UHGV-0101582

Genome information

Genome length 38,729 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101582
vOTU ID	vOTU-009756
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_205890
BioSample	SAMEA3449186
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.35
Jumbo phage	No

Genome content
Genome length	38,729 bps
GC content	43.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	89.16%
Average CDS length	525.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101582_1	KOfam	K14059	int; integrase	NA
UHGV-0101582_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0101582_1	UniRef90	UniRef90_UPI001D05E1B3	site-specific integrase	NA
UHGV-0101582_1	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-0101582_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0101582_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0101582_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0101582_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0101582_2	eggNOG-mapper	1232453.BAIF02000097_gene2773	EXOIII	NA
UHGV-0101582_2	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0101582_2	Structural annotation	PF18899, NF007603, COG3586	NA	NA
UHGV-0101582_3	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0101582_3	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0101582_3	UniRef90	UniRef90_UPI00086376EB	3'-5' exoribonuclease	NA
UHGV-0101582_3	eggNOG-mapper	877424.ATWC01000001_gene2107	EXOIII	NA
UHGV-0101582_3	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0101582_3	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0101582_3	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0101582_3	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0101582_3	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0101582_3	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847, COG5275	NA	NA
UHGV-0101582_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0101582_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101582_4	UniRef90	UniRef90_UPI001D0634EC	helix-turn-helix domain-containing protein	NA
UHGV-0101582_4	eggNOG-mapper	397288.C806_00886	sequence-specific DNA binding	NA
UHGV-0101582_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101582_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0101582_4	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0101582_5	PHROG	phrog_1914	NA	unknown function
UHGV-0101582_5	UniRef90	UniRef90_UPI001D082E60	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0101582_5	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0101582_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0101582_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0101582_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0101582_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0101582_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101582_6	UniRef90	UniRef90_UPI001D077CC5	helix-turn-helix domain-containing protein	NA
UHGV-0101582_6	eggNOG-mapper	1042163.BRLA_c008000	sequence-specific DNA binding	NA
UHGV-0101582_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101582_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0101582_6	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0101582_7	UniRef90	UniRef90_W0U5F0	HTH cro/C1-type domain-containing protein	NA
UHGV-0101582_7	eggNOG-mapper	97139.C824_00056	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0101582_9	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0101582_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101582_9	UniRef90	UniRef90_U2KYQ8	DNA-binding helix-turn-helix protein	NA
UHGV-0101582_9	eggNOG-mapper	246199.CUS_5582	sequence-specific DNA binding	NA
UHGV-0101582_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101582_9	COG	COG1426	NA	NA
UHGV-0101582_9	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0101582_16	eggNOG-mapper	1160721.RBI_I01600	NA	NA
UHGV-0101582_16	AcrCatalog	cluster_136737	NA	NA
UHGV-0101582_17	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0101582_17	UniRef90	UniRef90_UPI001D098D7D	sporulation initiation factor Spo0A C-terminal domain-containing protein	NA
UHGV-0101582_17	eggNOG-mapper	1232447.BAHW02000023_gene1502	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0101582_17	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0101582_17	COG	COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	NA
UHGV-0101582_18	eggNOG-mapper	526218.Sterm_0798	NA	NA
UHGV-0101582_19	UniRef90	UniRef90_R6C4T1	Putative phage protein	NA
UHGV-0101582_19	eggNOG-mapper	929506.CbC4_1187	NA	NA
UHGV-0101582_20	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0101582_20	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0101582_20	UniRef90	UniRef90_UPI001D091C0C	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0101582_20	eggNOG-mapper	1291050.JAGE01000002_gene3264	sulfate reduction	NA
UHGV-0101582_20	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0101582_20	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0101582_20	Structural annotation	PF01507, MF_00064, NF010367, COG0175	NA	NA
UHGV-0101582_22	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0101582_22	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0101582_22	UniRef90	UniRef90_UPI001D0655D8	ParB/RepB/Spo0J family partition protein	NA
UHGV-0101582_22	eggNOG-mapper	1160721.RBI_I01596	ParB-like nuclease domain	NA
UHGV-0101582_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0101582_22	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0101582_22	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0101582_22	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0101582_24	PHROG	phrog_22040	NA	unknown function
UHGV-0101582_26	PHROG	phrog_9958	NA	unknown function
UHGV-0101582_26	UniRef90	UniRef90_A0A356CXW0	NA	NA
UHGV-0101582_26	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0101582_26	Structural annotation	PF19789	NA	NA
UHGV-0101582_27	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0101582_27	UniRef90	UniRef90_A0A173SGA9	Predicted HD-superfamily hydrolase	NA
UHGV-0101582_27	eggNOG-mapper	1219626.HMPREF1639_07345	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0101582_27	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0101582_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0101582_28	eggNOG-mapper	1160721.RBI_I01590	NA	NA
UHGV-0101582_28	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0101582_30	PHROG	phrog_6072	NA	unknown function
UHGV-0101582_32	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0101582_32	UniRef90	UniRef90_UPI001D08D4DA	NA	NA
UHGV-0101582_32	eggNOG-mapper	1329250.WOSG25_180420	NA	NA
UHGV-0101582_32	Pfam	PF12961	NA	DUF3850
UHGV-0101582_32	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0101582_33	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0101582_33	UniRef90	UniRef90_UPI001D08B1AD	Lar family restriction alleviation protein	NA
UHGV-0101582_33	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0101582_33	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0101582_33	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0101582_33	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0101582_34	PHROG	phrog_25754	NA	unknown function
UHGV-0101582_34	eggNOG-mapper	97139.C824_00736	NA	NA
UHGV-0101582_34	Structural annotation	PF18195, MF_00257, NF041655, COG1923	NA	NA
UHGV-0101582_35	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0101582_35	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0101582_35	UniRef90	UniRef90_UPI001D064C11	Lar family restriction alleviation protein	NA
UHGV-0101582_35	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0101582_35	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0101582_35	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0101582_35	Structural annotation	PF14354, NF007260, COG4888	NA	NA
UHGV-0101582_36	UniRef90	UniRef90_A0A843H1D7	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0101582_36	eggNOG-mapper	138119.DSY2187	DNA-templated transcription, initiation	NA
UHGV-0101582_36	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0101582_36	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-0101582_40	PHROG	phrog_1863	NA	unknown function
UHGV-0101582_40	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-0101582_41	PHROG	phrog_13256	NA	unknown function
UHGV-0101582_41	eggNOG-mapper	1160721.RBI_I01912	NA	NA
UHGV-0101582_42	KOfam	K07273	acm; lysozyme	NA
UHGV-0101582_42	PHROG	phrog_291	endolysin	lysis
UHGV-0101582_42	UniRef90	UniRef90_UPI001D06C0C4	glycoside hydrolase family 25 protein	NA
UHGV-0101582_42	eggNOG-mapper	877411.JMMA01000002_gene2608	hydrolase, family 25	NA
UHGV-0101582_42	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0101582_42	Pfam	PF01476	LysM domain	LysM
UHGV-0101582_42	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0101582_42	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0101582_43	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0101582_43	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0101582_43	UniRef90	UniRef90_UPI001D08E9BA	terminase small subunit	NA
UHGV-0101582_43	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-0101582_43	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0101582_43	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0101582_43	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0101582_45	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0101582_45	UniRef90	UniRef90_UPI001D081691	HNH endonuclease	NA
UHGV-0101582_45	eggNOG-mapper	97138.C820_00619	HNH endonuclease	NA
UHGV-0101582_45	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0101582_45	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0101582_45	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0101582_47	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0101582_47	UniRef90	UniRef90_UPI001D06D46F	terminase large subunit	NA
UHGV-0101582_47	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0101582_47	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0101582_47	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0101582_47	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0101582_47	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0101582_49	PHROG	phrog_12	portal protein	head and packaging
UHGV-0101582_49	UniRef90	UniRef90_UPI001D078F56	phage portal protein	NA
UHGV-0101582_49	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0101582_49	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0101582_49	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0101582_49	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0101582_50	KOfam	K06904	NA	NA
UHGV-0101582_50	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0101582_50	UniRef90	UniRef90_UPI001D09432B	HK97 family phage prohead protease	NA
UHGV-0101582_50	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-0101582_50	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0101582_50	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0101582_50	COG	COG3740	Phage head maturation protease	NA
UHGV-0101582_50	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0101582_51	PHROG	phrog_10	major head protein	head and packaging
UHGV-0101582_51	UniRef90	UniRef90_UPI001D08CA0B	phage major capsid protein	NA
UHGV-0101582_51	eggNOG-mapper	1157490.EL26_20710	Phage capsid family	NA
UHGV-0101582_51	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0101582_51	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0101582_51	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0101582_51	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0101582_52	UniRef90	UniRef90_A0A645AVJ0	S-l_SbsC_C domain-containing protein	NA
UHGV-0101582_52	eggNOG-mapper	86416.Clopa_0341	Phage capsid family	NA
UHGV-0101582_52	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0101582_52	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0101582_52	Structural annotation	PF18316	NA	NA
UHGV-0101582_53	UniRef90	UniRef90_UPI001D07D95D	phage head-tail connector protein	NA
UHGV-0101582_53	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0101582_53	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0101582_53	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0101582_54	UniRef90	UniRef90_R6Z5T8	Putative phage head-tail adaptor	NA
UHGV-0101582_54	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0101582_54	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0101582_55	Structural annotation	TIGR01725	NA	NA
UHGV-0101582_56	Structural annotation	PF05657	NA	NA
UHGV-0101582_57	PHROG	phrog_88	major tail protein	tail
UHGV-0101582_57	UniRef90	UniRef90_A0A843HLZ4	Ig-like domain-containing protein	NA
UHGV-0101582_57	eggNOG-mapper	1403313.AXBR01000002_gene4319	phage major tail protein, phi13 family	NA
UHGV-0101582_57	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0101582_57	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0101582_57	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0101582_59	PHROG	phrog_23464	NA	unknown function
UHGV-0101582_59	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0101582_59	COG	COG5283	Phage-related tail protein	NA
UHGV-0101582_59	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0101582_60	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0101582_60	UniRef90	UniRef90_UPI001D088A46	phage tail family protein	NA
UHGV-0101582_60	eggNOG-mapper	742740.HMPREF9474_02261	Phage tail protein	NA
UHGV-0101582_60	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0101582_60	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0101582_61	PHROG	phrog_538	minor tail protein	tail
UHGV-0101582_61	UniRef90	UniRef90_UPI001D076D06	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0101582_61	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0101582_61	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0101582_61	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0101582_62	PHROG	phrog_1220	head protein	head and packaging
UHGV-0101582_62	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-0101582_62	Structural annotation	PF16569, PF21567	NA	NA
UHGV-0101582_65	KOfam	K03664	smpB; SsrA-binding protein	NA
UHGV-0101582_65	PHROG	phrog_6791	NA	unknown function
UHGV-0101582_65	UniRef90	UniRef90_R6CBA1	SsrA-binding protein	NA
UHGV-0101582_65	eggNOG-mapper	1160721.RBI_I01562	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA	NA
UHGV-0101582_65	Pfam	PF01668	SmpB protein	SmpB
UHGV-0101582_65	NCBIFam	NF003843.0	SsrA-binding protein SmpB	NA
UHGV-0101582_65	COG	COG0691	tmRNA-binding protein	NA
UHGV-0101582_65	HAMAP	MF_00023	SsrA-binding protein [smpB]	NA
UHGV-0101582_65	Structural annotation	PF01668, MF_00023, NF003843, COG0691	NA	NA
UHGV-0101582_66	eggNOG-mapper	397291.C804_02706	NA	NA
UHGV-0101582_66	Pfam	PF07791	NA	DUF1629