UHGV-0100880

Genome information

Genome length 35,072 bps

CDS count 58

Completeness 89.46% (medium-quality)

geNomad score 0.9581

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100880
vOTU ID	vOTU-036258
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_227188
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9581
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.07
Jumbo phage	No

Genome content
Genome length	35,072 bps
GC content	28.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	87.44%
Average CDS length	531.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100880_2	UniRef90	UniRef90_H1PVU9	RHH_1 domain-containing protein	NA
UHGV-0100880_2	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0100880_4	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0100880_4	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0100880_5	PHROG	phrog_365	tail protein	tail
UHGV-0100880_5	UniRef90	UniRef90_UPI000E4AACAC	phage tail tube protein	NA
UHGV-0100880_5	eggNOG-mapper	1095747.HMPREF1049_1814	Phage tail tube protein	NA
UHGV-0100880_5	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0100880_5	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0100880_6	PHROG	phrog_1480	tail sheath	tail
UHGV-0100880_6	UniRef90	UniRef90_H1PVT7	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0100880_6	eggNOG-mapper	546275.FUSPEROL_02019	Phage tail sheath C-terminal domain	NA
UHGV-0100880_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0100880_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0100880_9	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0100880_9	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0100880_9	UniRef90	UniRef90_E3HBN1	AntA/AntB antirepressor domain protein	NA
UHGV-0100880_9	eggNOG-mapper	1121904.ARBP01000087_gene1905	AntA/AntB antirepressor	NA
UHGV-0100880_9	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0100880_9	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0100880_10	PHROG	phrog_37719	NA	unknown function
UHGV-0100880_10	eggNOG-mapper	1031288.AXAA01000043_gene1767	HicB family	NA
UHGV-0100880_10	Structural annotation	PF09274	NA	NA
UHGV-0100880_12	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0100880_12	UniRef90	UniRef90_UPI001D0AC4A2	KilA-N domain-containing protein	NA
UHGV-0100880_12	eggNOG-mapper	936573.HMPREF1147_1319	BRO family, N-terminal domain	NA
UHGV-0100880_12	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0100880_12	COG	COG3617	Prophage antirepressor	NA
UHGV-0100880_12	Structural annotation	PF10543, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0100880_13	PHROG	phrog_585	NA	unknown function
UHGV-0100880_13	UniRef90	UniRef90_UPI000E508EB5	NA	NA
UHGV-0100880_13	eggNOG-mapper	999425.HMPREF9186_02001	NA	NA
UHGV-0100880_13	Pfam	PF10711	NA	DUF2513
UHGV-0100880_13	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0100880_17	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0100880_17	Structural annotation	PF11863, COG3497	NA	NA
UHGV-0100880_20	PHROG	phrog_222	tail protein	tail
UHGV-0100880_20	eggNOG-mapper	749413.E5DV55_9VIRU	NA	NA
UHGV-0100880_23	PHROG	phrog_264	major head protein	head and packaging
UHGV-0100880_23	eggNOG-mapper	755164.D6PSX7_9CAUD	NA	NA
UHGV-0100880_23	Pfam	PF09950	NA	DUF2184
UHGV-0100880_24	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0100880_24	eggNOG-mapper	1321779.HMPREF1984_00105	NA	NA
UHGV-0100880_24	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0100880_25	KOfam	K09960	NA	NA
UHGV-0100880_25	PHROG	phrog_530	head maturation protease	head and packaging
UHGV-0100880_25	UniRef90	UniRef90_A0A523GRN8	NA	NA
UHGV-0100880_25	eggNOG-mapper	97137.C821_00051	NA	NA
UHGV-0100880_25	Pfam	PF09979	NA	DUF2213
UHGV-0100880_25	COG	COG3566	NA	NA
UHGV-0100880_25	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0100880_26	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0100880_26	UniRef90	UniRef90_H1PVR4	Phage_Mu_F domain-containing protein	NA
UHGV-0100880_26	eggNOG-mapper	1444711.CCJF01000003_gene25	cell adhesion	NA
UHGV-0100880_26	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0100880_26	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0100880_26	COG	COG2369	NA	NA
UHGV-0100880_26	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0100880_27	KOfam	K09961	NA	NA
UHGV-0100880_27	PHROG	phrog_146	portal protein	head and packaging
UHGV-0100880_27	UniRef90	UniRef90_H1PVR3	HI1409 family phage-associated protein	NA
UHGV-0100880_27	eggNOG-mapper	926561.KB900624_gene2632	TIGRFAM phage-associated protein, HI1409 family	NA
UHGV-0100880_27	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0100880_27	COG	COG3567	NA	NA
UHGV-0100880_27	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0100880_28	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0100880_28	UniRef90	UniRef90_H1PVR2	Terminase_6C domain-containing protein	NA
UHGV-0100880_28	eggNOG-mapper	526218.Sterm_2841	chromosome segregation	NA
UHGV-0100880_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0100880_28	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0100880_28	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0100880_28	COG	COG5362	Phage terminase large subunit	NA
UHGV-0100880_28	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0100880_29	UniRef90	UniRef90_UPI000E51D7B8	phage terminase small subunit-related protein	NA
UHGV-0100880_29	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0100880_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0100880_29	Structural annotation	PF10668	NA	NA
UHGV-0100880_31	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0100880_31	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0100880_31	UniRef90	UniRef90_A0A1G6LR83	Anti-repressor protein	NA
UHGV-0100880_31	eggNOG-mapper	536232.CLM_2573	Phage antirepressor protein	NA
UHGV-0100880_31	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0100880_31	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0100880_31	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0100880_31	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0100880_32	PHROG	phrog_824	NA	unknown function
UHGV-0100880_32	UniRef90	UniRef90_C6JQN6	VRR-NUC domain protein	NA
UHGV-0100880_32	eggNOG-mapper	469618.FVAG_00788	VRR_NUC	NA
UHGV-0100880_32	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-0100880_35	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0100880_35	eggNOG-mapper	1434319.W5RVC2_9CAUD	methyltransferase activity	NA
UHGV-0100880_36	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0100880_36	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0100880_36	UniRef90	UniRef90_UPI00164DB7B6	ATP-binding protein	NA
UHGV-0100880_36	eggNOG-mapper	1095747.HMPREF1049_2017	IstB-like ATP binding protein	NA
UHGV-0100880_36	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0100880_36	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0100880_36	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0100880_37	eggNOG-mapper	1094508.Tsac_0854	NA	NA
UHGV-0100880_38	PHROG	phrog_12848	NA	unknown function
UHGV-0100880_38	eggNOG-mapper	1511.CLOST_0065	NA	NA
UHGV-0100880_48	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0100880_48	UniRef90	UniRef90_H1PVM9	YqaJ domain-containing protein	NA
UHGV-0100880_48	eggNOG-mapper	1120985.AUMI01000019_gene2252	YqaJ viral recombinase family protein	NA
UHGV-0100880_48	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0100880_48	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0100880_48	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0100880_48	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0100880_49	PHROG	phrog_674	NA	unknown function
UHGV-0100880_49	UniRef90	UniRef90_UPI001B8A9365	NA	NA
UHGV-0100880_49	eggNOG-mapper	318464.IO99_00465	NA	NA
UHGV-0100880_49	Pfam	PF07083	NA	DUF1351
UHGV-0100880_49	Structural annotation	PF07083	NA	NA
UHGV-0100880_50	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0100880_50	UniRef90	UniRef90_H1PVM7	Phage recombination protein Bet	NA
UHGV-0100880_50	eggNOG-mapper	526218.Sterm_1235	Phage recombination protein Bet	NA
UHGV-0100880_50	Pfam	PF03837	RecT family	RecT
UHGV-0100880_50	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0100880_50	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0100880_50	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0100880_51	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0100880_51	PHROG	phrog_9562	NA	unknown function
UHGV-0100880_51	UniRef90	UniRef90_UPI001031ED10	pentapeptide repeat-containing protein	NA
UHGV-0100880_51	eggNOG-mapper	1408823.AXUS01000011_gene2119	Pentapeptide repeat protein	NA
UHGV-0100880_51	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0100880_51	Pfam	PF19062	NA	DUF5758
UHGV-0100880_51	COG	COG1357	NA	NA
UHGV-0100880_51	Structural annotation	PF19062, PF13599	NA	NA
UHGV-0100880_52	PHROG	phrog_398	NA	unknown function
UHGV-0100880_52	UniRef90	UniRef90_UPI001B8AE545	putative HNHc nuclease	NA
UHGV-0100880_52	eggNOG-mapper	596323.HMPREF0554_0844	Putative HNHc nuclease	NA
UHGV-0100880_52	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0100880_52	Structural annotation	PF16784	NA	NA
UHGV-0100880_54	PHROG	phrog_1672	NA	unknown function
UHGV-0100880_55	PHROG	phrog_989	NA	unknown function
UHGV-0100880_55	UniRef90	UniRef90_A0A3P1V3S8	Transcriptional regulator	NA
UHGV-0100880_56	KOfam	K14059	int; integrase	NA
UHGV-0100880_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0100880_56	UniRef90	UniRef90_X8GV39	Site-specific recombinase, phage integrase family	NA
UHGV-0100880_56	eggNOG-mapper	469616.FMAG_01893	Belongs to the 'phage' integrase family	NA
UHGV-0100880_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0100880_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0100880_56	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0100880_57	UniRef90	UniRef90_UPI00042514AC	fimbria/pilus outer membrane usher protein	NA
UHGV-0100880_57	eggNOG-mapper	469618.FVAG_02734	usher protein	NA
UHGV-0100880_57	Pfam	PF09430	ER membrane protein complex subunit 7, beta-sandwich domain	EMC7_beta-sandw
UHGV-0100880_57	COG	COG3188	Outer membrane usher protein FimD/PapC	NA
UHGV-0100880_58	eggNOG-mapper	469618.FVAG_02735	NA	NA