UHGV-0101288

Genome information

Genome length 38,330 bps

CDS count 62

Completeness 89.67% (medium-quality)

geNomad score 0.9712

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101288
vOTU ID	vOTU-036218
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_228056
BioSample	SAMEA3708685
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9712
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.73
Jumbo phage	No

Genome content
Genome length	38,330 bps
GC content	55.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.03%
Average CDS length	559.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101288_1	KOfam	K03602	xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]	NA
UHGV-0101288_1	UniRef90	UniRef90_A0A5K1IX02	Exodeoxyribonuclease 7 small subunit	NA
UHGV-0101288_1	eggNOG-mapper	742722.HMPREF9463_01291	Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides	NA
UHGV-0101288_1	Pfam	PF02609	Exonuclease VII small subunit	Exonuc_VII_S
UHGV-0101288_1	NCBIFam	TIGR01280.1	exodeoxyribonuclease VII small subunit	NA
UHGV-0101288_1	COG	COG1722	Exonuclease VII small subunit	NA
UHGV-0101288_1	HAMAP	MF_00337	Exodeoxyribonuclease 7 small subunit [xseB]	NA
UHGV-0101288_2	KOfam	K14059	int; integrase	NA
UHGV-0101288_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0101288_2	UniRef90	UniRef90_A0A3D1WU34	Tyr recombinase domain-containing protein	NA
UHGV-0101288_2	eggNOG-mapper	1125712.HMPREF1316_1553	DNA integration	NA
UHGV-0101288_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0101288_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0101288_2	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0101288_3	UniRef90	UniRef90_UPI0018CC50C6	transcriptional regulator	NA
UHGV-0101288_3	eggNOG-mapper	700015.Corgl_1279	IMG reference gene	NA
UHGV-0101288_3	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0101288_4	UniRef90	UniRef90_A0A1Y4HSD1	HTH cro/C1-type domain-containing protein	NA
UHGV-0101288_4	eggNOG-mapper	521003.COLINT_02305	NA	NA
UHGV-0101288_4	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0101288_4	Structural annotation	PF08667, NF041951, COG3655	NA	NA
UHGV-0101288_6	UniRef90	UniRef90_A0A3D1WRS4	HTH_17 domain-containing protein	NA
UHGV-0101288_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0101288_6	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0101288_13	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0101288_13	UniRef90	UniRef90_UPI0006881372	AAA family ATPase	NA
UHGV-0101288_13	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0101288_13	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0101288_14	PHROG	phrog_18107	NA	unknown function
UHGV-0101288_14	eggNOG-mapper	742742.HMPREF9452_00433	NA	NA
UHGV-0101288_14	Structural annotation	PF05037	NA	NA
UHGV-0101288_15	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0101288_15	UniRef90	UniRef90_A0A359MQV2	ERCC4 domain-containing protein	NA
UHGV-0101288_15	eggNOG-mapper	742742.HMPREF9452_00432	NA	NA
UHGV-0101288_15	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0101288_16	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0101288_16	UniRef90	UniRef90_UPI0012DD8630	bifunctional DNA primase/polymerase	NA
UHGV-0101288_16	eggNOG-mapper	1232453.BAIF02000110_gene773	AAA domain	NA
UHGV-0101288_16	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0101288_16	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0101288_16	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0101288_16	COG	COG3598	RecA-family ATPase	NA
UHGV-0101288_16	Structural annotation	PF05272, PF09250, PF08708, MF_00016, NF011296, COG5545	NA	NA
UHGV-0101288_19	Structural annotation	PF17399	NA	NA
UHGV-0101288_24	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0101288_24	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0101288_24	UniRef90	UniRef90_UPI0009ECF5B3	Lar family restriction alleviation protein	NA
UHGV-0101288_24	eggNOG-mapper	10704.B4UTV4_BP163	NA	NA
UHGV-0101288_24	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0101288_24	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0101288_24	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0101288_24	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0101288_26	PHROG	phrog_21525	NA	unknown function
UHGV-0101288_30	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0101288_30	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0101288_31	KOfam	K06940	NA	NA
UHGV-0101288_31	PHROG	phrog_32498	NA	unknown function
UHGV-0101288_31	UniRef90	UniRef90_A0A5K1JEP9	Flagellin N-methylase	NA
UHGV-0101288_31	eggNOG-mapper	476272.RUMHYD_03327	Putative zinc- or iron-chelating domain	NA
UHGV-0101288_31	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0101288_32	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0101288_32	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0101288_32	UniRef90	UniRef90_A0A5K1JD62	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0101288_32	eggNOG-mapper	999419.HMPREF1077_01720	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0101288_32	Pfam	PF00692	dUTPase	dUTPase
UHGV-0101288_32	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0101288_32	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0101288_32	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0101288_35	Structural annotation	PF10668, TIGR01321	NA	NA
UHGV-0101288_36	Structural annotation	PF12857	NA	NA
UHGV-0101288_37	UniRef90	UniRef90_A0A412HTW9	NA	NA
UHGV-0101288_38	Structural annotation	PF20987	NA	NA
UHGV-0101288_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0101288_40	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0101288_47	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0101288_47	UniRef90	UniRef90_A0A5K1JDU9	Phage terminase, small subunit	NA
UHGV-0101288_47	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0101288_47	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0101288_48	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0101288_48	UniRef90	UniRef90_A0A5K1IZ70	Phage Terminase	NA
UHGV-0101288_48	eggNOG-mapper	1504822.CCNO01000015_gene618	Terminase	NA
UHGV-0101288_48	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0101288_48	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0101288_48	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0101288_48	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0101288_49	PHROG	phrog_12	portal protein	head and packaging
UHGV-0101288_49	UniRef90	UniRef90_UPI0012DD2CF8	phage portal protein	NA
UHGV-0101288_49	eggNOG-mapper	1504822.CCNO01000015_gene619	Portal protein	NA
UHGV-0101288_49	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0101288_49	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0101288_49	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0101288_49	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0101288_50	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0101288_50	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0101288_50	UniRef90	UniRef90_A0A5K1JFC3	ATP-dependent Clp protease proteolytic subunit 1	NA
UHGV-0101288_50	eggNOG-mapper	1504822.CCNO01000015_gene620	serine-type endopeptidase activity	NA
UHGV-0101288_50	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0101288_50	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0101288_50	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0101288_51	PHROG	phrog_10	major head protein	head and packaging
UHGV-0101288_51	UniRef90	UniRef90_A0A5K1JE47	Phage capsid family protein	NA
UHGV-0101288_51	eggNOG-mapper	1504822.CCNO01000015_gene621	Phage capsid family	NA
UHGV-0101288_51	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0101288_51	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0101288_51	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0101288_52	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0101288_52	Structural annotation	TIGR02215	NA	NA
UHGV-0101288_53	Structural annotation	PF06141	NA	NA
UHGV-0101288_54	PHROG	phrog_290	minor tail protein	tail
UHGV-0101288_54	UniRef90	UniRef90_UPI0012DF3876	phage tail tube protein	NA
UHGV-0101288_54	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0101288_54	Structural annotation	PF18906, TIGR01603, COG3498	NA	NA
UHGV-0101288_56	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0101288_57	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0101288_57	UniRef90	UniRef90_A0A5K1JCK1	Chromosome partition protein Smc	NA
UHGV-0101288_57	eggNOG-mapper	1504822.CCNO01000015_gene632	NA	NA
UHGV-0101288_57	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0101288_57	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0101288_57	COG	COG5283	Phage-related tail protein	NA
UHGV-0101288_57	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0101288_58	UniRef90	UniRef90_A0A5K1JBQ1	Fibronectin type-III domain-containing protein	NA
UHGV-0101288_58	eggNOG-mapper	1504822.CCNO01000015_gene633	cellulase activity	NA
UHGV-0101288_58	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0101288_58	Structural annotation	PF00041, PF02010, PF05939, MF_04116, NF010681, COG3401, COG2372, COG5437	NA	NA
UHGV-0101288_59	PHROG	phrog_1887	tail protein	tail
UHGV-0101288_59	eggNOG-mapper	1504822.CCNO01000015_gene634	NA	NA
UHGV-0101288_59	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0101288_60	Structural annotation	PF16450, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0101288_62	Structural annotation	PF15513	NA	NA