UHGV-0101607

Genome information

Genome length 33,034 bps

CDS count 41

Completeness 88.78% (medium-quality)

geNomad score 0.9653

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101607
vOTU ID	vOTU-038574
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_226630
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9653
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.94
Jumbo phage	No

Genome content
Genome length	33,034 bps
GC content	39.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	88.79%
Average CDS length	717.22 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101607_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0101607_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0101607_1	UniRef90	UniRef90_A0A413YU13	Recombinase family protein	NA
UHGV-0101607_1	eggNOG-mapper	658088.HMPREF0987_00026	Recombinase	NA
UHGV-0101607_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0101607_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0101607_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0101607_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0101607_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0101607_2	PHROG	phrog_2695	NA	unknown function
UHGV-0101607_2	UniRef90	UniRef90_A0A174PBX4	SIR2_2 domain-containing protein	NA
UHGV-0101607_2	eggNOG-mapper	1504823.CCMM01000008_gene1082	NAD+ binding	NA
UHGV-0101607_2	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-0101607_2	Pfam	PF13289	SIR2-like domain	SIR2_2
UHGV-0101607_2	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-0101607_2	Structural annotation	PF13289	NA	NA
UHGV-0101607_3	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0101607_3	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101607_3	UniRef90	UniRef90_A0A3E5EK59	Type I site-specific deoxyribonuclease	NA
UHGV-0101607_3	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0101607_3	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0101607_3	COG	COG4748	NA	NA
UHGV-0101607_3	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0101607_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0101607_4	UniRef90	UniRef90_R6A4U7	DNA-binding protein	NA
UHGV-0101607_4	eggNOG-mapper	585501.HMPREF6123_0867	carbohydrate binding	NA
UHGV-0101607_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101607_4	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-0101607_4	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0101607_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0101607_5	UniRef90	UniRef90_UPI000E7391FB	helix-turn-helix domain-containing protein	NA
UHGV-0101607_5	eggNOG-mapper	1378168.N510_01092	sequence-specific DNA binding	NA
UHGV-0101607_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101607_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0101607_9	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0101607_9	UniRef90	UniRef90_UPI001C3AECD3	NA	NA
UHGV-0101607_9	eggNOG-mapper	397288.C806_00086	NA	NA
UHGV-0101607_9	Pfam	PF14359	NA	DUF4406
UHGV-0101607_9	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0101607_11	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0101607_11	UniRef90	UniRef90_UPI00189D84FA	replication terminator protein	NA
UHGV-0101607_11	eggNOG-mapper	1298920.KI911353_gene2719	NA	NA
UHGV-0101607_12	PHROG	phrog_1029	NA	unknown function
UHGV-0101607_12	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0101607_12	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0101607_12	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0101607_16	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0101607_16	UniRef90	UniRef90_K2PHK9	Phage replication protein	NA
UHGV-0101607_16	eggNOG-mapper	1231377.C426_1702	dnaD_dom DnaD domain protein	NA
UHGV-0101607_16	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0101607_16	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0101607_17	UniRef90	UniRef90_UPI001F41082E	NA	NA
UHGV-0101607_17	eggNOG-mapper	411470.RUMGNA_02039	NA	NA
UHGV-0101607_19	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0101607_19	eggNOG-mapper	1235793.C809_02210	NA	NA
UHGV-0101607_21	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0101607_21	PHROG	phrog_216	integrase	integration and excision
UHGV-0101607_21	UniRef90	UniRef90_A0A356C4M9	Tyr recombinase domain-containing protein	NA
UHGV-0101607_21	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-0101607_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0101607_21	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0101607_21	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0101607_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0101607_22	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-0101607_22	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0101607_23	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0101607_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101607_23	UniRef90	UniRef90_UPI001AE1B45B	HNH endonuclease	NA
UHGV-0101607_23	eggNOG-mapper	1111134.HMPREF1253_0388	HNH nucleases	NA
UHGV-0101607_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0101607_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0101607_24	PHROG	phrog_1066	NA	unknown function
UHGV-0101607_24	eggNOG-mapper	318464.IO99_13770	NA	NA
UHGV-0101607_24	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0101607_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0101607_25	UniRef90	UniRef90_R6M9L9	Terminase	NA
UHGV-0101607_25	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0101607_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0101607_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0101607_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0101607_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0101607_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0101607_26	UniRef90	UniRef90_A0A1T4XJH4	Phage portal protein, HK97 family	NA
UHGV-0101607_26	eggNOG-mapper	931276.Cspa_c10150	Portal protein	NA
UHGV-0101607_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0101607_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0101607_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0101607_27	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0101607_27	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0101607_27	UniRef90	UniRef90_R6DK29	Gp4	NA
UHGV-0101607_27	eggNOG-mapper	330396.A8AT97_9CAUD	Clp protease	NA
UHGV-0101607_27	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0101607_27	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0101607_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0101607_28	UniRef90	UniRef90_A0A355RXP5	Phage major capsid protein	NA
UHGV-0101607_28	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0101607_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0101607_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0101607_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0101607_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0101607_29	PHROG	phrog_5223	neck protein	connector
UHGV-0101607_29	UniRef90	UniRef90_A0A3D2X9T8	DNA-packaging protein	NA
UHGV-0101607_29	eggNOG-mapper	318464.IO99_13745	NA	NA
UHGV-0101607_29	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0101607_30	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0101607_30	UniRef90	UniRef90_UPI00189900AB	phage head closure protein	NA
UHGV-0101607_30	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0101607_30	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0101607_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0101607_31	UniRef90	UniRef90_A0A829NR05	HK97 gp10 family phage protein	NA
UHGV-0101607_31	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0101607_31	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0101607_31	Structural annotation	TIGR01725	NA	NA
UHGV-0101607_32	PHROG	phrog_78	tail terminator	connector
UHGV-0101607_32	UniRef90	UniRef90_UPI000E471C89	phage tail protein	NA
UHGV-0101607_32	eggNOG-mapper	1123075.AUDP01000020_gene1517	NA	NA
UHGV-0101607_32	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0101607_33	PHROG	phrog_88	major tail protein	tail
UHGV-0101607_33	UniRef90	UniRef90_A0A2Z4I5B9	Phage tail protein	NA
UHGV-0101607_33	eggNOG-mapper	879310.HMPREF9162_1698	Phage major tail protein, phi13 family	NA
UHGV-0101607_33	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0101607_33	COG	COG5492	NA	NA
UHGV-0101607_33	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0101607_35	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0101607_35	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0101607_35	UniRef90	UniRef90_A0A412UTH9	Phage tail tape measure protein	NA
UHGV-0101607_35	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-0101607_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0101607_35	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0101607_35	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0101607_35	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0101607_36	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0101607_36	UniRef90	UniRef90_A0A316MDV8	Phage tail protein	NA
UHGV-0101607_36	eggNOG-mapper	457396.CSBG_01058	phage tail	NA
UHGV-0101607_36	COG	COG4722	Phage-related protein YomH	NA
UHGV-0101607_36	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0101607_38	PHROG	phrog_1401	NA	unknown function
UHGV-0101607_38	eggNOG-mapper	1294142.CINTURNW_1705	NA	NA
UHGV-0101607_38	Structural annotation	PF07761	NA	NA
UHGV-0101607_39	PHROG	phrog_18110	NA	unknown function
UHGV-0101607_39	UniRef90	UniRef90_A0A356C4L7	Peptidase S74 domain-containing protein	NA
UHGV-0101607_39	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0101607_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0101607_39	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0101607_39	COG	COG4926	Phage-related protein	NA
UHGV-0101607_39	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0101607_40	PHROG	phrog_199	holin	lysis
UHGV-0101607_40	UniRef90	UniRef90_A0A3D5LSL4	Holin	NA
UHGV-0101607_40	eggNOG-mapper	397290.C810_00438	Bacteriophage holin family	NA
UHGV-0101607_40	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0101607_40	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0101607_40	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0101607_40	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0101607_41	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0101607_41	PHROG	phrog_435	endolysin	lysis
UHGV-0101607_41	UniRef90	UniRef90_A0A844DYE7	MurNAc-LAA domain-containing protein	NA
UHGV-0101607_41	eggNOG-mapper	1408437.JNJN01000039_gene391	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0101607_41	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0101607_41	Pfam	PF13946	NA	DUF4214
UHGV-0101607_41	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0101607_41	Structural annotation	PF01520, PF13946, MF_00417, TIGR02883, COG0860	NA	NA