UHGV-0101010

Genome information

vOTU vOTU-042063

Genome length 36,415 bps

CDS count 62

Completeness 79.10% (medium-quality)

geNomad score 0.9744

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101010
vOTU ID	vOTU-042063
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_203484
BioSample	SAMEA3449316
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9744
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	81.61
Jumbo phage	No

Genome content
Genome length	36,415 bps
GC content	45.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	92.06%
Average CDS length	546.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101010_2	eggNOG-mapper	1220589.CD32_01770	NA	NA
UHGV-0101010_2	AcrCatalog	cluster_38765	NA	NA
UHGV-0101010_2	Structural annotation	PF15931, NF001462, COG2974	NA	NA
UHGV-0101010_5	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0101010_5	PHROG	phrog_7	endolysin	lysis
UHGV-0101010_5	UniRef90	UniRef90_A0A3R6HYB3	Lysozyme	NA
UHGV-0101010_5	eggNOG-mapper	693746.OBV_20240	Phage lysozyme	NA
UHGV-0101010_5	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0101010_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0101010_5	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0101010_5	HAMAP	MF_04110	Endolysin	NA
UHGV-0101010_5	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-0101010_6	PHROG	phrog_199	holin	lysis
UHGV-0101010_6	UniRef90	UniRef90_UPI001C014087	phage holin family protein	NA
UHGV-0101010_6	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-0101010_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0101010_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0101010_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0101010_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0101010_8	PHROG	phrog_134	NA	unknown function
UHGV-0101010_8	UniRef90	UniRef90_UPI001C00B7A3	XkdX family protein	NA
UHGV-0101010_8	eggNOG-mapper	1298920.KI911353_gene4834	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0101010_8	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0101010_8	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0101010_11	PHROG	phrog_521	tail protein	tail
UHGV-0101010_11	UniRef90	UniRef90_UPI001C0121A6	NA	NA
UHGV-0101010_11	eggNOG-mapper	1235790.C805_00608	NA	NA
UHGV-0101010_11	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0101010_11	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0101010_11	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0101010_12	PHROG	phrog_6	baseplate protein	tail
UHGV-0101010_12	UniRef90	UniRef90_UPI001C03463F	baseplate J/gp47 family protein	NA
UHGV-0101010_12	eggNOG-mapper	1449050.JNLE01000005_gene4831	Baseplate J-like protein	NA
UHGV-0101010_12	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0101010_12	COG	COG3299	NA	NA
UHGV-0101010_12	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0101010_13	PHROG	phrog_120	baseplate protein	tail
UHGV-0101010_13	UniRef90	UniRef90_UPI001C00EA4C	NA	NA
UHGV-0101010_13	eggNOG-mapper	397288.C806_00119	NA	NA
UHGV-0101010_13	Pfam	PF10934	NA	DUF2634
UHGV-0101010_13	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0101010_13	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0101010_14	PHROG	phrog_579	NA	unknown function
UHGV-0101010_14	UniRef90	UniRef90_UPI001C01DBFE	NA	NA
UHGV-0101010_14	eggNOG-mapper	1195236.CTER_3991	NA	NA
UHGV-0101010_14	Pfam	PF10844	NA	DUF2577
UHGV-0101010_14	Structural annotation	PF10844	NA	NA
UHGV-0101010_15	PHROG	phrog_400	tail protein	tail
UHGV-0101010_15	UniRef90	UniRef90_UPI001C018478	hydrolase	NA
UHGV-0101010_15	eggNOG-mapper	742740.HMPREF9474_02342	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0101010_15	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0101010_15	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0101010_16	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0101010_16	PHROG	phrog_380	endolysin	lysis
UHGV-0101010_16	UniRef90	UniRef90_UPI001C0237CC	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0101010_16	eggNOG-mapper	742740.HMPREF9474_02343	Lysin motif	NA
UHGV-0101010_16	Pfam	PF01476	LysM domain	LysM
UHGV-0101010_16	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0101010_16	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0101010_17	UniRef90	UniRef90_A0A7U9SAW8	Peptidase_M78 domain-containing protein	NA
UHGV-0101010_17	eggNOG-mapper	476272.RUMHYD_02879	ORF6N domain	NA
UHGV-0101010_17	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0101010_17	Structural annotation	PF13058, COG2856	NA	NA
UHGV-0101010_19	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0101010_19	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0101010_19	UniRef90	UniRef90_A0A415TWU5	AntA domain-containing protein	NA
UHGV-0101010_19	eggNOG-mapper	1235802.C823_01054	AntA/AntB antirepressor	NA
UHGV-0101010_19	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0101010_19	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0101010_19	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0101010_20	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0101010_20	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0101010_20	UniRef90	UniRef90_UPI001C01CEA7	helix-turn-helix transcriptional regulator	NA
UHGV-0101010_20	eggNOG-mapper	1236504.HMPREF2132_02145	sequence-specific DNA binding	NA
UHGV-0101010_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101010_20	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0101010_20	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0101010_21	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0101010_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101010_21	UniRef90	UniRef90_UPI001C0389DE	helix-turn-helix domain-containing protein	NA
UHGV-0101010_21	eggNOG-mapper	97138.C820_02581	sequence-specific DNA binding	NA
UHGV-0101010_21	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0101010_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101010_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0101010_21	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0101010_22	PHROG	phrog_17658	NA	unknown function
UHGV-0101010_22	Structural annotation	PF18116	NA	NA
UHGV-0101010_23	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0101010_23	UniRef90	UniRef90_UPI001C018F6C	tape measure protein	NA
UHGV-0101010_23	eggNOG-mapper	1203606.HMPREF1526_00335	tape measure	NA
UHGV-0101010_23	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0101010_23	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0101010_23	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0101010_23	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0101010_24	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0101010_24	UniRef90	UniRef90_A9KPN9	XkdN-like protein	NA
UHGV-0101010_24	eggNOG-mapper	357809.Cphy_2956	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0101010_24	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0101010_24	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0101010_25	PHROG	phrog_365	tail protein	tail
UHGV-0101010_25	UniRef90	UniRef90_UPI001C02900F	phage tail tube protein	NA
UHGV-0101010_25	eggNOG-mapper	1123511.KB905868_gene174	Phage tail tube protein	NA
UHGV-0101010_25	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0101010_25	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0101010_26	PHROG	phrog_279	tail sheath	tail
UHGV-0101010_26	UniRef90	UniRef90_UPI001C011AEF	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0101010_26	eggNOG-mapper	742740.HMPREF9474_02347	Phage tail sheath C-terminal domain	NA
UHGV-0101010_26	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0101010_26	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0101010_26	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0101010_26	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0101010_27	PHROG	phrog_966	NA	unknown function
UHGV-0101010_27	eggNOG-mapper	642492.Clole_2751	NA	NA
UHGV-0101010_28	PHROG	phrog_525	NA	unknown function
UHGV-0101010_28	UniRef90	UniRef90_R6PDQ8	NA	NA
UHGV-0101010_28	eggNOG-mapper	357809.Cphy_2960	NA	NA
UHGV-0101010_28	Pfam	PF20765	NA	DUF6838
UHGV-0101010_28	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0101010_29	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0101010_29	UniRef90	UniRef90_UPI001C020724	HK97 gp10 family phage protein	NA
UHGV-0101010_29	eggNOG-mapper	357809.Cphy_2961	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0101010_29	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0101010_29	Structural annotation	PF04883, COG5005	NA	NA
UHGV-0101010_30	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0101010_30	UniRef90	UniRef90_F2JK38	NA	NA
UHGV-0101010_30	eggNOG-mapper	642492.Clole_2754	NA	NA
UHGV-0101010_30	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0101010_31	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0101010_31	UniRef90	UniRef90_UPI001C012CC6	phage head-tail connector protein	NA
UHGV-0101010_31	eggNOG-mapper	1123511.KB905868_gene180	NA	NA
UHGV-0101010_31	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0101010_31	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0101010_32	PHROG	phrog_247	major head protein	head and packaging
UHGV-0101010_32	UniRef90	UniRef90_A0A1Q6SQL3	Coat protein	NA
UHGV-0101010_32	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-0101010_32	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0101010_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0101010_33	UniRef90	UniRef90_UPI001C011948	phage scaffolding protein	NA
UHGV-0101010_33	eggNOG-mapper	1042156.CXIVA_00720	Phage minor structural protein GP20	NA
UHGV-0101010_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0101010_33	Structural annotation	PF06810	NA	NA
UHGV-0101010_35	PHROG	phrog_30750	NA	unknown function
UHGV-0101010_36	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0101010_36	UniRef90	UniRef90_UPI001C00E771	minor capsid protein	NA
UHGV-0101010_36	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0101010_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0101010_36	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0101010_36	COG	COG2369	NA	NA
UHGV-0101010_36	Structural annotation	PF04233, PF04002, TIGR01641, COG2369	NA	NA
UHGV-0101010_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-0101010_37	UniRef90	UniRef90_UPI001C01A84E	phage portal protein	NA
UHGV-0101010_37	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0101010_37	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0101010_37	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0101010_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0101010_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0101010_38	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0101010_38	UniRef90	UniRef90_A0A6L6L9A4	PBSX family phage terminase large subunit	NA
UHGV-0101010_38	eggNOG-mapper	1395513.P343_07995	Phage terminase large subunit	NA
UHGV-0101010_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0101010_38	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0101010_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0101010_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0101010_38	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0101010_39	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0101010_39	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0101010_39	UniRef90	UniRef90_UPI001C01B209	terminase small subunit	NA
UHGV-0101010_39	eggNOG-mapper	642492.Clole_2766	Terminase Small Subunit	NA
UHGV-0101010_39	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0101010_39	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0101010_39	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0101010_39	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0101010_40	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0101010_40	UniRef90	UniRef90_UPI001C016A9D	RNA polymerase subunit sigma-70	NA
UHGV-0101010_40	eggNOG-mapper	1235798.C817_03486	NA	NA
UHGV-0101010_40	Structural annotation	PF02996	NA	NA
UHGV-0101010_42	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-0101010_48	PHROG	phrog_15198	NA	unknown function
UHGV-0101010_48	UniRef90	UniRef90_UPI001D064D4E	NA	NA
UHGV-0101010_48	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-0101010_48	Pfam	PF04448	NA	DUF551
UHGV-0101010_48	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0101010_51	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0101010_51	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0101010_51	UniRef90	UniRef90_UPI000E81B795	ATP-binding protein	NA
UHGV-0101010_51	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0101010_51	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0101010_51	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0101010_51	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0101010_52	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0101010_52	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0101010_52	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0101010_52	Structural annotation	PF07106, PF07261, MF_01177, TIGR01714, TIGR01446, COG5529	NA	NA
UHGV-0101010_53	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0101010_53	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0101010_53	UniRef90	UniRef90_A0A412FH46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0101010_53	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0101010_53	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0101010_53	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0101010_53	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0101010_55	PHROG	phrog_7566	NA	unknown function
UHGV-0101010_55	UniRef90	UniRef90_UPI001C0181E7	phosphoenolpyruvate carboxykinase	NA
UHGV-0101010_55	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0101010_56	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0101010_56	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0101010_56	eggNOG-mapper	1410650.JHWL01000003_gene2850	NA	NA
UHGV-0101010_56	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0101010_57	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0101010_57	UniRef90	UniRef90_UPI001C031D02	ERF family protein	NA
UHGV-0101010_57	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0101010_57	Pfam	PF04404	ERF superfamily	ERF
UHGV-0101010_57	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0101010_57	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0101010_58	PHROG	phrog_674	NA	unknown function
UHGV-0101010_58	UniRef90	UniRef90_UPI001C01FE50	NA	NA
UHGV-0101010_58	eggNOG-mapper	658655.HMPREF0988_02587	NA	NA
UHGV-0101010_58	Pfam	PF07083	NA	DUF1351
UHGV-0101010_58	Structural annotation	PF07083	NA	NA
UHGV-0101010_62	Structural annotation	PF11127	NA	NA