UHGV-0101472

Genome information

Genome length 37,390 bps

CDS count 53

Completeness 59.94% (medium-quality)

geNomad score 0.9684

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101472
vOTU ID	vOTU-016021
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_210483
BioSample	SAMEA3449325
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	59.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9684
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.85
Jumbo phage	No

Genome content
Genome length	37,390 bps
GC content	61.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.51%
Average CDS length	649.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101472_1	PHROG	phrog_538	minor tail protein	tail
UHGV-0101472_1	UniRef90	UniRef90_UPI001E54A5E5	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0101472_1	eggNOG-mapper	431943.CKL_4055	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0101472_1	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0101472_1	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0101472_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0101472_2	eggNOG-mapper	431943.CKL_4056	Phage tail protein	NA
UHGV-0101472_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0101472_2	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0101472_3	PHROG	phrog_7078	NA	unknown function
UHGV-0101472_3	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0101472_3	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0101472_8	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0101472_8	UniRef90	UniRef90_A0A4R7KWY0	SPP1 gp7 family putative phage head morphogenesis protein	NA
UHGV-0101472_8	eggNOG-mapper	397287.C807_03710	Type VI secretion system effector, Hcp	NA
UHGV-0101472_8	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0101472_8	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0101472_8	COG	COG3157	Type VI protein secretion system component Hcp (secreted cytotoxin)	NA
UHGV-0101472_8	Structural annotation	PF03496, PF04233, MF_04142, NF041404, TIGR01641, COG2369	NA	NA
UHGV-0101472_9	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0101472_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0101472_11	UniRef90	UniRef90_UPI001C1248D3	HK97 gp10 family phage protein	NA
UHGV-0101472_11	eggNOG-mapper	1294142.CINTURNW_1694	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0101472_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0101472_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0101472_11	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0101472_12	PHROG	phrog_2168	NA	unknown function
UHGV-0101472_12	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0101472_13	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0101472_13	UniRef90	UniRef90_A0A1V5KG52	Phage gp6-like head-tail connector protein	NA
UHGV-0101472_13	eggNOG-mapper	1294142.CINTURNW_1692	Phage gp6-like head-tail connector protein	NA
UHGV-0101472_13	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0101472_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0101472_13	Structural annotation	PF05135	NA	NA
UHGV-0101472_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0101472_15	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0101472_15	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0101472_16	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0101472_16	UniRef90	UniRef90_UPI0016821BB7	NA	NA
UHGV-0101472_16	eggNOG-mapper	1211844.CBLM010000016_gene1492	NA	NA
UHGV-0101472_16	Pfam	PF14265	NA	DUF4355
UHGV-0101472_16	Structural annotation	PF14265	NA	NA
UHGV-0101472_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-0101472_17	UniRef90	UniRef90_A0A1Y3PKI6	Phage portal protein	NA
UHGV-0101472_17	eggNOG-mapper	1121947.AUHK01000002_gene930	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0101472_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0101472_17	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0101472_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0101472_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0101472_18	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0101472_18	UniRef90	UniRef90_A0A2K9NYT9	Terminase large subunit	NA
UHGV-0101472_18	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0101472_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0101472_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0101472_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0101472_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0101472_18	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0101472_19	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0101472_19	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0101472_19	UniRef90	UniRef90_UPI0009ACA162	terminase small subunit	NA
UHGV-0101472_19	eggNOG-mapper	1122921.KB898199_gene2820	Terminase small subunit	NA
UHGV-0101472_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0101472_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0101472_19	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0101472_20	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0101472_20	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0101472_20	UniRef90	UniRef90_A0A173T1A3	YcfA-like protein	NA
UHGV-0101472_20	eggNOG-mapper	1235835.C814_03453	NA	NA
UHGV-0101472_20	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0101472_20	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0101472_21	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0101472_21	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0101472_21	UniRef90	UniRef90_R9J961	HicB-like domain-containing protein	NA
UHGV-0101472_21	eggNOG-mapper	397287.C807_02204	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0101472_21	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0101472_21	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0101472_21	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0101472_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0101472_22	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0101472_22	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0101472_23	PHROG	phrog_824	NA	unknown function
UHGV-0101472_23	UniRef90	UniRef90_A0A316PY60	VRR-NUC domain-containing protein	NA
UHGV-0101472_23	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0101472_23	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0101472_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0101472_24	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0101472_24	Structural annotation	PF21578	NA	NA
UHGV-0101472_28	PHROG	phrog_15609	NA	unknown function
UHGV-0101472_28	UniRef90	UniRef90_UPI0012D92A8B	NA	NA
UHGV-0101472_28	eggNOG-mapper	756499.Desde_1643	NA	NA
UHGV-0101472_28	Pfam	PF11300	NA	DUF3102
UHGV-0101472_28	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0101472_28	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0101472_29	PHROG	phrog_8470	NA	unknown function
UHGV-0101472_29	UniRef90	UniRef90_UPI0009F916E4	PcfJ domain-containing protein	NA
UHGV-0101472_29	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-0101472_29	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0101472_29	Structural annotation	PF14284	NA	NA
UHGV-0101472_30	eggNOG-mapper	1157490.EL26_01850	NA	NA
UHGV-0101472_30	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0101472_37	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0101472_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101472_37	UniRef90	UniRef90_A0A7D7VPE6	Helix-turn-helix domain-containing protein	NA
UHGV-0101472_37	eggNOG-mapper	608538.HTH_1322	PBP superfamily domain	NA
UHGV-0101472_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101472_37	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0101472_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0101472_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101472_38	UniRef90	UniRef90_A0A285IGH6	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0101472_38	eggNOG-mapper	926561.KB900622_gene674	PFAM Helix-turn-helix	NA
UHGV-0101472_38	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0101472_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101472_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0101472_40	eggNOG-mapper	1286171.EAL2_c05530	NA	NA
UHGV-0101472_42	PHROG	phrog_1847	NA	unknown function
UHGV-0101472_42	UniRef90	UniRef90_A0A143ZYV9	T5orf172 domain protein	NA
UHGV-0101472_42	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-0101472_42	Pfam	PF13250	NA	DUF4041
UHGV-0101472_42	Pfam	PF10544	T5orf172 domain	T5orf172
UHGV-0101472_42	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0101472_42	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-0101472_43	KOfam	K07075	NA	NA
UHGV-0101472_43	UniRef90	UniRef90_A0A3D4QXW9	Toxin-antitoxin system, antitoxin component	NA
UHGV-0101472_43	eggNOG-mapper	718252.FP2_31830	Nucleotidyltransferase substrate binding protein like	NA
UHGV-0101472_43	Pfam	PF18765	Polymerase beta, Nucleotidyltransferase	Polbeta
UHGV-0101472_43	Pfam	PF08780	Nucleotidyltransferase substrate binding protein like	NTase_sub_bind
UHGV-0101472_43	NCBIFam	TIGR01987.1	HI0074 family nucleotidyltransferase substrate-binding subunit	NA
UHGV-0101472_43	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-0101472_43	Structural annotation	PF08780, PF18765, TIGR01987, COG1669, COG2445	NA	NA
UHGV-0101472_44	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0101472_44	PHROG	phrog_95	integrase	integration and excision
UHGV-0101472_44	UniRef90	UniRef90_A0A4R3L3V9	Site-specific DNA recombinase	NA
UHGV-0101472_44	eggNOG-mapper	1128398.Curi_c13490	Resolvase, N terminal domain	NA
UHGV-0101472_44	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0101472_44	Pfam	PF07508	Recombinase	Recombinase
UHGV-0101472_44	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0101472_44	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0101472_44	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-0101472_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101472_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0101472_46	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0101472_46	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0101472_46	UniRef90	UniRef90_A0A845SYJ8	Methyltransferase	NA
UHGV-0101472_46	eggNOG-mapper	1378168.N510_03208	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0101472_46	PADLOC	MTase_II_00107	Type II methyltransferase	RM
UHGV-0101472_46	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0101472_46	COG	COG0863	DNA modification methylase	NA
UHGV-0101472_46	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0101472_47	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0101472_49	UniRef90	UniRef90_A0A1V5DPZ7	Bacterial SH3 domain protein	NA
UHGV-0101472_49	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0101472_49	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0101472_50	PHROG	phrog_30034	NA	unknown function
UHGV-0101472_50	UniRef90	UniRef90_R5QX84	Carbohydrate binding domain protein	NA
UHGV-0101472_50	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0101472_50	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0101472_50	Structural annotation	PF14600	NA	NA
UHGV-0101472_52	COG	COG3291	NA	NA
UHGV-0101472_52	Structural annotation	PF21722, PF13895, MF_04116, NF033814	NA	NA
UHGV-0101472_53	PHROG	phrog_5339	virion structural protein	head and packaging
UHGV-0101472_53	UniRef90	UniRef90_A0A0E0TFT0	Phage-related putative tail protein	NA
UHGV-0101472_53	eggNOG-mapper	767817.Desgi_4425	NA	NA
UHGV-0101472_53	Structural annotation	PF20747	NA	NA