UHGV-0100981

Genome information

Genome length 43,486 bps

CDS count 54

Completeness 99.90% (high-quality)

geNomad score 0.9714

Prediction confidence Confident

Genome information
Genome ID	UHGV-0100981
vOTU ID	vOTU-014778
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_219460
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9714
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.65
Jumbo phage	No

Genome content
Genome length	43,486 bps
GC content	54.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.24%
Average CDS length	740.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0100981_1	UniRef90	UniRef90_R6IC12	Antitoxin	NA
UHGV-0100981_1	eggNOG-mapper	1408437.JNJN01000061_gene361	Antitoxin Phd_YefM, type II toxin-antitoxin system	NA
UHGV-0100981_1	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0100981_1	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-0100981_1	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-0100981_2	KOfam	K19092	parE1_3_4; toxin ParE1/3/4	NA
UHGV-0100981_2	PHROG	phrog_2455	NA	unknown function
UHGV-0100981_2	UniRef90	UniRef90_R6I1M6	Toxin-antitoxin system toxin component RelE family	NA
UHGV-0100981_2	eggNOG-mapper	1408437.JNJN01000061_gene362	PFAM plasmid stabilization system	NA
UHGV-0100981_2	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0100981_2	COG	COG3668	Plasmid stabilization system protein ParE	NA
UHGV-0100981_2	Structural annotation	PF05016, TIGR00053, COG3668	NA	NA
UHGV-0100981_4	eggNOG-mapper	715451.ambt_14505	NA	NA
UHGV-0100981_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0100981_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0100981_6	UniRef90	UniRef90_R6I1M1	DNA-binding helix-turn-helix protein	NA
UHGV-0100981_6	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0100981_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0100981_6	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0100981_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0100981_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0100981_10	PHROG	phrog_26314	NA	unknown function
UHGV-0100981_11	PHROG	phrog_7566	NA	unknown function
UHGV-0100981_11	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0100981_11	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0100981_14	UniRef90	UniRef90_R6IFA4	Hydrolase_2 domain-containing protein	NA
UHGV-0100981_14	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0100981_14	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0100981_18	PHROG	phrog_36399	NA	unknown function
UHGV-0100981_18	eggNOG-mapper	1007096.BAGW01000031_gene116	NA	NA
UHGV-0100981_19	PHROG	phrog_8470	NA	unknown function
UHGV-0100981_19	UniRef90	UniRef90_UPI0019580896	PcfJ domain-containing protein	NA
UHGV-0100981_19	eggNOG-mapper	1226322.HMPREF1545_00100	PcfJ-like protein	NA
UHGV-0100981_19	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0100981_19	Structural annotation	PF14284	NA	NA
UHGV-0100981_20	PHROG	phrog_15609	NA	unknown function
UHGV-0100981_20	UniRef90	UniRef90_UPI001C12751D	NA	NA
UHGV-0100981_20	eggNOG-mapper	1378168.N510_01841	NA	NA
UHGV-0100981_20	Pfam	PF11300	NA	DUF3102
UHGV-0100981_20	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0100981_20	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0100981_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0100981_29	eggNOG-mapper	693746.OBV_25240	NA	NA
UHGV-0100981_29	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0100981_30	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0100981_30	UniRef90	UniRef90_UPI000FDB1B0C	DNA-packaging protein	NA
UHGV-0100981_30	eggNOG-mapper	1226322.HMPREF1545_03842	DNA-packaging protein gp3	NA
UHGV-0100981_30	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0100981_30	Structural annotation	PF16677	NA	NA
UHGV-0100981_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0100981_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0100981_31	UniRef90	UniRef90_H7BW36	Terminase_3 domain-containing protein	NA
UHGV-0100981_31	eggNOG-mapper	1226322.HMPREF1545_03843	phage Terminase large subunit	NA
UHGV-0100981_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0100981_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0100981_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0100981_31	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0100981_32	PHROG	phrog_156	portal protein	head and packaging
UHGV-0100981_32	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-0100981_32	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0100981_33	PHROG	phrog_30605	NA	unknown function
UHGV-0100981_34	PHROG	phrog_35275	NA	unknown function
UHGV-0100981_34	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-0100981_35	PHROG	phrog_24113	NA	unknown function
UHGV-0100981_35	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-0100981_35	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0100981_36	PHROG	phrog_371	major head protein	head and packaging
UHGV-0100981_36	UniRef90	UniRef90_A0A8F2JBL2	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0100981_36	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0100981_36	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0100981_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0100981_38	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-0100981_38	PHROG	phrog_12105	NA	unknown function
UHGV-0100981_38	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0100981_39	PHROG	phrog_37900	NA	unknown function
UHGV-0100981_39	UniRef90	UniRef90_UPI00110725F0	NA	NA
UHGV-0100981_39	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0100981_39	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0100981_39	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0100981_39	Structural annotation	PF19190, MF_04116, NF010681, COG3291	NA	NA
UHGV-0100981_41	UniRef90	UniRef90_R6I1X1	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	NA
UHGV-0100981_41	eggNOG-mapper	552398.HMPREF0866_01159	NA	NA
UHGV-0100981_42	PHROG	phrog_774	NA	unknown function
UHGV-0100981_42	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0100981_43	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0100981_43	PHROG	phrog_7698	endolysin	lysis
UHGV-0100981_43	UniRef90	UniRef90_D6QWN4	PlyM20	NA
UHGV-0100981_43	eggNOG-mapper	1203606.HMPREF1526_01931	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0100981_43	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0100981_43	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0100981_43	Structural annotation	PF01510, MF_04111, NF008758	NA	NA
UHGV-0100981_44	PHROG	phrog_199	holin	lysis
UHGV-0100981_44	UniRef90	UniRef90_R5AT18	Toxin secretion/phage lysis holin	NA
UHGV-0100981_44	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-0100981_44	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0100981_44	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0100981_44	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0100981_44	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0100981_45	PHROG	phrog_1899	NA	unknown function
UHGV-0100981_45	UniRef90	UniRef90_UPI00110693DB	gp58-like family protein	NA
UHGV-0100981_45	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-0100981_45	Pfam	PF07902	gp58-like protein	Gp58
UHGV-0100981_45	Structural annotation	PF07902, NF041249	NA	NA
UHGV-0100981_46	Structural annotation	PF07761	NA	NA
UHGV-0100981_47	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0100981_47	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-0100981_47	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0100981_48	eggNOG-mapper	1226322.HMPREF1545_00786	NA	NA
UHGV-0100981_49	PHROG	phrog_13543	NA	unknown function
UHGV-0100981_49	UniRef90	UniRef90_A0A2V2F688	LPD23 domain-containing protein	NA
UHGV-0100981_49	eggNOG-mapper	1232449.BAHV02000016_gene1805	NA	NA
UHGV-0100981_49	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-0100981_49	Pfam	PF20573	NA	DUF6782
UHGV-0100981_49	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-0100981_50	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0100981_50	PHROG	phrog_95	integrase	integration and excision
UHGV-0100981_50	UniRef90	UniRef90_A0A3D4MTS8	Recombinase family protein	NA
UHGV-0100981_50	eggNOG-mapper	397290.C810_02810	Recombinase	NA
UHGV-0100981_50	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0100981_50	Pfam	PF07508	Recombinase	Recombinase
UHGV-0100981_50	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0100981_50	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0100981_50	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-0100981_51	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0100981_51	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0100981_51	UniRef90	UniRef90_A0A3D4MWH4	mRNA interferase	NA
UHGV-0100981_51	eggNOG-mapper	1121115.AXVN01000009_gene1509	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0100981_51	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0100981_51	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0100981_51	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0100981_52	UniRef90	UniRef90_A0A3D4MUP0	RNA polymerase subunit sigma-70	NA
UHGV-0100981_52	eggNOG-mapper	1408437.JNJN01000067_gene972	NA	NA
UHGV-0100981_52	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-0100981_52	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0100981_53	UniRef90	UniRef90_A0A3D6BNJ9	Conjugal transfer protein	NA
UHGV-0100981_53	eggNOG-mapper	445972.ANACOL_03230	Cysteine-rich KTR	NA
UHGV-0100981_53	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0100981_53	Structural annotation	PF14205, NF041070	NA	NA