UHGV-0101379

Genome information

Genome length 36,200 bps

CDS count 54

Completeness 80.36% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101379
vOTU ID	vOTU-036091
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_202051
BioSample	SAMEA3449226
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.88
Jumbo phage	No

Genome content
Genome length	36,200 bps
GC content	44.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	88.74%
Average CDS length	597.28 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101379_1	eggNOG-mapper	316274.Haur_4576	PFAM restriction endonuclease	NA
UHGV-0101379_1	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0101379_1	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0101379_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0101379_2	PHROG	phrog_20388	endolysin	lysis
UHGV-0101379_2	UniRef90	UniRef90_C6LIN5	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0101379_2	eggNOG-mapper	478749.BRYFOR_08515	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-0101379_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0101379_2	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0101379_2	Pfam	PF05036	SPOR domain	SPOR
UHGV-0101379_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0101379_3	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0101379_4	PHROG	phrog_6616	tail protein	tail
UHGV-0101379_4	UniRef90	UniRef90_A0A3D3U8S7	Peptidase S74 domain-containing protein	NA
UHGV-0101379_4	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0101379_4	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0101379_5	PHROG	phrog_1194	NA	unknown function
UHGV-0101379_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0101379_6	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-0101379_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0101379_6	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0101379_6	COG	COG5412	Phage-related protein	NA
UHGV-0101379_6	Structural annotation	PF11172	NA	NA
UHGV-0101379_7	PHROG	phrog_706	NA	unknown function
UHGV-0101379_7	UniRef90	UniRef90_A0A1C5M8I2	Bacteriophage Gp15 protein	NA
UHGV-0101379_7	eggNOG-mapper	33035.JPJF01000106_gene3124	Bacteriophage Gp15 protein	NA
UHGV-0101379_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0101379_7	Structural annotation	PF06854	NA	NA
UHGV-0101379_8	PHROG	phrog_11299	NA	unknown function
UHGV-0101379_8	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0101379_8	Structural annotation	PF10666	NA	NA
UHGV-0101379_9	PHROG	phrog_3099	NA	unknown function
UHGV-0101379_9	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0101379_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0101379_10	PHROG	phrog_3266	tail completion	connector
UHGV-0101379_10	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0101379_10	Structural annotation	PF12691	NA	NA
UHGV-0101379_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0101379_11	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0101379_11	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0101379_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0101379_11	Structural annotation	PF11114	NA	NA
UHGV-0101379_12	PHROG	phrog_3366	NA	unknown function
UHGV-0101379_12	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0101379_12	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0101379_14	PHROG	phrog_8680	NA	unknown function
UHGV-0101379_14	UniRef90	UniRef90_UPI0015711ED3	NA	NA
UHGV-0101379_14	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0101379_14	Pfam	PF14386	NA	DUF4417
UHGV-0101379_14	Structural annotation	PF14386	NA	NA
UHGV-0101379_15	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101379_15	UniRef90	UniRef90_A0A0H3N242	Phage-related protein	NA
UHGV-0101379_15	eggNOG-mapper	645991.Sgly_0324	NA	NA
UHGV-0101379_17	PHROG	phrog_1129	holin	lysis
UHGV-0101379_17	UniRef90	UniRef90_A0A417JD09	Enolase	NA
UHGV-0101379_17	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0101379_17	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0101379_17	Structural annotation	PF06946	NA	NA
UHGV-0101379_18	PHROG	phrog_918	NA	unknown function
UHGV-0101379_18	UniRef90	UniRef90_UPI0004D82A84	NA	NA
UHGV-0101379_18	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-0101379_18	Pfam	PF19791	NA	DUF6275
UHGV-0101379_18	Structural annotation	PF19791	NA	NA
UHGV-0101379_19	PHROG	phrog_1233	NA	unknown function
UHGV-0101379_19	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0101379_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0101379_20	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0101379_21	PHROG	phrog_544	major head protein	head and packaging
UHGV-0101379_21	UniRef90	UniRef90_A0A173R8P5	S-l_SbsC_C domain-containing protein	NA
UHGV-0101379_21	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0101379_21	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0101379_21	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0101379_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0101379_22	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0101379_22	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0101379_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0101379_24	UniRef90	UniRef90_UPI001D15D4B7	cysteine-rich KTR domain-containing protein	NA
UHGV-0101379_24	eggNOG-mapper	476272.RUMHYD_01773	Cysteine-rich KTR	NA
UHGV-0101379_24	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0101379_24	Structural annotation	PF14205, NF041070	NA	NA
UHGV-0101379_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0101379_25	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0101379_25	UniRef90	UniRef90_A0A396PTY1	Methyltransferase	NA
UHGV-0101379_25	eggNOG-mapper	888049.HMPREF8578_0283	DNA methylase	NA
UHGV-0101379_25	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0101379_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0101379_25	COG	COG0863	DNA modification methylase	NA
UHGV-0101379_25	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0101379_26	PHROG	phrog_28802	NA	unknown function
UHGV-0101379_26	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0101379_27	PHROG	phrog_20016	NA	unknown function
UHGV-0101379_27	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0101379_27	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0101379_27	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0101379_28	PHROG	phrog_16490	NA	unknown function
UHGV-0101379_28	UniRef90	UniRef90_A0A7M1S0F9	Spike protein/glycoprotein	NA
UHGV-0101379_28	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0101379_29	PHROG	phrog_21718	NA	unknown function
UHGV-0101379_29	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0101379_30	eggNOG-mapper	397288.C806_00051	NA	NA
UHGV-0101379_31	PHROG	phrog_16123	NA	unknown function
UHGV-0101379_31	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-0101379_32	PHROG	phrog_12389	NA	unknown function
UHGV-0101379_32	eggNOG-mapper	1511.CLOST_1250	NA	NA
UHGV-0101379_33	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0101379_33	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0101379_34	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0101379_34	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0101379_36	PHROG	phrog_3754	NA	unknown function
UHGV-0101379_36	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0101379_37	PHROG	phrog_3754	NA	unknown function
UHGV-0101379_37	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0101379_40	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0101379_40	UniRef90	UniRef90_A0A412EKN3	Phage capsid protein	NA
UHGV-0101379_40	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0101379_40	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0101379_40	COG	COG2369	NA	NA
UHGV-0101379_40	Structural annotation	PF06152	NA	NA
UHGV-0101379_41	eggNOG-mapper	1444310.JANV01000162_gene1160	NA	NA
UHGV-0101379_41	Pfam	PF00657	GDSL-like Lipase/Acylhydrolase	Lipase_GDSL
UHGV-0101379_42	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-0101379_43	PHROG	phrog_19695	NA	unknown function
UHGV-0101379_43	eggNOG-mapper	478749.BRYFOR_08558	NA	NA
UHGV-0101379_43	Structural annotation	PF19714	NA	NA
UHGV-0101379_46	PHROG	phrog_533	portal protein	head and packaging
UHGV-0101379_46	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0101379_46	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0101379_46	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0101379_47	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0101379_47	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0101379_47	UniRef90	UniRef90_A0A1C6CDG5	Phage terminase, large subunit, PBSX family	NA
UHGV-0101379_47	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0101379_47	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0101379_47	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0101379_47	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0101379_47	COG	COG1783	Phage terminase large subunit	NA
UHGV-0101379_47	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0101379_48	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101379_48	UniRef90	UniRef90_A0A075KJD6	Putative truncated GIY-YIG endonuclease	NA
UHGV-0101379_48	eggNOG-mapper	1399942.U3PCR9_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-0101379_48	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0101379_48	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0101379_48	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0101379_49	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0101379_49	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0101379_49	UniRef90	UniRef90_R6SKL2	Phage terminase small subunit	NA
UHGV-0101379_49	eggNOG-mapper	318464.IO99_00540	Terminase small subunit	NA
UHGV-0101379_49	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0101379_49	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0101379_49	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0101379_51	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0101379_51	UniRef90	UniRef90_UPI0003B4FCBA	MT-A70 family methyltransferase	NA
UHGV-0101379_51	eggNOG-mapper	999413.HMPREF1094_02193	Belongs to the MT-A70-like family	NA
UHGV-0101379_51	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0101379_51	Pfam	PF05063	MT-A70	MT-A70
UHGV-0101379_51	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0101379_52	PHROG	phrog_33130	NA	unknown function
UHGV-0101379_52	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0101379_52	Structural annotation	PF10922, MF_00839	NA	NA