UHGV-0100954

Genome information

Genome length 14,548 bps

CDS count 24

Completeness 50.19% (medium-quality)

geNomad score 0.9736

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100954
vOTU ID	vOTU-039260
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_219547
BioSample	SAMEA3541552
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	50.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9736
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.11
Jumbo phage	No

Genome content
Genome length	14,548 bps
GC content	36.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	88.13%
Average CDS length	537.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100954_3	UniRef90	UniRef90_A0A1B1YJJ5	Ubiquinone biosynthesis protein COQ7	NA
UHGV-0100954_3	eggNOG-mapper	1121335.Clst_0949	Ubiquinone biosynthesis protein COQ7	NA
UHGV-0100954_3	Pfam	PF03232	Ubiquinone biosynthesis protein COQ7	COQ7
UHGV-0100954_3	COG	COG1633	Rubrerythrin, includes spore coat protein YhjR	NA
UHGV-0100954_7	PHROG	phrog_2150	terminase	head and packaging
UHGV-0100954_7	UniRef90	UniRef90_A0A843GP34	Phage DNA encapsidation protein	NA
UHGV-0100954_7	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0100954_7	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0100954_7	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0100954_8	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0100954_8	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0100954_8	UniRef90	UniRef90_A0A355RJ67	DNA-directed DNA polymerase	NA
UHGV-0100954_8	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0100954_8	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0100954_8	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0100954_9	Structural annotation	PF05435	NA	NA
UHGV-0100954_10	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0100954_10	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0100954_10	Structural annotation	PF17427	NA	NA
UHGV-0100954_11	PHROG	phrog_6370	dsDNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0100954_11	Structural annotation	PF17548	NA	NA
UHGV-0100954_17	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0100954_17	PHROG	phrog_894	endolysin	lysis
UHGV-0100954_17	UniRef90	UniRef90_UPI001062B92E	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0100954_17	eggNOG-mapper	1347087.CBYO010000007_gene1005	Peptidase M15	NA
UHGV-0100954_17	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0100954_17	COG	COG3108	NA	NA
UHGV-0100954_19	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0100954_19	UniRef90	UniRef90_A0A843GX77	Ig-like domain-containing protein	NA
UHGV-0100954_19	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0100954_19	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0100954_19	Structural annotation	PF21703, MF_04119, NF033394, COG4653	NA	NA
UHGV-0100954_20	PHROG	phrog_2248	tail protein	tail
UHGV-0100954_20	UniRef90	UniRef90_A0A843GNE5	Caud_tail_N domain-containing protein	NA
UHGV-0100954_20	eggNOG-mapper	1128071.G9J3H9_9CAUD	Peptidase family M23	NA
UHGV-0100954_20	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0100954_20	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0100954_20	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0100954_21	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0100954_21	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0100954_21	UniRef90	UniRef90_A0A7C6M9G4	M23 family metallopeptidase (Fragment)	NA
UHGV-0100954_21	eggNOG-mapper	931626.Awo_c11530	sporulation resulting in formation of a cellular spore	NA
UHGV-0100954_21	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0100954_21	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0100954_22	PHROG	phrog_2038	upper collar connector	connector
UHGV-0100954_22	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0100954_22	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0100954_22	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0100954_23	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0100954_23	UniRef90	UniRef90_A0A7S5RIY2	Lower collar connector protein	NA
UHGV-0100954_23	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0100954_24	PHROG	phrog_17212	pre-neck appendage protein	connector