UHGV-0101052

Genome information

Genome length 43,545 bps

CDS count 68

Completeness 96.57% (high-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101052
vOTU ID	vOTU-012652
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_216203
BioSample	SAMEA3541533
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.57% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.47
Jumbo phage	No

Genome content
Genome length	43,545 bps
GC content	41.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	91.02%
Average CDS length	587.91 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101052_2	KOfam	K03631	recN; DNA repair protein RecN (Recombination protein N)	NA
UHGV-0101052_2	PHROG	phrog_14451	NA	unknown function
UHGV-0101052_2	UniRef90	UniRef90_A0A644ZJ09	DNA repair protein RecN	NA
UHGV-0101052_2	eggNOG-mapper	657322.FPR_30480	May be involved in recombinational repair of damaged DNA	NA
UHGV-0101052_2	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0101052_3	PHROG	phrog_7964	NA	unknown function
UHGV-0101052_3	UniRef90	UniRef90_A0A4S2Q3Z3	Polymer-forming cytoskeletal protein (Fragment)	NA
UHGV-0101052_3	eggNOG-mapper	1280692.AUJL01000011_gene3221	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0101052_3	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0101052_4	Structural annotation	PF13601, MF_01819, NF038251, COG1846	NA	NA
UHGV-0101052_6	UniRef90	UniRef90_A0A3R6RM60	XRE family transcriptional regulator	NA
UHGV-0101052_6	eggNOG-mapper	1298920.KI911353_gene527	NA	NA
UHGV-0101052_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0101052_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0101052_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101052_7	UniRef90	UniRef90_A0A8J8SBE0	Helix-turn-helix transcriptional regulator	NA
UHGV-0101052_7	eggNOG-mapper	706434.HMPREF9429_00594	Helix-turn-helix XRE-family like proteins	NA
UHGV-0101052_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101052_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0101052_9	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0101052_9	PHROG	phrog_8810	NA	unknown function
UHGV-0101052_9	UniRef90	UniRef90_UPI001D0E4226	LytTR family DNA-binding domain-containing protein	NA
UHGV-0101052_9	eggNOG-mapper	556261.HMPREF0240_03082	response regulator	NA
UHGV-0101052_9	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0101052_9	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0101052_9	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0101052_9	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0101052_10	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0101052_10	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0101052_10	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0101052_10	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0101052_10	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0101052_11	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0101052_11	PHROG	phrog_95	integrase	integration and excision
UHGV-0101052_11	UniRef90	UniRef90_A0A412ELC2	Recombinase family protein	NA
UHGV-0101052_11	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0101052_11	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0101052_11	Pfam	PF07508	Recombinase	Recombinase
UHGV-0101052_11	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0101052_11	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0101052_11	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0101052_12	KOfam	K07273	acm; lysozyme	NA
UHGV-0101052_12	PHROG	phrog_6745	endolysin	lysis
UHGV-0101052_12	UniRef90	UniRef90_A0A1C5RZF8	Autolytic lysozyme	NA
UHGV-0101052_12	eggNOG-mapper	1121115.AXVN01000006_gene2170	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0101052_12	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0101052_12	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0101052_12	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0101052_12	Structural annotation	PF01183, TIGR02594, TIGR04303, COG3757, COG3942	NA	NA
UHGV-0101052_13	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0101052_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0101052_13	UniRef90	UniRef90_UPI001D0E7AAB	tyrosine-type recombinase/integrase	NA
UHGV-0101052_13	eggNOG-mapper	397291.C804_01139	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0101052_13	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0101052_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0101052_13	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0101052_13	Structural annotation	PF00589, PF13495, MF_01808, NF001399, COG4974	NA	NA
UHGV-0101052_14	Structural annotation	PF07880	NA	NA
UHGV-0101052_15	PHROG	phrog_6616	tail protein	tail
UHGV-0101052_15	UniRef90	UniRef90_A0A395X7B3	Peptidase S74 domain-containing protein	NA
UHGV-0101052_15	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0101052_15	Structural annotation	PF05113, PF03921, PF13884, NF033848, COG3500	NA	NA
UHGV-0101052_16	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0101052_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0101052_17	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0101052_17	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0101052_17	COG	COG1511	NA	NA
UHGV-0101052_17	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0101052_18	PHROG	phrog_706	NA	unknown function
UHGV-0101052_18	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0101052_18	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0101052_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0101052_18	Structural annotation	PF06854	NA	NA
UHGV-0101052_19	PHROG	phrog_11299	NA	unknown function
UHGV-0101052_19	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0101052_19	Structural annotation	PF10666	NA	NA
UHGV-0101052_20	PHROG	phrog_3099	NA	unknown function
UHGV-0101052_20	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0101052_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0101052_21	PHROG	phrog_3266	tail completion	connector
UHGV-0101052_21	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0101052_21	Structural annotation	PF12691	NA	NA
UHGV-0101052_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0101052_22	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0101052_22	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0101052_22	Structural annotation	PF11114	NA	NA
UHGV-0101052_23	PHROG	phrog_3366	NA	unknown function
UHGV-0101052_23	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0101052_23	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0101052_24	PHROG	phrog_1129	holin	lysis
UHGV-0101052_24	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0101052_24	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0101052_24	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0101052_24	Structural annotation	PF06946	NA	NA
UHGV-0101052_26	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0101052_26	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0101052_27	PHROG	phrog_544	major head protein	head and packaging
UHGV-0101052_27	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0101052_27	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0101052_27	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0101052_27	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0101052_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0101052_28	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0101052_28	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0101052_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0101052_29	PHROG	phrog_28802	NA	unknown function
UHGV-0101052_29	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0101052_30	PHROG	phrog_20016	NA	unknown function
UHGV-0101052_30	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0101052_30	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0101052_30	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0101052_31	PHROG	phrog_16490	NA	unknown function
UHGV-0101052_31	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0101052_32	PHROG	phrog_22984	NA	unknown function
UHGV-0101052_33	PHROG	phrog_21718	NA	unknown function
UHGV-0101052_33	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0101052_34	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0101052_34	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0101052_35	PHROG	phrog_3754	NA	unknown function
UHGV-0101052_35	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0101052_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0101052_36	UniRef90	UniRef90_A0A412EKN3	Phage capsid protein	NA
UHGV-0101052_36	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0101052_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0101052_36	COG	COG2369	NA	NA
UHGV-0101052_36	Structural annotation	PF06152	NA	NA
UHGV-0101052_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-0101052_37	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0101052_37	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0101052_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0101052_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0101052_39	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0101052_39	UniRef90	UniRef90_A0A1C6CDG5	Phage terminase, large subunit, PBSX family	NA
UHGV-0101052_39	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0101052_39	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0101052_39	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0101052_39	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0101052_39	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0101052_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0101052_39	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0101052_40	PHROG	phrog_33130	NA	unknown function
UHGV-0101052_40	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0101052_41	eggNOG-mapper	397290.C810_05184	NA	NA
UHGV-0101052_44	PHROG	phrog_8684	NA	unknown function
UHGV-0101052_44	UniRef90	UniRef90_UPI000E48CB3D	YopX family protein	NA
UHGV-0101052_44	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0101052_44	Pfam	PF09643	YopX protein	YopX
UHGV-0101052_44	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0101052_45	PHROG	phrog_20593	NA	unknown function
UHGV-0101052_45	AcrCatalog	cluster_27421	NA	NA
UHGV-0101052_46	Structural annotation	PF02701, TIGR03655, COG3677	NA	NA
UHGV-0101052_47	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0101052_47	AcrCatalog	cluster_11670	NA	NA
UHGV-0101052_50	PHROG	phrog_15198	NA	unknown function
UHGV-0101052_50	UniRef90	UniRef90_A0A395XB56	NA	NA
UHGV-0101052_50	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-0101052_50	Pfam	PF04448	NA	DUF551
UHGV-0101052_52	PHROG	phrog_4601	NA	unknown function
UHGV-0101052_54	Structural annotation	NF041197	NA	NA
UHGV-0101052_55	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-0101052_56	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0101052_56	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0101052_56	UniRef90	UniRef90_A0A6N2U143	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0101052_56	eggNOG-mapper	1499683.CCFF01000017_gene2594	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0101052_56	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0101052_56	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0101052_56	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0101052_56	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0101052_56	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0101052_57	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0101052_57	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0101052_57	UniRef90	UniRef90_UPI001D06D025	ATP-binding protein	NA
UHGV-0101052_57	eggNOG-mapper	397291.C804_01604	Bacterial dnaA protein	NA
UHGV-0101052_57	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0101052_57	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0101052_57	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0101052_58	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0101052_58	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0101052_58	eggNOG-mapper	97138.C820_00775	DnaD domain protein	NA
UHGV-0101052_58	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0101052_59	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0101052_59	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0101052_59	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0101052_60	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0101052_60	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0101052_61	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0101052_61	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0101052_61	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0101052_62	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101052_62	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0101052_62	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0101052_63	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0101052_63	UniRef90	UniRef90_C7GC36	Siphovirus Gp157	NA
UHGV-0101052_63	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0101052_63	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0101052_63	Structural annotation	PF05565	NA	NA
UHGV-0101052_65	Structural annotation	PF10922, TIGR03741	NA	NA
UHGV-0101052_66	AcrCatalog	cluster_17974	NA	NA
UHGV-0101052_68	PHROG	phrog_7964	NA	unknown function
UHGV-0101052_68	eggNOG-mapper	665950.HMPREF1025_02555	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0101052_68	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0101052_68	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0101052_68	Structural annotation	MF_01691, TIGR03532, COG2171	NA	NA