UHGV-0101304

Genome information

Genome length 29,793 bps

CDS count 49

Completeness 84.08% (medium-quality)

geNomad score 0.9569

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101304
vOTU ID	vOTU-042383
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_219982
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9569
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.21
Jumbo phage	No

Genome content
Genome length	29,793 bps
GC content	42.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.75%
Average CDS length	567.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101304_1	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0101304_1	UniRef90	UniRef90_R6Q814	NlpC/P60 domain-containing protein	NA
UHGV-0101304_1	eggNOG-mapper	742735.HMPREF9467_02997	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0101304_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0101304_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0101304_2	PHROG	phrog_36029	NA	unknown function
UHGV-0101304_2	UniRef90	UniRef90_A0A345BPS8	Holin of superfamily 6	NA
UHGV-0101304_2	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-0101304_3	UniRef90	UniRef90_A0A412NHF8	Branched-chain amino acid ABC transporter permease	NA
UHGV-0101304_3	eggNOG-mapper	411463.EUBVEN_00420	NA	NA
UHGV-0101304_4	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0101304_5	PHROG	phrog_521	tail protein	tail
UHGV-0101304_5	UniRef90	UniRef90_UPI00195FBB35	NA	NA
UHGV-0101304_5	eggNOG-mapper	1291050.JAGE01000001_gene2937	NA	NA
UHGV-0101304_5	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0101304_5	COG	COG3778	NA	NA
UHGV-0101304_5	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0101304_6	PHROG	phrog_6	baseplate protein	tail
UHGV-0101304_6	UniRef90	UniRef90_UPI001961215D	baseplate J/gp47 family protein	NA
UHGV-0101304_6	eggNOG-mapper	756499.Desde_4124	Baseplate J-like protein	NA
UHGV-0101304_6	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0101304_6	COG	COG3299	NA	NA
UHGV-0101304_6	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0101304_7	PHROG	phrog_120	baseplate protein	tail
UHGV-0101304_7	UniRef90	UniRef90_UPI001960FF6C	NA	NA
UHGV-0101304_7	eggNOG-mapper	1291050.JAGE01000001_gene2935	NA	NA
UHGV-0101304_7	Pfam	PF10934	NA	DUF2634
UHGV-0101304_7	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0101304_7	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0101304_8	PHROG	phrog_579	NA	unknown function
UHGV-0101304_8	UniRef90	UniRef90_UPI001961C6CF	NA	NA
UHGV-0101304_8	eggNOG-mapper	1410653.JHVC01000006_gene207	NA	NA
UHGV-0101304_8	Pfam	PF10844	NA	DUF2577
UHGV-0101304_8	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0101304_9	PHROG	phrog_400	tail protein	tail
UHGV-0101304_9	UniRef90	UniRef90_A0A7S7J193	Alpha/beta hydrolase	NA
UHGV-0101304_9	eggNOG-mapper	756499.Desde_4121	NLP P60 protein	NA
UHGV-0101304_9	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0101304_9	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0101304_10	KOfam	K21687	rpfA; resuscitation-promoting factor RpfA	NA
UHGV-0101304_10	PHROG	phrog_380	endolysin	lysis
UHGV-0101304_10	UniRef90	UniRef90_UPI00195F9296	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0101304_10	eggNOG-mapper	1286171.EAL2_c11150	LysM domain	NA
UHGV-0101304_10	Pfam	PF01476	LysM domain	LysM
UHGV-0101304_10	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0101304_10	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0101304_11	PHROG	phrog_33570	NA	unknown function
UHGV-0101304_11	UniRef90	UniRef90_UPI00195F25E7	tape measure protein	NA
UHGV-0101304_11	eggNOG-mapper	756499.Desde_4119	tape measure	NA
UHGV-0101304_11	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0101304_11	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0101304_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0101304_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0101304_12	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0101304_12	PHROG	phrog_14632	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0101304_12	UniRef90	UniRef90_UPI00195FAF72	ribonuclease H-like domain-containing protein	NA
UHGV-0101304_12	eggNOG-mapper	1042156.CXIVA_07100	EXOIII	NA
UHGV-0101304_12	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0101304_12	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0101304_12	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0101304_12	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0101304_13	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0101304_13	UniRef90	UniRef90_UPI001E0CCDCC	phage portal protein	NA
UHGV-0101304_13	eggNOG-mapper	332101.JIBU02000023_gene4806	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0101304_13	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0101304_13	Structural annotation	PF08890	NA	NA
UHGV-0101304_14	PHROG	phrog_365	tail protein	tail
UHGV-0101304_14	UniRef90	UniRef90_UPI00195F9150	phage tail tube protein	NA
UHGV-0101304_14	eggNOG-mapper	646529.Desaci_1308	Phage tail tube protein	NA
UHGV-0101304_14	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0101304_14	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0101304_15	PHROG	phrog_1480	tail sheath	tail
UHGV-0101304_15	UniRef90	UniRef90_UPI00195F60C0	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0101304_15	eggNOG-mapper	931276.Cspa_c07630	Phage tail sheath C-terminal domain	NA
UHGV-0101304_15	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0101304_15	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0101304_15	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0101304_16	Pfam	PF20765	NA	DUF6838
UHGV-0101304_16	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0101304_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0101304_17	UniRef90	UniRef90_UPI0019610B0B	HK97 gp10 family phage protein	NA
UHGV-0101304_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0101304_17	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0101304_18	PHROG	phrog_25	head closure Hc1	connector
UHGV-0101304_18	UniRef90	UniRef90_UPI00195FD010	phage head closure protein	NA
UHGV-0101304_18	eggNOG-mapper	935948.KE386495_gene1331	Phage head-tail joining protein	NA
UHGV-0101304_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0101304_18	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0101304_18	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0101304_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0101304_19	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0101304_19	UniRef90	UniRef90_UPI0019610EBA	head-tail connector protein	NA
UHGV-0101304_19	eggNOG-mapper	632245.CLP_2693	Phage gp6-like head-tail connector protein	NA
UHGV-0101304_19	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0101304_19	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0101304_19	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0101304_20	Pfam	PF02037	SAP domain	SAP
UHGV-0101304_20	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0101304_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0101304_21	UniRef90	UniRef90_UPI001961BFFE	phage major capsid protein	NA
UHGV-0101304_21	eggNOG-mapper	903814.ELI_1299	Phage capsid family	NA
UHGV-0101304_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0101304_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0101304_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0101304_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0101304_22	KOfam	K06904	NA	NA
UHGV-0101304_22	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0101304_22	UniRef90	UniRef90_UPI0019615B9B	HK97 family phage prohead protease	NA
UHGV-0101304_22	eggNOG-mapper	1304866.K413DRAFT_1224	Phage prohead protease, HK97 family	NA
UHGV-0101304_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0101304_22	COG	COG3740	Phage head maturation protease	NA
UHGV-0101304_22	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0101304_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0101304_23	UniRef90	UniRef90_UPI00195F5530	phage portal protein	NA
UHGV-0101304_23	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-0101304_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0101304_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0101304_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0101304_23	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0101304_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0101304_24	UniRef90	UniRef90_UPI001A9C6F55	terminase large subunit	NA
UHGV-0101304_24	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0101304_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0101304_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0101304_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0101304_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0101304_25	UniRef90	UniRef90_UPI001898F58A	P27 family phage terminase small subunit	NA
UHGV-0101304_25	eggNOG-mapper	397288.C806_00077	NA	NA
UHGV-0101304_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0101304_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0101304_26	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101304_26	UniRef90	UniRef90_UPI001961E12A	HNH endonuclease	NA
UHGV-0101304_26	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-0101304_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0101304_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0101304_27	UniRef90	UniRef90_A0A174EB71	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-0101304_27	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-0101304_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0101304_27	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0101304_28	PHROG	phrog_6568	NA	unknown function
UHGV-0101304_31	PHROG	phrog_8684	NA	unknown function
UHGV-0101304_31	UniRef90	UniRef90_A0A415D587	YopX domain-containing protein	NA
UHGV-0101304_31	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0101304_31	Pfam	PF09643	YopX protein	YopX
UHGV-0101304_31	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0101304_31	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0101304_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0101304_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0101304_38	UniRef90	UniRef90_UPI001961C9E0	single-stranded DNA-binding protein	NA
UHGV-0101304_38	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-0101304_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0101304_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0101304_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0101304_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0101304_38	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0101304_41	PHROG	phrog_7566	NA	unknown function
UHGV-0101304_41	eggNOG-mapper	97139.C824_05985	NA	NA
UHGV-0101304_42	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0101304_42	eggNOG-mapper	632245.CLP_2642	NA	NA
UHGV-0101304_42	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0101304_44	PHROG	phrog_24518	NA	unknown function
UHGV-0101304_44	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0101304_47	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0101304_47	UniRef90	UniRef90_UPI001A9C15D9	helix-turn-helix domain-containing protein	NA
UHGV-0101304_47	eggNOG-mapper	1540257.JQMW01000013_gene774	NA	NA
UHGV-0101304_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101304_48	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0101304_48	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0101304_48	UniRef90	UniRef90_A0A7X5E0L6	XRE family transcriptional regulator	NA
UHGV-0101304_48	eggNOG-mapper	1121423.JONT01000002_gene2372	Peptidase S24-like	NA
UHGV-0101304_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101304_48	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0101304_48	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0101304_48	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0101304_49	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0101304_49	PHROG	phrog_3989	NA	unknown function
UHGV-0101304_49	UniRef90	UniRef90_A0A0X1U7P7	BRCT domain-containing protein	NA
UHGV-0101304_49	eggNOG-mapper	748727.CLJU_c36230	3' exoribonuclease, RNase T-like	NA
UHGV-0101304_49	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0101304_49	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0101304_49	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0101304_49	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0101304_49	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA