UHGV-0101460

Genome information

Genome length 39,776 bps

CDS count 58

Completeness 95.86% (high-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101460
vOTU ID	vOTU-060313
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_227313
BioSample	SAMEA3708670
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.86% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.91
Jumbo phage	No

Genome content
Genome length	39,776 bps
GC content	39.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	90.38%
Average CDS length	623.17 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101460_1	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0101460_1	PHROG	phrog_7	endolysin	lysis
UHGV-0101460_1	UniRef90	UniRef90_A0A3R6HYB3	Lysozyme	NA
UHGV-0101460_1	eggNOG-mapper	693746.OBV_20240	Phage lysozyme	NA
UHGV-0101460_1	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0101460_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0101460_1	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0101460_1	HAMAP	MF_04110	Endolysin	NA
UHGV-0101460_1	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-0101460_2	PHROG	phrog_443	holin	lysis
UHGV-0101460_2	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0101460_2	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0101460_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0101460_2	Structural annotation	PF16945	NA	NA
UHGV-0101460_3	PHROG	phrog_1863	NA	unknown function
UHGV-0101460_3	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0101460_4	PHROG	phrog_1220	head protein	head and packaging
UHGV-0101460_4	eggNOG-mapper	1211817.CCAT010000079_gene1381	COG NOG18825 non supervised orthologous group	NA
UHGV-0101460_5	PHROG	phrog_538	minor tail protein	tail
UHGV-0101460_5	UniRef90	UniRef90_A0A1I3HJS7	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0101460_5	eggNOG-mapper	1121087.AUCK01000002_gene2497	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0101460_5	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0101460_5	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0101460_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0101460_6	UniRef90	UniRef90_A0A1I3HK03	Phage tail protein	NA
UHGV-0101460_6	eggNOG-mapper	411470.RUMGNA_02077	COG NOG18823 non supervised orthologous group	NA
UHGV-0101460_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0101460_6	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0101460_7	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0101460_7	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0101460_7	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0101460_8	PHROG	phrog_706	NA	unknown function
UHGV-0101460_8	UniRef90	UniRef90_A0A1C5VU91	Bacteriophage Gp15 protein	NA
UHGV-0101460_8	eggNOG-mapper	573061.Clocel_0219	Bacteriophage Gp15 protein	NA
UHGV-0101460_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0101460_8	Structural annotation	PF06854	NA	NA
UHGV-0101460_9	Structural annotation	PF20378	NA	NA
UHGV-0101460_10	PHROG	phrog_3099	NA	unknown function
UHGV-0101460_10	eggNOG-mapper	1125725.HMPREF1325_1337	NA	NA
UHGV-0101460_11	PHROG	phrog_3266	tail completion	connector
UHGV-0101460_11	Structural annotation	PF12691	NA	NA
UHGV-0101460_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0101460_12	UniRef90	UniRef90_UPI001A9B9821	capsid protein	NA
UHGV-0101460_12	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-0101460_12	Structural annotation	PF11114	NA	NA
UHGV-0101460_13	PHROG	phrog_3366	NA	unknown function
UHGV-0101460_13	Pfam	PF20536	NA	DUF6751
UHGV-0101460_13	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0101460_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0101460_15	PHROG	phrog_212	major head protein	head and packaging
UHGV-0101460_15	UniRef90	UniRef90_A0A412FGZ1	Phage capsid protein	NA
UHGV-0101460_15	eggNOG-mapper	318464.IO99_00580	NA	NA
UHGV-0101460_15	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0101460_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0101460_16	UniRef90	UniRef90_UPI00164B0393	phage scaffolding protein	NA
UHGV-0101460_16	eggNOG-mapper	411460.RUMTOR_02088	COG NOG36366 non supervised orthologous group	NA
UHGV-0101460_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0101460_16	Structural annotation	PF06810	NA	NA
UHGV-0101460_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0101460_18	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0101460_18	eggNOG-mapper	1292035.H476_1017	NA	NA
UHGV-0101460_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0101460_18	COG	COG2369	NA	NA
UHGV-0101460_18	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0101460_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0101460_19	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0101460_19	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0101460_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0101460_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0101460_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0101460_20	UniRef90	UniRef90_R7N5K9	Terminase_3 domain-containing protein	NA
UHGV-0101460_20	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-0101460_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0101460_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0101460_20	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0101460_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0101460_21	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0101460_21	UniRef90	UniRef90_UPI0015702ED4	terminase small subunit	NA
UHGV-0101460_21	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0101460_21	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0101460_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0101460_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0101460_21	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0101460_23	KOfam	K03040	rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]	NA
UHGV-0101460_23	UniRef90	UniRef90_R7QYD6	DNA-directed RNA polymerase subunit alpha	NA
UHGV-0101460_23	eggNOG-mapper	1541959.KQ51_00203	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	NA
UHGV-0101460_23	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0101460_23	COG	COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	NA
UHGV-0101460_23	Structural annotation	PF03118, NF005841	NA	NA
UHGV-0101460_26	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0101460_27	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0101460_27	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0101460_27	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0101460_27	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0101460_27	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0101460_27	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0101460_27	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0101460_27	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0101460_28	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0101460_28	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0101460_28	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0101460_28	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0101460_31	PHROG	phrog_874	NA	unknown function
UHGV-0101460_31	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0101460_31	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0101460_31	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0101460_34	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0101460_34	UniRef90	UniRef90_A0A412KFB8	Restriction alleviation protein, Lar family	NA
UHGV-0101460_34	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0101460_34	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0101460_34	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0101460_34	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0101460_35	UniRef90	UniRef90_UPI00192387A0	NA	NA
UHGV-0101460_35	eggNOG-mapper	744980.TRICHSKD4_3375	NA	NA
UHGV-0101460_36	PHROG	phrog_8684	NA	unknown function
UHGV-0101460_36	UniRef90	UniRef90_A0A6L6XDP0	YopX domain-containing protein	NA
UHGV-0101460_36	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0101460_36	Pfam	PF09643	YopX protein	YopX
UHGV-0101460_36	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0101460_36	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0101460_38	UniRef90	UniRef90_A0A0F0C7A4	NA	NA
UHGV-0101460_42	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0101460_42	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0101460_42	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0101460_42	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0101460_42	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0101460_42	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0101460_42	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0101460_43	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0101460_43	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0101460_43	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0101460_43	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0101460_44	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0101460_44	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0101460_44	UniRef90	UniRef90_A0A6N3H631	Endodeoxyribonuclease RusA	NA
UHGV-0101460_44	eggNOG-mapper	1399942.U3PDU0_9CAUD	magnesium ion binding	NA
UHGV-0101460_44	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0101460_45	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0101460_45	UniRef90	UniRef90_UPI001C016064	ORF6C domain-containing protein	NA
UHGV-0101460_45	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-0101460_45	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0101460_45	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0101460_45	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0101460_45	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0101460_46	PHROG	phrog_7566	NA	unknown function
UHGV-0101460_46	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-0101460_47	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101460_47	UniRef90	UniRef90_A0A174WPU3	Prophage Lp1 protein 19	NA
UHGV-0101460_47	eggNOG-mapper	742733.HMPREF9469_01848	NA	NA
UHGV-0101460_47	Pfam	PF12684	NA	DUF3799
UHGV-0101460_47	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0101460_47	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0101460_48	PHROG	phrog_3657	NA	unknown function
UHGV-0101460_48	eggNOG-mapper	1304866.K413DRAFT_3015	NA	NA
UHGV-0101460_49	PHROG	phrog_1499	NA	unknown function
UHGV-0101460_49	UniRef90	UniRef90_A0A316M6R3	AAA_23 domain-containing protein	NA
UHGV-0101460_49	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0101460_49	PADLOC	AAA_15	NA	NA
UHGV-0101460_49	Pfam	PF13476	AAA domain	AAA_23
UHGV-0101460_49	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0101460_49	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0101460_50	Structural annotation	PF11127	NA	NA
UHGV-0101460_51	PHROG	phrog_6058	NA	unknown function
UHGV-0101460_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101460_53	UniRef90	UniRef90_UPI00156E2D91	helix-turn-helix domain-containing protein	NA
UHGV-0101460_53	eggNOG-mapper	762051.LKI_09500	Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators	NA
UHGV-0101460_53	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0101460_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0101460_53	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0101460_54	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0101460_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101460_54	UniRef90	UniRef90_A0A844DZ87	Helix-turn-helix domain-containing protein	NA
UHGV-0101460_54	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-0101460_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101460_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0101460_54	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0101460_55	PHROG	phrog_87	metallo-protease	other
UHGV-0101460_55	UniRef90	UniRef90_A0A3R5ZQW8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0101460_55	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0101460_55	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0101460_55	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0101460_55	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0101460_56	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0101460_56	PHROG	phrog_16726	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101460_56	UniRef90	UniRef90_A0A3R6CIB5	HNH endonuclease	NA
UHGV-0101460_56	eggNOG-mapper	386415.NT01CX_1757	HNH endonuclease	NA
UHGV-0101460_56	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0101460_56	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0101460_56	Structural annotation	PF01844, NF040563, COG1403	NA	NA
UHGV-0101460_57	KOfam	K14059	int; integrase	NA
UHGV-0101460_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0101460_57	UniRef90	UniRef90_A0A412FH29	Integrase	NA
UHGV-0101460_57	eggNOG-mapper	397288.C806_00112	Belongs to the 'phage' integrase family	NA
UHGV-0101460_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0101460_57	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0101460_58	UniRef90	UniRef90_A0A0M6WU75	Spo0E family sporulation regulatory protein-aspartic acid phosphatase	NA