UHGV-0101537

Genome information

Genome length 53,765 bps

CDS count 78

Completeness 90.19% (high-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101537
vOTU ID	vOTU-066173
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_216977
BioSample	SAMEA3541561
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.19% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.51
Jumbo phage	No

Genome content
Genome length	53,765 bps
GC content	38.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	87.50%
Average CDS length	606.00 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101537_2	PHROG	phrog_18444	NA	unknown function
UHGV-0101537_2	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0101537_2	eggNOG-mapper	1294142.CINTURNW_1043	NA	NA
UHGV-0101537_3	PHROG	phrog_6616	tail protein	tail
UHGV-0101537_3	UniRef90	UniRef90_A0A7G5N1A9	Tail fiber domain-containing protein	NA
UHGV-0101537_3	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0101537_3	COG	COG4926	Phage-related protein	NA
UHGV-0101537_3	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0101537_4	PHROG	phrog_1194	NA	unknown function
UHGV-0101537_4	eggNOG-mapper	1158607.UAU_01771	NA	NA
UHGV-0101537_4	Pfam	PF20458	NA	DUF6711
UHGV-0101537_4	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0101537_5	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0101537_5	UniRef90	UniRef90_A0A396PS29	SLT domain-containing protein	NA
UHGV-0101537_5	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0101537_5	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0101537_5	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0101537_8	PHROG	phrog_158	major tail protein	tail
UHGV-0101537_8	UniRef90	UniRef90_A0A173S6H2	Phage tail protein	NA
UHGV-0101537_8	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0101537_8	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0101537_8	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0101537_9	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0101537_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0101537_10	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0101537_10	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0101537_10	AcrCatalog	cluster_24841	NA	NA
UHGV-0101537_10	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0101537_11	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0101537_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0101537_12	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0101537_13	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0101537_13	UniRef90	UniRef90_UPI001D096CC5	NA	NA
UHGV-0101537_13	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0101537_13	Pfam	PF17236	NA	DUF5309
UHGV-0101537_13	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0101537_13	Structural annotation	PF17236, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-0101537_14	UniRef90	UniRef90_A0A7C7EK05	NA	NA
UHGV-0101537_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-0101537_15	UniRef90	UniRef90_UPI00156EA9F5	phage portal protein	NA
UHGV-0101537_15	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0101537_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0101537_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0101537_16	UniRef90	UniRef90_A0A173S6N5	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0101537_16	eggNOG-mapper	1232453.BAIF02000058_gene1624	NA	NA
UHGV-0101537_16	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0101537_17	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0101537_17	UniRef90	UniRef90_A0A415D4U9	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0101537_17	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0101537_17	COG	COG5410	NA	NA
UHGV-0101537_17	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0101537_18	eggNOG-mapper	469596.HMPREF9488_03215	NA	NA
UHGV-0101537_18	Structural annotation	PF16475	NA	NA
UHGV-0101537_20	UniRef90	UniRef90_A0A3E3JYB1	Conjugal transfer protein	NA
UHGV-0101537_20	eggNOG-mapper	1235790.C805_01029	Cysteine-rich KTR	NA
UHGV-0101537_20	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0101537_20	Structural annotation	PF14205	NA	NA
UHGV-0101537_21	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0101537_21	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-0101537_21	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0101537_21	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0101537_22	PHROG	phrog_1048	NA	unknown function
UHGV-0101537_22	UniRef90	UniRef90_A0A415D571	NA	NA
UHGV-0101537_22	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0101537_22	Pfam	PF11195	NA	DUF2829
UHGV-0101537_22	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0101537_22	Structural annotation	PF11195	NA	NA
UHGV-0101537_27	PHROG	phrog_1233	NA	unknown function
UHGV-0101537_27	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0101537_27	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0101537_30	Structural annotation	PF06004, NF033216, COG4568	NA	NA
UHGV-0101537_31	eggNOG-mapper	476272.RUMHYD_01907	NA	NA
UHGV-0101537_33	eggNOG-mapper	1235802.C823_02864	NA	NA
UHGV-0101537_34	PHROG	phrog_31631	NA	unknown function
UHGV-0101537_37	UniRef90	UniRef90_A0A893WAT2	J domain-containing protein	NA
UHGV-0101537_37	eggNOG-mapper	500632.CLONEX_04013	DnaJ molecular chaperone homology domain	NA
UHGV-0101537_37	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-0101537_37	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0101537_37	Structural annotation	PF18847	NA	NA
UHGV-0101537_41	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0101537_41	UniRef90	UniRef90_A0A173S9L2	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0101537_41	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0101537_41	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0101537_41	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0101537_41	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0101537_43	PHROG	phrog_8684	NA	unknown function
UHGV-0101537_43	UniRef90	UniRef90_A0A373MXN9	YopX domain-containing protein	NA
UHGV-0101537_43	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0101537_43	Pfam	PF09643	YopX protein	YopX
UHGV-0101537_43	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0101537_44	PHROG	phrog_20593	NA	unknown function
UHGV-0101537_44	UniRef90	UniRef90_UPI001C00A328	NA	NA
UHGV-0101537_44	eggNOG-mapper	483218.BACPEC_01161	NA	NA
UHGV-0101537_45	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0101537_45	UniRef90	UniRef90_A0A173SAG0	Restriction alleviation protein, Lar family	NA
UHGV-0101537_45	eggNOG-mapper	97139.C824_00027	Restriction alleviation protein Lar	NA
UHGV-0101537_45	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0101537_45	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0101537_45	Structural annotation	PF14354	NA	NA
UHGV-0101537_46	PHROG	phrog_2600	NA	unknown function
UHGV-0101537_46	UniRef90	UniRef90_A0A401UUL1	NA	NA
UHGV-0101537_46	eggNOG-mapper	1298920.KI911353_gene2720	NA	NA
UHGV-0101537_48	PHROG	phrog_4400	NA	unknown function
UHGV-0101537_48	UniRef90	UniRef90_A8ATU1	Gp53	NA
UHGV-0101537_48	eggNOG-mapper	357809.Cphy_2990	NA	NA
UHGV-0101537_48	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0101537_48	Structural annotation	PF01743, MF_00957, NF008634, COG0617	NA	NA
UHGV-0101537_50	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0101537_50	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0101537_50	UniRef90	UniRef90_A0A373MWF0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0101537_50	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0101537_50	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0101537_50	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0101537_50	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0101537_50	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0101537_51	UniRef90	UniRef90_A0A415H5C1	ASCH domain-containing protein	NA
UHGV-0101537_51	eggNOG-mapper	397290.C810_00411	ASCH domain	NA
UHGV-0101537_51	Pfam	PF04266	ASCH domain	ASCH
UHGV-0101537_51	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0101537_51	Structural annotation	PF08819, MF_00684, NF003443, COG4933	NA	NA
UHGV-0101537_53	PHROG	phrog_7488	NA	unknown function
UHGV-0101537_54	UniRef90	UniRef90_UPI0018979093	NA	NA
UHGV-0101537_54	eggNOG-mapper	1232453.BAIF02000086_gene329	NA	NA
UHGV-0101537_54	Pfam	PF14199	NA	DUF4317
UHGV-0101537_54	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0101537_55	UniRef90	UniRef90_K1S3Z4	RNA-directed DNA polymerase (Reverse transcriptase)	NA
UHGV-0101537_55	eggNOG-mapper	397291.C804_00976	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0101537_55	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0101537_58	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0101537_58	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0101537_58	UniRef90	UniRef90_UPI0018977FCD	AAA family ATPase	NA
UHGV-0101537_58	eggNOG-mapper	1232453.BAIF02000057_gene1145	DNA replication initiation	NA
UHGV-0101537_58	Pfam	PF13481	AAA domain	AAA_25
UHGV-0101537_58	COG	COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	NA
UHGV-0101537_58	Structural annotation	PF03796, PF16793, MF_01498, MF_00700, NF004109, NF040562, COG0305, COG1467	NA	NA
UHGV-0101537_59	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0101537_59	UniRef90	UniRef90_H6LCD1	Bacteriophage-like protein	NA
UHGV-0101537_59	eggNOG-mapper	1298920.KI911353_gene2714	DnaD domain protein	NA
UHGV-0101537_59	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0101537_59	Structural annotation	PF13463, TIGR01889, COG1846	NA	NA
UHGV-0101537_60	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0101537_60	UniRef90	UniRef90_A0A173SAL3	ERCC4 domain-containing protein	NA
UHGV-0101537_60	eggNOG-mapper	1232453.BAIF02000057_gene1143	NA	NA
UHGV-0101537_60	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0101537_60	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0101537_62	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0101537_62	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0101537_62	UniRef90	UniRef90_A0A173SC99	Single-stranded DNA-binding protein	NA
UHGV-0101537_62	eggNOG-mapper	1280698.AUJS01000040_gene2512	Single-strand binding protein family	NA
UHGV-0101537_62	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0101537_62	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0101537_62	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0101537_62	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0101537_62	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0101537_63	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0101537_63	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0101537_63	UniRef90	UniRef90_A0A173SAT3	Beta-lactamase superfamily domain	NA
UHGV-0101537_63	eggNOG-mapper	658655.HMPREF0988_00882	Metallo-beta-lactamase superfamily	NA
UHGV-0101537_63	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0101537_63	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0101537_63	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0101537_65	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0101537_65	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0101537_65	UniRef90	UniRef90_A0A1C5WMV6	p33	NA
UHGV-0101537_65	eggNOG-mapper	431943.CKL_0416	RecT family	NA
UHGV-0101537_65	Pfam	PF03837	RecT family	RecT
UHGV-0101537_65	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0101537_65	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0101537_65	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0101537_67	Structural annotation	PF19157	NA	NA
UHGV-0101537_69	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0101537_69	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101537_69	UniRef90	UniRef90_A0A173SB93	Chromosome segregation protein	NA
UHGV-0101537_69	eggNOG-mapper	1540257.JQMW01000013_gene763	nuclear chromosome segregation	NA
UHGV-0101537_69	Pfam	PF13555	P-loop containing region of AAA domain	AAA_29
UHGV-0101537_69	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0101537_69	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0101537_70	PHROG	phrog_4292	NA	unknown function
UHGV-0101537_72	Structural annotation	PF10743, NF040990	NA	NA
UHGV-0101537_73	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0101537_73	UniRef90	UniRef90_UPI0018972D4E	ORF6C domain-containing protein	NA
UHGV-0101537_73	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-0101537_73	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0101537_73	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0101537_73	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0101537_73	Structural annotation	PF10552, PF10543, TIGR02681, COG3943	NA	NA
UHGV-0101537_74	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101537_74	UniRef90	UniRef90_A0A373MWF5	XRE family transcriptional regulator	NA
UHGV-0101537_74	eggNOG-mapper	1304866.K413DRAFT_0833	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0101537_74	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101537_74	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0101537_75	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101537_75	UniRef90	UniRef90_A0A373MWG9	XRE family transcriptional regulator	NA
UHGV-0101537_75	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0101537_75	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101537_75	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0101537_75	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0101537_76	PHROG	phrog_87	metallo-protease	other
UHGV-0101537_76	UniRef90	UniRef90_UPI001C0252A2	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0101537_76	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0101537_76	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0101537_76	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0101537_76	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0101537_77	PHROG	phrog_806	NA	unknown function
UHGV-0101537_77	UniRef90	UniRef90_UPI00189741AE	NA	NA
UHGV-0101537_77	eggNOG-mapper	697329.Rumal_0454	NA	NA
UHGV-0101537_77	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0101537_77	Pfam	PF11611	NA	DUF4352
UHGV-0101537_77	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0101537_78	KOfam	K14059	int; integrase	NA
UHGV-0101537_78	PHROG	phrog_1	integrase	integration and excision
UHGV-0101537_78	UniRef90	UniRef90_R6SPW0	Tyr recombinase domain-containing protein	NA
UHGV-0101537_78	eggNOG-mapper	1235798.C817_04751	Belongs to the 'phage' integrase family	NA
UHGV-0101537_78	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0101537_78	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0101537_78	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA