UHGV-0101320

Genome information

Genome length 37,218 bps

CDS count 54

Completeness 98.44% (high-quality)

geNomad score 0.9577

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101320
vOTU ID	vOTU-012319
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_211316
BioSample	SAMEA3449314
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.44% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9577
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.24
Jumbo phage	No

Genome content
Genome length	37,218 bps
GC content	64.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.56%
Average CDS length	641.39 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101320_1	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-0101320_1	PHROG	phrog_487	NrdD-like anaerobic ribonucleotide reductase large subunit	moron, auxiliary metabolic gene and host takeover
UHGV-0101320_1	UniRef90	UniRef90_A0A7K3L0E7	Anaerobic ribonucleoside triphosphate reductase	NA
UHGV-0101320_1	eggNOG-mapper	1384484.AEQU_2212	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0101320_1	Pfam	PF03477	ATP cone domain	ATP-cone
UHGV-0101320_1	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0101320_1	NCBIFam	NF005497.0	anaerobic ribonucleoside triphosphate reductase	NA
UHGV-0101320_1	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0101320_1	Structural annotation	PF13597, PF03477, MF_02058, MF_00440, NF005497, COG1328	NA	NA
UHGV-0101320_3	eggNOG-mapper	1384484.AEQU_0918	NA	NA
UHGV-0101320_4	KOfam	K24042	yitJ; methionine synthase / methylenetetrahydrofolate reductase (NADH) [EC:2.1.1.13 1.5.1.54]	NA
UHGV-0101320_4	UniRef90	UniRef90_UPI0013EA2E4A	homocysteine S-methyltransferase family protein	NA
UHGV-0101320_4	eggNOG-mapper	1121866.AUGK01000002_gene1476	Homocysteine S-methyltransferase	NA
UHGV-0101320_4	Pfam	PF02574	Homocysteine S-methyltransferase	S-methyl_trans
UHGV-0101320_4	COG	COG0646	Methionine synthase I (cobalamin-dependent), methyltransferase domain	NA
UHGV-0101320_6	eggNOG-mapper	1232436.CAPF01000032_gene1391	NA	NA
UHGV-0101320_8	UniRef90	UniRef90_A0A6N9JIE3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0101320_8	eggNOG-mapper	1232453.BAIF02000059_gene1616	Ami_2	NA
UHGV-0101320_8	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0101320_9	PHROG	phrog_10091	holin	lysis
UHGV-0101320_9	UniRef90	UniRef90_UPI00148CFC94	phage holin	NA
UHGV-0101320_9	eggNOG-mapper	445975.COLSTE_02144	Bacteriophage holin	NA
UHGV-0101320_9	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0101320_9	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0101320_9	COG	COG5546	NA	NA
UHGV-0101320_9	Structural annotation	COG5546	NA	NA
UHGV-0101320_11	PHROG	phrog_3639	minor tail protein	tail
UHGV-0101320_11	UniRef90	UniRef90_UPI00195AA17C	BppU family phage baseplate upper protein	NA
UHGV-0101320_11	eggNOG-mapper	1121866.AUGK01000006_gene893	NA	NA
UHGV-0101320_11	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0101320_12	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0101320_12	UniRef90	UniRef90_A0A1Y4DQT0	Prophage_tail domain-containing protein	NA
UHGV-0101320_12	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-0101320_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0101320_12	COG	COG4926	Phage-related protein	NA
UHGV-0101320_12	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0101320_13	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0101320_13	UniRef90	UniRef90_UPI001302655C	phage tail family protein	NA
UHGV-0101320_13	eggNOG-mapper	445975.COLSTE_02154	phage tail	NA
UHGV-0101320_13	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0101320_13	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0101320_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0101320_13	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0101320_14	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0101320_14	UniRef90	UniRef90_A0A1Y3UG21	Phage tail tape measure protein	NA
UHGV-0101320_14	eggNOG-mapper	1504822.CCNO01000015_gene632	NA	NA
UHGV-0101320_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0101320_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0101320_14	COG	COG5283	Phage-related tail protein	NA
UHGV-0101320_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0101320_15	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0101320_17	PHROG	phrog_290	minor tail protein	tail
UHGV-0101320_17	UniRef90	UniRef90_UPI0013EAFFA2	phage tail tube protein	NA
UHGV-0101320_17	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0101320_17	Structural annotation	PF18906, TIGR01603, COG3498	NA	NA
UHGV-0101320_18	Structural annotation	PF20873	NA	NA
UHGV-0101320_19	Structural annotation	PF08873	NA	NA
UHGV-0101320_20	Structural annotation	TIGR02215	NA	NA
UHGV-0101320_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0101320_22	UniRef90	UniRef90_A0A1H4JC67	Phage major capsid protein, HK97 family	NA
UHGV-0101320_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0101320_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0101320_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0101320_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0101320_23	PHROG	phrog_2976	head maturation protease	head and packaging
UHGV-0101320_23	UniRef90	UniRef90_A0A413UHL9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0101320_23	eggNOG-mapper	945712.CULC22_01177	Protease subunit of ATP-dependent Clp proteases	NA
UHGV-0101320_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0101320_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0101320_23	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0101320_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0101320_24	UniRef90	UniRef90_A0A1Y3UFU2	Phage portal protein	NA
UHGV-0101320_24	eggNOG-mapper	1100720.ALKN01000018_gene1725	TIGRFAM phage portal protein, HK97 family	NA
UHGV-0101320_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0101320_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0101320_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0101320_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0101320_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0101320_25	UniRef90	UniRef90_UPI0013EE3342	terminase large subunit	NA
UHGV-0101320_25	eggNOG-mapper	1504822.CCNO01000015_gene618	Terminase	NA
UHGV-0101320_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0101320_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0101320_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0101320_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0101320_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0101320_26	UniRef90	UniRef90_A0A1H4JCA0	Phage terminase, small subunit, putative, P27 family	NA
UHGV-0101320_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0101320_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0101320_27	PHROG	phrog_6975	NA	unknown function
UHGV-0101320_27	UniRef90	UniRef90_UPI001C0290E2	NA	NA
UHGV-0101320_27	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0101320_28	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-0101320_28	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0101320_28	UniRef90	UniRef90_F0SQP3	Phage DNA modification protein	NA
UHGV-0101320_28	eggNOG-mapper	619693.HMPREF6745_2515	NA	NA
UHGV-0101320_28	Structural annotation	PF16092, MF_02210, NF007025, COG3818	NA	NA
UHGV-0101320_29	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0101320_29	UniRef90	UniRef90_UPI0009879224	ParB/Srx family N-terminal domain-containing protein	NA
UHGV-0101320_29	eggNOG-mapper	521003.COLINT_02335	DNA methylase	NA
UHGV-0101320_29	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0101320_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0101320_29	COG	COG0863	DNA modification methylase	NA
UHGV-0101320_29	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0101320_30	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0101320_30	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101320_30	UniRef90	UniRef90_UPI0013E9C32A	HNH endonuclease	NA
UHGV-0101320_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0101320_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0101320_30	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0101320_33	Structural annotation	PF01503, NF001613, COG0140	NA	NA
UHGV-0101320_35	PHROG	phrog_21525	NA	unknown function
UHGV-0101320_42	eggNOG-mapper	469378.Ccur_02900	NA	NA
UHGV-0101320_43	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0101320_43	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0101320_43	UniRef90	UniRef90_A0A1Y4HSG3	IstB_IS21 domain-containing protein	NA
UHGV-0101320_43	eggNOG-mapper	521003.COLINT_02321	IstB-like ATP binding protein	NA
UHGV-0101320_43	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0101320_43	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0101320_44	PHROG	phrog_15768	NA	unknown function
UHGV-0101320_44	UniRef90	UniRef90_UPI00096A3265	NA	NA
UHGV-0101320_44	eggNOG-mapper	521003.COLINT_02320	NA	NA
UHGV-0101320_44	Pfam	PF19808	NA	DUF6291
UHGV-0101320_44	Structural annotation	PF19808	NA	NA
UHGV-0101320_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0101320_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0101320_45	UniRef90	UniRef90_UPI0015560378	single-stranded DNA-binding protein	NA
UHGV-0101320_45	eggNOG-mapper	1121866.AUGK01000002_gene1540	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0101320_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0101320_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0101320_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0101320_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0101320_45	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0101320_46	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0101320_46	UniRef90	UniRef90_A0A1H4JDX0	ERF superfamily protein	NA
UHGV-0101320_46	eggNOG-mapper	575594.ACOH01000003_gene815	ERF superfamily	NA
UHGV-0101320_46	Pfam	PF04404	ERF superfamily	ERF
UHGV-0101320_47	PHROG	phrog_2139	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101320_47	UniRef90	UniRef90_UPI0013EA84CB	PD-(D/E)XK nuclease family protein	NA
UHGV-0101320_47	eggNOG-mapper	428127.EUBDOL_01249	NA	NA
UHGV-0101320_47	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0101320_47	Structural annotation	PF12705, MF_03030, TIGR04328, COG2251	NA	NA
UHGV-0101320_48	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0101320_48	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0101320_48	UniRef90	UniRef90_UPI00197F4C50	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0101320_48	eggNOG-mapper	742722.HMPREF9463_00198	Endodeoxyribonuclease RusA	NA
UHGV-0101320_48	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0101320_48	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0101320_48	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0101320_49	eggNOG-mapper	521003.COLINT_02311	NA	NA
UHGV-0101320_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0101320_53	UniRef90	UniRef90_A0A316P139	HTH cro/C1-type domain-containing protein	NA
UHGV-0101320_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101320_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0101320_53	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0101320_54	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0101320_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101320_54	UniRef90	UniRef90_A0A415JHZ4	XRE family transcriptional regulator	NA
UHGV-0101320_54	eggNOG-mapper	1095726.HMPREF1116_1617	transcriptional	NA
UHGV-0101320_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101320_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0101320_54	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA