UHGV-0101258

Genome information

Genome length 39,292 bps

CDS count 72

Completeness 99.90% (high-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101258
vOTU ID	vOTU-066546
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_211201
BioSample	SAMEA3449355
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.35
Jumbo phage	No

Genome content
Genome length	39,292 bps
GC content	50.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	93.20%
Average CDS length	514.29 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101258_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0101258_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0101258_1	UniRef90	UniRef90_A0A1M6M277	Site-specific DNA recombinase	NA
UHGV-0101258_1	eggNOG-mapper	445972.ANACOL_03320	NA	NA
UHGV-0101258_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0101258_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0101258_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0101258_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0101258_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0101258_2	PHROG	phrog_16230	replication protein	DNA, RNA and nucleotide metabolism
UHGV-0101258_2	UniRef90	UniRef90_R5D8H2	Phage P1-related protein	NA
UHGV-0101258_2	eggNOG-mapper	1094508.Tsac_2407	NA	NA
UHGV-0101258_3	PHROG	phrog_3732	NA	unknown function
UHGV-0101258_3	UniRef90	UniRef90_A0A3A9HPK4	NA	NA
UHGV-0101258_3	eggNOG-mapper	211586.SO_4263	NA	NA
UHGV-0101258_3	Pfam	PF12686	NA	DUF3800
UHGV-0101258_3	Structural annotation	MF_00053, TIGR00729, COG1039	NA	NA
UHGV-0101258_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0101258_4	UniRef90	UniRef90_A0A3D4MZU0	HTH cro/C1-type domain-containing protein	NA
UHGV-0101258_4	eggNOG-mapper	626939.HMPREF9443_00161	Helix-turn-helix XRE-family like proteins	NA
UHGV-0101258_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101258_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0101258_4	Structural annotation	PF01381, MF_02017, NF041951, COG1396	NA	NA
UHGV-0101258_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0101258_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101258_5	UniRef90	UniRef90_A0A3D4MY28	XRE family transcriptional regulator	NA
UHGV-0101258_5	eggNOG-mapper	1120978.KB894087_gene408	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0101258_5	PADLOC	Control_protein_00002	control protein	RM
UHGV-0101258_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101258_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0101258_9	UniRef90	UniRef90_A0A6L9H2N1	XRE family transcriptional regulator	NA
UHGV-0101258_9	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0101258_9	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0101258_9	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0101258_11	Structural annotation	NF041588	NA	NA
UHGV-0101258_14	PHROG	phrog_4433	NA	unknown function
UHGV-0101258_14	UniRef90	UniRef90_A0A3S4IYA1	Gp53	NA
UHGV-0101258_14	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0101258_14	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0101258_16	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0101258_16	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-0101258_16	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0101258_16	Pfam	PF06378	NA	DUF1071
UHGV-0101258_16	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0101258_17	PHROG	phrog_1389	NA	unknown function
UHGV-0101258_17	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-0101258_17	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0101258_18	PHROG	phrog_7566	NA	unknown function
UHGV-0101258_18	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0101258_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0101258_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0101258_19	UniRef90	UniRef90_UPI001E2A5A6F	single-stranded DNA-binding protein	NA
UHGV-0101258_19	eggNOG-mapper	1235835.C814_01372	Single-stranded DNA-binding protein	NA
UHGV-0101258_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0101258_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0101258_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0101258_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0101258_19	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0101258_21	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0101258_21	UniRef90	UniRef90_UPI001241A3FA	phage replication protein	NA
UHGV-0101258_21	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0101258_21	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0101258_22	PHROG	phrog_9804	NA	unknown function
UHGV-0101258_22	UniRef90	UniRef90_UPI001E312ACC	replicative helicase loader/inhibitor	NA
UHGV-0101258_22	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0101258_22	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0101258_22	Structural annotation	PF11417	NA	NA
UHGV-0101258_23	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0101258_23	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0101258_23	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0101258_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0101258_24	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0101258_24	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0101258_24	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0101258_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0101258_24	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0101258_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0101258_25	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0101258_25	UniRef90	UniRef90_A0A2V2GLN0	DNA methyltransferase (Fragment)	NA
UHGV-0101258_25	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0101258_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0101258_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0101258_25	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0101258_27	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101258_27	Structural annotation	TIGR04381	NA	NA
UHGV-0101258_30	PHROG	phrog_3777	NA	unknown function
UHGV-0101258_30	UniRef90	UniRef90_A0A417F883	NA	NA
UHGV-0101258_30	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0101258_30	Pfam	PF12957	NA	DUF3846
UHGV-0101258_30	Structural annotation	PF12957	NA	NA
UHGV-0101258_31	PHROG	phrog_38832	NA	unknown function
UHGV-0101258_31	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0101258_33	PHROG	phrog_22543	NA	unknown function
UHGV-0101258_33	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0101258_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0101258_37	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0101258_37	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0101258_37	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0101258_40	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101258_40	UniRef90	UniRef90_A0A2V2GLL9	Metallophos_2 domain-containing protein	NA
UHGV-0101258_40	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-0101258_40	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0101258_41	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0101258_41	UniRef90	UniRef90_A0A7X5DZ93	Rha family transcriptional regulator	NA
UHGV-0101258_41	eggNOG-mapper	33035.JPJF01000043_gene993	NA	NA
UHGV-0101258_41	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0101258_41	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0101258_41	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0101258_41	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0101258_42	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0101258_42	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0101258_43	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0101258_43	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0101258_43	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-0101258_43	eggNOG-mapper	1235800.C819_00494	Terminase small subunit	NA
UHGV-0101258_43	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0101258_43	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0101258_43	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0101258_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0101258_44	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0101258_44	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0101258_44	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0101258_44	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0101258_44	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0101258_44	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0101258_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-0101258_44	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0101258_45	PHROG	phrog_533	portal protein	head and packaging
UHGV-0101258_45	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-0101258_45	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0101258_45	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0101258_45	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0101258_46	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0101258_46	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0101258_46	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0101258_46	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0101258_46	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0101258_46	COG	COG2369	NA	NA
UHGV-0101258_46	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0101258_47	Structural annotation	PF11607, MF_00436, NF011232, COG1923	NA	NA
UHGV-0101258_48	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0101258_48	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0101258_49	PHROG	phrog_10	major head protein	head and packaging
UHGV-0101258_49	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0101258_49	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0101258_49	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0101258_49	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0101258_49	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0101258_49	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0101258_50	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0101258_50	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0101258_51	PHROG	phrog_3366	NA	unknown function
UHGV-0101258_51	eggNOG-mapper	642492.Clole_0823	NA	NA
UHGV-0101258_51	Pfam	PF20536	NA	DUF6751
UHGV-0101258_51	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0101258_52	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0101258_52	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0101258_52	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0101258_52	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0101258_52	Structural annotation	PF11114	NA	NA
UHGV-0101258_53	PHROG	phrog_3266	tail completion	connector
UHGV-0101258_53	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0101258_53	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0101258_53	Structural annotation	PF12691	NA	NA
UHGV-0101258_54	PHROG	phrog_3099	NA	unknown function
UHGV-0101258_54	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0101258_54	Structural annotation	TIGR02126	NA	NA
UHGV-0101258_55	PHROG	phrog_11299	NA	unknown function
UHGV-0101258_55	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0101258_55	Structural annotation	PF10666	NA	NA
UHGV-0101258_56	PHROG	phrog_706	NA	unknown function
UHGV-0101258_56	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0101258_56	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0101258_56	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0101258_56	Structural annotation	PF06854	NA	NA
UHGV-0101258_57	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0101258_57	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0101258_57	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-0101258_57	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0101258_57	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0101258_58	PHROG	phrog_1194	NA	unknown function
UHGV-0101258_58	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0101258_58	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0101258_59	PHROG	phrog_13879	NA	unknown function
UHGV-0101258_59	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0101258_59	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0101258_61	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0101258_61	PHROG	phrog_11157	NA	unknown function
UHGV-0101258_61	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0101258_61	eggNOG-mapper	476272.RUMHYD_02867	NA	NA
UHGV-0101258_61	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0101258_61	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0101258_61	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0101258_61	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0101258_62	PHROG	phrog_18725	NA	unknown function
UHGV-0101258_62	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0101258_62	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0101258_64	KOfam	K10461	KLHL24_35; kelch-like protein 24/35	NA
UHGV-0101258_64	PHROG	phrog_12615	NA	unknown function
UHGV-0101258_64	Pfam	PF13964	Kelch motif	Kelch_6
UHGV-0101258_64	Pfam	PF13854	Kelch motif	Kelch_5
UHGV-0101258_64	Pfam	PF07646	Kelch motif	Kelch_2
UHGV-0101258_64	Structural annotation	PF07250, MF_01195, TIGR03548, COG3055	NA	NA
UHGV-0101258_69	PHROG	phrog_27545	NA	unknown function
UHGV-0101258_69	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0101258_69	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0101258_69	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0101258_70	PHROG	phrog_937	hemolysin	other
UHGV-0101258_70	eggNOG-mapper	1235835.C814_01939	NA	NA
UHGV-0101258_71	eggNOG-mapper	1347392.CCEZ01000043_gene405	NA	NA
UHGV-0101258_72	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0101258_72	PHROG	phrog_435	endolysin	lysis
UHGV-0101258_72	UniRef90	UniRef90_A0A2V2GRI9	MurNAc-LAA domain-containing protein	NA
UHGV-0101258_72	eggNOG-mapper	913865.DOT_0829	PFAM Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0101258_72	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0101258_72	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0101258_72	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA