UHGV-0101571

Genome information

Genome length 32,774 bps

CDS count 53

Completeness 97.24% (high-quality)

geNomad score 0.9710

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101571
vOTU ID	vOTU-064812
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_221537
BioSample	SAMEA3541508
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.24% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9710
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.71
Jumbo phage	No

Genome content
Genome length	32,774 bps
GC content	38.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.71%
Average CDS length	576.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101571_1	KOfam	K01738	cysK; cysteine synthase [EC:2.5.1.47]	NA
UHGV-0101571_1	PHROG	phrog_11528	NA	unknown function
UHGV-0101571_1	UniRef90	UniRef90_A0A3C0SMA9	Cysteine synthase A (Fragment)	NA
UHGV-0101571_1	eggNOG-mapper	1291050.JAGE01000001_gene1372	Belongs to the cysteine synthase cystathionine beta- synthase family	NA
UHGV-0101571_1	Pfam	PF00291	Pyridoxal-phosphate dependent enzyme	PALP
UHGV-0101571_1	COG	COG0031	Cysteine synthase	NA
UHGV-0101571_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0101571_2	UniRef90	UniRef90_UPI00189CA0E1	RNA polymerase subunit sigma-24	NA
UHGV-0101571_2	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0101571_2	Structural annotation	PF02996	NA	NA
UHGV-0101571_4	PHROG	phrog_24267	NA	unknown function
UHGV-0101571_4	UniRef90	UniRef90_A0A412AXT4	NA	NA
UHGV-0101571_4	eggNOG-mapper	658088.HMPREF0987_01104	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0101571_4	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0101571_4	COG	COG4675	Phage tail collar domain	NA
UHGV-0101571_4	Structural annotation	PF10651, NF040788, COG2372	NA	NA
UHGV-0101571_5	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0101571_5	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0101571_5	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0101571_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0101571_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0101571_5	COG	COG4926	Phage-related protein	NA
UHGV-0101571_5	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0101571_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0101571_6	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0101571_6	eggNOG-mapper	1497679.EP56_07715	tail component	NA
UHGV-0101571_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0101571_6	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0101571_7	PHROG	phrog_23464	NA	unknown function
UHGV-0101571_7	UniRef90	UniRef90_A0A1C6H5M9	Phage-related minor tail protein	NA
UHGV-0101571_7	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0101571_7	COG	COG5412	Phage-related protein	NA
UHGV-0101571_7	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-0101571_8	PHROG	phrog_3033	NA	unknown function
UHGV-0101571_8	UniRef90	UniRef90_A0A174UN01	Phage-like protein	NA
UHGV-0101571_8	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0101571_9	PHROG	phrog_709	NA	unknown function
UHGV-0101571_9	eggNOG-mapper	1410624.JNKK01000017_gene1983	NA	NA
UHGV-0101571_9	Structural annotation	PF11836	NA	NA
UHGV-0101571_10	PHROG	phrog_88	major tail protein	tail
UHGV-0101571_10	UniRef90	UniRef90_R9N908	Phi13 family phage major tail protein	NA
UHGV-0101571_10	eggNOG-mapper	1235798.C817_02573	phage major tail protein, phi13 family	NA
UHGV-0101571_10	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0101571_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0101571_10	Structural annotation	PF06488, PF18316, TIGR01603, COG3498	NA	NA
UHGV-0101571_11	PHROG	phrog_78	tail terminator	connector
UHGV-0101571_11	UniRef90	UniRef90_U2SBX3	HTH merR-type domain-containing protein	NA
UHGV-0101571_11	eggNOG-mapper	1408311.JNJM01000036_gene52	NA	NA
UHGV-0101571_11	Structural annotation	PF20765	NA	NA
UHGV-0101571_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0101571_12	UniRef90	UniRef90_A0A8J6PH82	HK97 gp10 family phage protein	NA
UHGV-0101571_12	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0101571_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0101571_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0101571_13	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0101571_13	UniRef90	UniRef90_A0A2V2GSS5	Phage head-tail adapter protein	NA
UHGV-0101571_13	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-0101571_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0101571_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0101571_14	PHROG	phrog_2550	NA	unknown function
UHGV-0101571_14	UniRef90	UniRef90_UPI001E35E63D	phage head-tail connector protein	NA
UHGV-0101571_14	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0101571_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0101571_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0101571_15	UniRef90	UniRef90_A0A1Y4R494	Phage major capsid protein	NA
UHGV-0101571_15	eggNOG-mapper	642492.Clole_0744	phage major capsid protein, HK97 family	NA
UHGV-0101571_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0101571_15	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0101571_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0101571_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0101571_15	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0101571_16	KOfam	K06904	NA	NA
UHGV-0101571_16	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0101571_16	UniRef90	UniRef90_A0A0D8IYC2	HK97 family phage prohead protease	NA
UHGV-0101571_16	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0101571_16	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0101571_16	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0101571_16	COG	COG3740	Phage head maturation protease	NA
UHGV-0101571_16	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0101571_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0101571_17	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0101571_17	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0101571_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0101571_17	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0101571_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0101571_17	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0101571_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0101571_18	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0101571_18	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0101571_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0101571_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0101571_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0101571_18	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0101571_19	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0101571_19	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0101571_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0101571_19	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0101571_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0101571_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0101571_21	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101571_21	UniRef90	UniRef90_A0A2V2GQ57	HNH endonuclease	NA
UHGV-0101571_21	eggNOG-mapper	1226322.HMPREF1545_00111	HNH nucleases	NA
UHGV-0101571_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0101571_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0101571_21	Structural annotation	TIGR02646	NA	NA
UHGV-0101571_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0101571_22	UniRef90	UniRef90_UPI001BB0884F	NA	NA
UHGV-0101571_22	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0101571_22	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0101571_24	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0101571_24	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0101571_24	Structural annotation	PF14354, PF02701, TIGR03655, NF041869, COG3478	NA	NA
UHGV-0101571_25	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0101571_25	UniRef90	UniRef90_A0A413DGU9	NA	NA
UHGV-0101571_25	eggNOG-mapper	1105031.HMPREF1141_1106	NA	NA
UHGV-0101571_25	Pfam	PF12961	NA	DUF3850
UHGV-0101571_25	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0101571_30	PHROG	phrog_7488	NA	unknown function
UHGV-0101571_30	Structural annotation	PF04319, PF08962	NA	NA
UHGV-0101571_31	PHROG	phrog_5444	NA	unknown function
UHGV-0101571_31	eggNOG-mapper	1239384.K4MPU6_9CAUD	NA	NA
UHGV-0101571_32	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0101571_32	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0101571_32	UniRef90	UniRef90_A0A1I1YTW5	dCTP deaminase, dUMP-forming	NA
UHGV-0101571_32	eggNOG-mapper	596329.HMPREF0631_0668	Belongs to the dCTP deaminase family	NA
UHGV-0101571_32	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0101571_32	COG	COG0717	dCTP deaminase	NA
UHGV-0101571_32	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0101571_33	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0101571_33	UniRef90	UniRef90_UPI0009300F02	helix-turn-helix transcriptional regulator	NA
UHGV-0101571_33	eggNOG-mapper	1128111.HMPREF0870_01603	DNA-binding helix-turn-helix protein	NA
UHGV-0101571_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101571_33	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0101571_33	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0101571_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101571_37	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0101571_37	UniRef90	UniRef90_A0A1C6FPW9	Superfamily II helicase and inactivated derivatives	NA
UHGV-0101571_37	eggNOG-mapper	1007096.BAGW01000023_gene149	NA	NA
UHGV-0101571_37	Pfam	PF06048	NA	DUF927
UHGV-0101571_37	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0101571_37	COG	COG5519	NA	NA
UHGV-0101571_37	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0101571_38	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0101571_38	PHROG	phrog_11992	NA	unknown function
UHGV-0101571_38	UniRef90	UniRef90_A0A2U1BEF8	CHC2-type zinc finger protein	NA
UHGV-0101571_38	eggNOG-mapper	1514668.JOOA01000002_gene2050	CHC2 zinc finger domain protein	NA
UHGV-0101571_38	PADLOC	drt-UG29	DRT	DRT
UHGV-0101571_38	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0101571_38	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0101571_38	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0101571_39	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0101571_39	UniRef90	UniRef90_A0A0M2NJW5	NA	NA
UHGV-0101571_39	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0101571_39	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0101571_39	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0101571_39	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0101571_40	PHROG	phrog_18107	NA	unknown function
UHGV-0101571_40	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0101571_40	Structural annotation	PF05037	NA	NA
UHGV-0101571_41	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0101571_41	UniRef90	UniRef90_A0A316RHU5	ATP-binding protein	NA
UHGV-0101571_41	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0101571_41	Pfam	PF13479	AAA domain	AAA_24
UHGV-0101571_41	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0101571_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101571_45	Structural annotation	PF20432, MF_00535, NF041951, COG1396	NA	NA
UHGV-0101571_46	Structural annotation	PF11023	NA	NA
UHGV-0101571_48	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0101571_48	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0101571_48	UniRef90	UniRef90_A0A7X8K9J4	Phage antirepressor Ant	NA
UHGV-0101571_48	eggNOG-mapper	1487921.DP68_11225	Phage antirepressor protein	NA
UHGV-0101571_48	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0101571_48	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0101571_48	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0101571_48	Structural annotation	PF08346, PF03374, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0101571_49	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0101571_49	UniRef90	UniRef90_A0A3A9EHD2	XRE family transcriptional regulator	NA
UHGV-0101571_49	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0101571_49	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0101571_49	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0101571_50	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0101571_50	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0101571_50	UniRef90	UniRef90_UPI000E4DDC44	XRE family transcriptional regulator	NA
UHGV-0101571_50	eggNOG-mapper	1507.HMPREF0262_00168	Peptidase S24-like	NA
UHGV-0101571_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101571_50	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0101571_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0101571_50	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, NF041951, COG2932	NA	NA
UHGV-0101571_51	PHROG	phrog_1914	NA	unknown function
UHGV-0101571_51	UniRef90	UniRef90_A0A3D4VT22	Peptidase_M78 domain-containing protein	NA
UHGV-0101571_51	eggNOG-mapper	445971.ANASTE_00176	IrrE N-terminal-like domain	NA
UHGV-0101571_51	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0101571_51	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0101571_51	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0101571_52	eggNOG-mapper	536233.CLO_0894	NA	NA
UHGV-0101571_53	KOfam	K14059	int; integrase	NA
UHGV-0101571_53	PHROG	phrog_1	integrase	integration and excision
UHGV-0101571_53	UniRef90	UniRef90_R6ZYN0	Site-specific recombinase phage integrase family	NA
UHGV-0101571_53	eggNOG-mapper	1095750.HMPREF9970_1688	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0101571_53	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0101571_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0101571_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0101571_53	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA