UHGV-0100906

Genome information

Genome length 40,976 bps

CDS count 49

Completeness 95.21% (high-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100906
vOTU ID	vOTU-014189
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_234352
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.21% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.1
Jumbo phage	No

Genome content
Genome length	40,976 bps
GC content	60.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	95.08%
Average CDS length	797.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100906_1	PHROG	phrog_22978	NA	unknown function
UHGV-0100906_1	UniRef90	UniRef90_A0A3D4D8G0	PBECR5 domain-containing protein	NA
UHGV-0100906_1	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-0100906_1	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0100906_2	eggNOG-mapper	1519439.JPJG01000060_gene1904	NA	NA
UHGV-0100906_3	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0100906_3	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-0100906_3	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0100906_5	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0100906_5	UniRef90	UniRef90_U2SWT4	Peptidase S74 domain-containing protein	NA
UHGV-0100906_5	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-0100906_5	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0100906_5	Structural annotation	PF07902, NF041249	NA	NA
UHGV-0100906_6	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0100906_6	PHROG	phrog_670	endolysin	lysis
UHGV-0100906_6	UniRef90	UniRef90_A0A352RPM1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0100906_6	eggNOG-mapper	1519439.JPJG01000060_gene1899	Ami_2	NA
UHGV-0100906_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0100906_6	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0100906_6	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0100906_7	PHROG	phrog_13256	NA	unknown function
UHGV-0100906_7	eggNOG-mapper	1519439.JPJG01000060_gene1898	NA	NA
UHGV-0100906_9	PHROG	phrog_9428	NA	unknown function
UHGV-0100906_9	UniRef90	UniRef90_A0A6I2RCP8	Serine/threonine protein kinase	NA
UHGV-0100906_9	eggNOG-mapper	1519439.JPJG01000059_gene1948	NA	NA
UHGV-0100906_10	PHROG	phrog_27545	NA	unknown function
UHGV-0100906_10	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-0100906_10	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0100906_10	Structural annotation	PF16170	NA	NA
UHGV-0100906_14	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0100906_14	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0100906_14	UniRef90	UniRef90_UPI00068BE71D	collagen-like protein	NA
UHGV-0100906_14	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0100906_14	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0100906_14	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0100906_14	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0100906_15	PHROG	phrog_12105	NA	unknown function
UHGV-0100906_15	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0100906_16	PHROG	phrog_371	major head protein	head and packaging
UHGV-0100906_16	UniRef90	UniRef90_R6TFU9	Mu-like_gpT domain-containing protein	NA
UHGV-0100906_16	eggNOG-mapper	1519439.JPJG01000060_gene1890	NA	NA
UHGV-0100906_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0100906_17	PHROG	phrog_24113	NA	unknown function
UHGV-0100906_17	eggNOG-mapper	1519439.JPJG01000060_gene1889	NA	NA
UHGV-0100906_17	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0100906_18	PHROG	phrog_35275	NA	unknown function
UHGV-0100906_18	eggNOG-mapper	1519439.JPJG01000060_gene1888	NA	NA
UHGV-0100906_19	PHROG	phrog_30605	NA	unknown function
UHGV-0100906_20	PHROG	phrog_156	portal protein	head and packaging
UHGV-0100906_20	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-0100906_20	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0100906_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0100906_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0100906_21	UniRef90	UniRef90_A0A3D4D7N6	PBSX family phage terminase large subunit	NA
UHGV-0100906_21	eggNOG-mapper	1519439.JPJG01000060_gene1885	phage Terminase large subunit	NA
UHGV-0100906_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0100906_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0100906_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0100906_21	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0100906_22	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0100906_22	eggNOG-mapper	1519439.JPJG01000060_gene1884	DNA-packaging protein gp3	NA
UHGV-0100906_22	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0100906_22	Structural annotation	PF16677	NA	NA
UHGV-0100906_23	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0100906_23	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0100906_23	eggNOG-mapper	693746.OBV_25240	NA	NA
UHGV-0100906_23	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0100906_24	eggNOG-mapper	1519439.JPJG01000060_gene1882	NA	NA
UHGV-0100906_26	PHROG	phrog_9467	NA	unknown function
UHGV-0100906_26	UniRef90	UniRef90_UPI0015B3EAA7	Gp49 family protein	NA
UHGV-0100906_26	eggNOG-mapper	1519439.JPJG01000060_gene1880	NA	NA
UHGV-0100906_26	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0100906_26	dbAPIS	APIS043	NA	NA
UHGV-0100906_26	Structural annotation	PF13876, PF14359, COG3613	NA	NA
UHGV-0100906_29	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0100906_31	PHROG	phrog_38832	NA	unknown function
UHGV-0100906_31	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0100906_33	Structural annotation	PF08271	NA	NA
UHGV-0100906_35	PHROG	phrog_27610	NA	unknown function
UHGV-0100906_36	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0100906_36	UniRef90	UniRef90_UPI000AAF359D	SAM-dependent DNA methyltransferase	NA
UHGV-0100906_36	eggNOG-mapper	1519439.JPJG01000060_gene1874	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0100906_36	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0100906_36	Structural annotation	PF05869, MF_01872, NF000058, COG4123	NA	NA
UHGV-0100906_37	PHROG	phrog_3136	NA	unknown function
UHGV-0100906_37	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0100906_37	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0100906_37	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0100906_38	Structural annotation	PF08207	NA	NA
UHGV-0100906_39	PHROG	phrog_15609	NA	unknown function
UHGV-0100906_39	UniRef90	UniRef90_UPI001C102D5E	NA	NA
UHGV-0100906_39	eggNOG-mapper	693746.OBV_24000	NA	NA
UHGV-0100906_39	Pfam	PF11300	NA	DUF3102
UHGV-0100906_39	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0100906_39	Structural annotation	PF11300, PF15591, PF07321, NF038070, NF008636, COG4568	NA	NA
UHGV-0100906_40	PHROG	phrog_8470	NA	unknown function
UHGV-0100906_40	UniRef90	UniRef90_UPI0019580896	PcfJ domain-containing protein	NA
UHGV-0100906_40	eggNOG-mapper	1226322.HMPREF1545_00100	PcfJ-like protein	NA
UHGV-0100906_40	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0100906_40	Structural annotation	PF14284	NA	NA
UHGV-0100906_41	PHROG	phrog_36399	NA	unknown function
UHGV-0100906_41	eggNOG-mapper	1226322.HMPREF1545_00099	NA	NA
UHGV-0100906_43	Structural annotation	PF09228	NA	NA
UHGV-0100906_45	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-0100906_45	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0100906_47	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0100906_47	UniRef90	UniRef90_A0A1Q6JHG6	Transcriptional regulator	NA
UHGV-0100906_47	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-0100906_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100906_47	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0100906_48	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0100906_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0100906_48	UniRef90	UniRef90_A0A3D4D7M3	HTH cro/C1-type domain-containing protein	NA
UHGV-0100906_48	eggNOG-mapper	1449126.JQKL01000032_gene1256	Helix-turn-helix XRE-family like proteins	NA
UHGV-0100906_48	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0100906_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0100906_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0100906_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0100906_49	KOfam	K14059	int; integrase	NA
UHGV-0100906_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0100906_49	UniRef90	UniRef90_A0A3D4D8C4	Integrase	NA
UHGV-0100906_49	eggNOG-mapper	742738.HMPREF9460_00840	Belongs to the 'phage' integrase family	NA
UHGV-0100906_49	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0100906_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0100906_49	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0100906_49	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA