UHGV-0101733

Genome information

Genome length 44,012 bps

CDS count 53

Completeness 95.80% (high-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101733
vOTU ID	vOTU-064220
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_227383
BioSample	SAMEA3708601
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.80% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.86
Jumbo phage	No

Genome content
Genome length	44,012 bps
GC content	41.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.50%
Average CDS length	761.94 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101733_1	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0101733_1	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-0101733_1	UniRef90	UniRef90_UPI0015F455B4	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0101733_1	eggNOG-mapper	411474.COPEUT_02341	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	NA
UHGV-0101733_1	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0101733_1	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-0101733_1	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0101733_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0101733_1	Structural annotation	PF07638, MF_00245, TIGR02954, COG1595	NA	NA
UHGV-0101733_3	KOfam	K14059	int; integrase	NA
UHGV-0101733_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0101733_3	UniRef90	UniRef90_A0A412L7T7	Site-specific integrase	NA
UHGV-0101733_3	eggNOG-mapper	1540257.JQMW01000011_gene2033	Phage integrase family	NA
UHGV-0101733_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0101733_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0101733_3	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0101733_4	PHROG	phrog_3243	NA	unknown function
UHGV-0101733_4	eggNOG-mapper	1121904.ARBP01000046_gene1866	NA	NA
UHGV-0101733_4	Structural annotation	PF15072, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0101733_5	PHROG	phrog_87	metallo-protease	other
UHGV-0101733_5	UniRef90	UniRef90_A0A1Y4S739	Peptidase_M78 domain-containing protein	NA
UHGV-0101733_5	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-0101733_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0101733_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0101733_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101733_6	UniRef90	UniRef90_A0A413K864	XRE family transcriptional regulator	NA
UHGV-0101733_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0101733_6	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0101733_7	eggNOG-mapper	97138.C820_00203	Transcriptional	NA
UHGV-0101733_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0101733_9	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0101733_11	PHROG	phrog_9576	NA	unknown function
UHGV-0101733_11	UniRef90	UniRef90_R9IFP8	YozE_SAM_like domain-containing protein	NA
UHGV-0101733_11	eggNOG-mapper	689781.AUJX01000031_gene124	NA	NA
UHGV-0101733_12	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0101733_12	PHROG	phrog_1499	NA	unknown function
UHGV-0101733_12	UniRef90	UniRef90_A0A2N0UXU2	Chromosome segregation protein	NA
UHGV-0101733_12	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0101733_12	Pfam	PF13476	AAA domain	AAA_23
UHGV-0101733_12	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0101733_12	Structural annotation	TIGR03185, COG5293	NA	NA
UHGV-0101733_14	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0101733_14	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-0101733_14	eggNOG-mapper	1123304.AQYA01000037_gene196	AAA domain	NA
UHGV-0101733_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0101733_14	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0101733_15	PHROG	phrog_2698	NA	unknown function
UHGV-0101733_15	UniRef90	UniRef90_UPI000F54335B	NA	NA
UHGV-0101733_15	eggNOG-mapper	742723.HMPREF9477_00927	NA	NA
UHGV-0101733_15	Structural annotation	PF17426, NF005674	NA	NA
UHGV-0101733_16	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0101733_16	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0101733_16	UniRef90	UniRef90_A0A412ULZ3	ATP-dependent helicase	NA
UHGV-0101733_16	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0101733_16	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0101733_16	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0101733_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0101733_16	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0101733_16	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0101733_17	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0101733_17	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0101733_17	UniRef90	UniRef90_A0A2N0UXP7	Regulatory protein RepA	NA
UHGV-0101733_17	eggNOG-mapper	394503.Ccel_3304	Primase C terminal 2 (PriCT-2)	NA
UHGV-0101733_17	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0101733_17	Pfam	PF13481	AAA domain	AAA_25
UHGV-0101733_17	COG	COG3598	RecA-family ATPase	NA
UHGV-0101733_17	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0101733_18	PHROG	phrog_16687	NA	unknown function
UHGV-0101733_18	eggNOG-mapper	1123511.KB905868_gene197	NA	NA
UHGV-0101733_19	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0101733_19	UniRef90	UniRef90_A0A2N0UXU6	Holliday junction resolvase	NA
UHGV-0101733_19	eggNOG-mapper	411462.DORLON_00806	Endodeoxyribonuclease RusA	NA
UHGV-0101733_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0101733_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0101733_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0101733_20	Structural annotation	PF02559, MF_00667, TIGR02861	NA	NA
UHGV-0101733_22	PHROG	phrog_5051	NA	unknown function
UHGV-0101733_22	UniRef90	UniRef90_Q9AZ97	Orf197	NA
UHGV-0101733_22	eggNOG-mapper	257314.LJ_1445	NA	NA
UHGV-0101733_23	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0101733_23	UniRef90	UniRef90_A0A2N0ULX9	Methyltransf_11 domain-containing protein	NA
UHGV-0101733_23	eggNOG-mapper	1284352.AOIG01000022_gene3791	methyltransferase	NA
UHGV-0101733_23	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0101733_23	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0101733_23	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0101733_23	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0101733_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0101733_24	UniRef90	UniRef90_A0A2N0UXQ6	NA	NA
UHGV-0101733_24	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-0101733_24	Pfam	PF07374	NA	DUF1492
UHGV-0101733_24	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0101733_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0101733_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0101733_25	UniRef90	UniRef90_A0A2N0ULW5	Phage terminase, large subunit, PBSX family	NA
UHGV-0101733_25	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0101733_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0101733_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0101733_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0101733_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0101733_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0101733_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0101733_26	UniRef90	UniRef90_A0A2N0ULU9	Phage portal protein, putative, A118 family	NA
UHGV-0101733_26	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0101733_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0101733_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0101733_27	UniRef90	UniRef90_A0A2N0ULU5	Putative ADP-ribosyltransferase Certhrax	NA
UHGV-0101733_27	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0101733_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0101733_27	COG	COG2369	NA	NA
UHGV-0101733_27	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0101733_29	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0101733_29	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0101733_29	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0101733_30	PHROG	phrog_2616	NA	unknown function
UHGV-0101733_30	Structural annotation	PF01281	NA	NA
UHGV-0101733_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0101733_31	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-0101733_31	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0101733_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0101733_31	Structural annotation	PF06810	NA	NA
UHGV-0101733_32	PHROG	phrog_544	major head protein	head and packaging
UHGV-0101733_32	UniRef90	UniRef90_UPI000F53CC4F	N4-gp56 family major capsid protein	NA
UHGV-0101733_32	eggNOG-mapper	936580.HMPREF1516_0718	NA	NA
UHGV-0101733_32	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0101733_32	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0101733_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0101733_33	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0101733_33	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0101733_34	PHROG	phrog_3366	NA	unknown function
UHGV-0101733_34	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0101733_34	Pfam	PF20536	NA	DUF6751
UHGV-0101733_34	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0101733_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0101733_35	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-0101733_35	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0101733_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0101733_35	Structural annotation	PF11114	NA	NA
UHGV-0101733_36	PHROG	phrog_3266	tail completion	connector
UHGV-0101733_36	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0101733_36	Structural annotation	PF20765	NA	NA
UHGV-0101733_37	PHROG	phrog_3099	NA	unknown function
UHGV-0101733_37	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0101733_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0101733_38	PHROG	phrog_11299	NA	unknown function
UHGV-0101733_38	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0101733_38	Structural annotation	PF10666	NA	NA
UHGV-0101733_39	PHROG	phrog_706	NA	unknown function
UHGV-0101733_39	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-0101733_39	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0101733_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0101733_39	Structural annotation	PF06854	NA	NA
UHGV-0101733_41	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0101733_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0101733_42	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-0101733_42	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0101733_42	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0101733_42	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0101733_43	PHROG	phrog_1194	NA	unknown function
UHGV-0101733_43	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0101733_43	Pfam	PF20458	NA	DUF6711
UHGV-0101733_43	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0101733_44	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0101733_45	PHROG	phrog_5302	tail protein	tail
UHGV-0101733_45	UniRef90	UniRef90_A0A373XLZ6	NA	NA
UHGV-0101733_45	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0101733_45	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0101733_45	Structural annotation	COG1262	NA	NA
UHGV-0101733_47	PHROG	phrog_1009	NA	unknown function
UHGV-0101733_47	UniRef90	UniRef90_A0A373XMY3	Branched-chain amino acid ABC transporter permease	NA
UHGV-0101733_47	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0101733_48	PHROG	phrog_881	holin	lysis
UHGV-0101733_48	UniRef90	UniRef90_R7EEV6	Conserved domain protein	NA
UHGV-0101733_48	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0101733_48	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0101733_48	Structural annotation	PF16938	NA	NA
UHGV-0101733_49	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0101733_49	PHROG	phrog_1794	amidase	lysis
UHGV-0101733_49	UniRef90	UniRef90_A0A373KFY8	SH3b domain-containing protein	NA
UHGV-0101733_49	eggNOG-mapper	573061.Clocel_3960	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0101733_49	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0101733_49	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0101733_49	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-0101733_50	KOfam	K07271	licD; lipopolysaccharide cholinephosphotransferase [EC:2.7.8.-]	NA
UHGV-0101733_50	UniRef90	UniRef90_A0A3D3D7N5	Epimerase domain-containing protein	NA
UHGV-0101733_50	eggNOG-mapper	697329.Rumal_2992	LicD family	NA
UHGV-0101733_50	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-0101733_50	Pfam	PF04991	LicD family	LicD
UHGV-0101733_50	COG	COG3475	Phosphorylcholine metabolism protein LicD	NA
UHGV-0101733_51	KOfam	K08678	UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35]	NA
UHGV-0101733_51	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-0101733_51	UniRef90	UniRef90_A0A2N0UQV5	dTDP-glucose 4,6-dehydratase	NA
UHGV-0101733_51	eggNOG-mapper	397287.C807_01090	Male sterility protein	NA
UHGV-0101733_51	Pfam	PF01370	NAD dependent epimerase/dehydratase family	Epimerase
UHGV-0101733_51	COG	COG0451	Nucleoside-diphosphate-sugar epimerase	NA
UHGV-0101733_51	Structural annotation	PF16363, MF_01166, TIGR01181, COG0451	NA	NA
UHGV-0101733_52	KOfam	K09691	wzt, rbfB; lipopolysaccharide transport system ATP-binding protein	NA
UHGV-0101733_52	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0101733_52	UniRef90	UniRef90_A0A2N0UQV4	Teichoic acids export ATP-binding protein TagH	NA
UHGV-0101733_52	eggNOG-mapper	1160721.RBI_I00539	NA	NA
UHGV-0101733_52	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0101733_52	COG	COG1134	ABC-type polysaccharide/polyol phosphate transport system, ATPase component	NA
UHGV-0101733_53	KOfam	K09692	tagG; teichoic acid transport system permease protein	NA
UHGV-0101733_53	UniRef90	UniRef90_A0A374DLZ3	ABC2_membrane domain-containing protein	NA
UHGV-0101733_53	eggNOG-mapper	1160721.RBI_I00538	ABC-2 type transporter	NA
UHGV-0101733_53	COG	COG1682	ABC-type polysaccharide/teichoic acid/polyol phosphate export permease	NA