3A9F1H7	Phosphoenolpyruvate carboxykinase	NA
UHGV-0100871_53	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0100871_54	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0100871_54	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0100871_54	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0100871_54	Structural annotation	PF05772	NA	NA
UHGV-0100871_55	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0100871_55	UniRef90	UniRef90_A0A6N2RMY2	ERF superfamily protein	NA
UHGV-0100871_55	eggNOG-mapper	1484479.DI14_04910	ERF superfamily	NA
UHGV-0100871_55	Pfam	PF04404	ERF superfamily	ERF
UHGV-0100871_56	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0100871_56	UniRef90	UniRef90_UPI001F28B373	siphovirus Gp157 family protein	NA
UHGV-0100871_56	eggNOG-mapper	457405.FSDG_01557	Siphovirus Gp157	NA
UHGV-0100871_56	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0100871_56	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0100871_58	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0100871_58	UniRef90	UniRef90_UPI001D0B3316	replisome organizer	NA
UHGV-0100871_58	eggNOG-mapper	1139219.I569_01402	DnaD domain protein	NA
UHGV-0100871_58	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0100871_58	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0100871_60	PHROG	phrog_1123	NA	unknown function
UHGV-0100871_63	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0100871_63	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0100871_63	UniRef90	UniRef90_UPI0009849E51	phage antirepressor KilAC domain-containing protein	NA
UHGV-0100871_63	eggNOG-mapper	1589751.A0A0C5AEJ9_9CAUD	DNA binding	NA
UHGV-0100871_63	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0100871_63	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0100871_63	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0100871_64	UniRef90	UniRef90_R5ZN14	HTH_8 domain-containing protein	NA
UHGV-0100871_64	eggNOG-mapper	1131462.DCF50_p1827	NA	NA
UHGV-0100871_64	Structural annotation	PF05339, NF007271, COG3655	NA	NA
UHGV-0100871_65	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0100871_65	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0100871_65	UniRef90	UniRef90_UPI00034E7FDC	helix-turn-helix domain-containing protein	NA
UHGV-0100871_65	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-0100871_65	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100871_65	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0100871_65	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0100871_65	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF010465, COG1974, COG1476	NA	NA
UHGV-0100871_66	KOfam	K14059	int; integrase	NA
UHGV-0100871_66	PHROG	phrog_1	integrase	integration and excision
UHGV-0100871_66	UniRef90	UniRef90_A0A1Q6LBZ5	Tyr recombinase domain-containing protein	NA
UHGV-0100871_66	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-0100871_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0100871_66	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0100871_66	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA