UHGV-0101763

Genome information

Genome length 36,942 bps

CDS count 56

Completeness 98.50% (high-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101763
vOTU ID	vOTU-077091
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_216771
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.50% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.61
Jumbo phage	No

Genome content
Genome length	36,942 bps
GC content	40.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.59%
Average CDS length	615.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101763_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0101763_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0101763_1	UniRef90	UniRef90_A0A414S2T5	Recombinase family protein	NA
UHGV-0101763_1	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0101763_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0101763_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0101763_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0101763_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0101763_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0101763_2	eggNOG-mapper	411461.DORFOR_00034	NA	NA
UHGV-0101763_2	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0101763_3	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0101763_3	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101763_3	UniRef90	UniRef90_A0A173VG58	Endonuclease	NA
UHGV-0101763_3	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0101763_3	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0101763_3	COG	COG4748	NA	NA
UHGV-0101763_3	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0101763_4	PHROG	phrog_20886	NA	unknown function
UHGV-0101763_4	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0101763_4	eggNOG-mapper	411462.DORLON_00820	NA	NA
UHGV-0101763_4	Structural annotation	PF06114	NA	NA
UHGV-0101763_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0101763_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101763_5	UniRef90	UniRef90_A0A173VG78	Helix-turn-helix domain-containing protein	NA
UHGV-0101763_5	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0101763_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101763_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0101763_5	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0101763_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101763_6	UniRef90	UniRef90_A0A173VG88	Helix-turn-helix domain	NA
UHGV-0101763_6	eggNOG-mapper	552396.HMPREF0863_02446	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0101763_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101763_6	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0101763_8	UniRef90	UniRef90_A0A352P178	zinc_ribbon_2 domain-containing protein (Fragment)	NA
UHGV-0101763_8	Structural annotation	PF13248	NA	NA
UHGV-0101763_9	PHROG	phrog_16447	NA	unknown function
UHGV-0101763_9	UniRef90	UniRef90_UPI0014850D73	NA	NA
UHGV-0101763_9	eggNOG-mapper	272562.CA_C1943	NA	NA
UHGV-0101763_9	Pfam	PF10083	NA	DUF2321
UHGV-0101763_9	COG	COG4306	NA	NA
UHGV-0101763_9	Structural annotation	PF10083, COG4306	NA	NA
UHGV-0101763_10	PHROG	phrog_32168	NA	unknown function
UHGV-0101763_13	eggNOG-mapper	411462.DORLON_00814	NA	NA
UHGV-0101763_14	PHROG	phrog_3777	NA	unknown function
UHGV-0101763_14	UniRef90	UniRef90_UPI00156DC22E	NA	NA
UHGV-0101763_14	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0101763_14	Pfam	PF12957	NA	DUF3846
UHGV-0101763_14	Structural annotation	PF12957	NA	NA
UHGV-0101763_17	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101763_17	UniRef90	UniRef90_A0A1Q6PRD9	Recombinase	NA
UHGV-0101763_17	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-0101763_17	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0101763_17	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0101763_17	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0101763_17	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0101763_18	PHROG	phrog_674	NA	unknown function
UHGV-0101763_18	UniRef90	UniRef90_A0A845KID5	NA	NA
UHGV-0101763_18	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0101763_18	Pfam	PF07083	NA	DUF1351
UHGV-0101763_18	Structural annotation	PF07083	NA	NA
UHGV-0101763_19	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0101763_19	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0101763_19	UniRef90	UniRef90_A0A174JN35	p33	NA
UHGV-0101763_19	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0101763_19	Pfam	PF03837	RecT family	RecT
UHGV-0101763_19	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0101763_19	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0101763_19	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0101763_20	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0101763_20	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0101763_21	PHROG	phrog_1029	NA	unknown function
UHGV-0101763_21	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0101763_21	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0101763_22	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0101763_22	UniRef90	UniRef90_A0A174JQ61	Holliday junction resolvase	NA
UHGV-0101763_22	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0101763_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0101763_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0101763_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0101763_23	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0101763_23	UniRef90	UniRef90_A0A174JN05	NA	NA
UHGV-0101763_23	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0101763_23	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0101763_23	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0101763_23	Structural annotation	PF14297	NA	NA
UHGV-0101763_25	PHROG	phrog_11564	DNA methyltransferase	other
UHGV-0101763_25	UniRef90	UniRef90_UPI00156F6AA5	methyltransferase domain-containing protein	NA
UHGV-0101763_25	eggNOG-mapper	1347393.HG726022_gene3574	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0101763_25	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0101763_25	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0101763_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0101763_28	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0101763_28	Structural annotation	PF02996	NA	NA
UHGV-0101763_29	UniRef90	UniRef90_UPI00111142DD	toll/interleukin-1 receptor domain-containing protein	NA
UHGV-0101763_29	eggNOG-mapper	1408473.JHXO01000001_gene1973	TIR domain	NA
UHGV-0101763_29	Pfam	PF13676	TIR domain	TIR_2
UHGV-0101763_29	COG	COG4916	NA	NA
UHGV-0101763_29	Structural annotation	PF13676, PF06483, NF040588, COG4916	NA	NA
UHGV-0101763_30	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0101763_30	UniRef90	UniRef90_A0A391P905	DNA-binding protein	NA
UHGV-0101763_30	eggNOG-mapper	411461.DORFOR_00751	DNA packaging	NA
UHGV-0101763_30	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0101763_30	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0101763_30	COG	COG5484	NA	NA
UHGV-0101763_30	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0101763_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0101763_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0101763_31	UniRef90	UniRef90_B0G3C9	Phage terminase, large subunit, PBSX family	NA
UHGV-0101763_31	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0101763_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0101763_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0101763_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0101763_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0101763_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0101763_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0101763_32	UniRef90	UniRef90_A6BES5	Phage minor capsid protein	NA
UHGV-0101763_32	eggNOG-mapper	411462.DORLON_00795	COG NOG25118 non supervised orthologous group	NA
UHGV-0101763_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0101763_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0101763_33	PHROG	phrog_21033	NA	unknown function
UHGV-0101763_33	UniRef90	UniRef90_A0A173VG74	Phage minor capsid protein 2	NA
UHGV-0101763_33	eggNOG-mapper	742765.HMPREF9457_02121	NA	NA
UHGV-0101763_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0101763_33	COG	COG2369	NA	NA
UHGV-0101763_33	Structural annotation	PF06152	NA	NA
UHGV-0101763_34	PHROG	phrog_3711	NA	unknown function
UHGV-0101763_34	eggNOG-mapper	411462.DORLON_00789	NA	NA
UHGV-0101763_35	PHROG	phrog_12728	NA	unknown function
UHGV-0101763_35	UniRef90	UniRef90_A0A516KMW1	Putative membrane lipoprotein	NA
UHGV-0101763_35	eggNOG-mapper	742765.HMPREF9457_02125	NA	NA
UHGV-0101763_36	KOfam	K07584	NA	NA
UHGV-0101763_36	PHROG	phrog_4478	peptidase	other
UHGV-0101763_36	UniRef90	UniRef90_A0A3E5EK56	Ribosomal-processing cysteine protease Prp	NA
UHGV-0101763_36	eggNOG-mapper	411462.DORLON_00788	Pfam:Peptidase_C108	NA
UHGV-0101763_36	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0101763_36	COG	COG2868	NA	NA
UHGV-0101763_36	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0101763_37	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0101763_37	eggNOG-mapper	411462.DORLON_00787	NA	NA
UHGV-0101763_37	AcrCatalog	cluster_74817	NA	NA
UHGV-0101763_37	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0101763_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0101763_38	UniRef90	UniRef90_A0A391PHY8	Phage capsid protein	NA
UHGV-0101763_38	eggNOG-mapper	411462.DORLON_00786	COG NOG20168 non supervised orthologous group	NA
UHGV-0101763_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0101763_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0101763_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0101763_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0101763_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0101763_39	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0101763_40	PHROG	phrog_3366	NA	unknown function
UHGV-0101763_40	eggNOG-mapper	411462.DORLON_00784	NA	NA
UHGV-0101763_40	Pfam	PF20536	NA	DUF6751
UHGV-0101763_40	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0101763_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0101763_41	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-0101763_41	eggNOG-mapper	411462.DORLON_00783	NA	NA
UHGV-0101763_41	Structural annotation	PF11114	NA	NA
UHGV-0101763_42	PHROG	phrog_3266	tail completion	connector
UHGV-0101763_42	eggNOG-mapper	742765.HMPREF9457_02131	NA	NA
UHGV-0101763_42	Structural annotation	PF12691	NA	NA
UHGV-0101763_43	PHROG	phrog_3099	NA	unknown function
UHGV-0101763_43	eggNOG-mapper	411462.DORLON_00781	NA	NA
UHGV-0101763_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0101763_44	PHROG	phrog_4450	NA	unknown function
UHGV-0101763_44	eggNOG-mapper	411461.DORFOR_00738	NA	NA
UHGV-0101763_44	Pfam	PF20378	NA	DUF6673
UHGV-0101763_44	Structural annotation	PF20378	NA	NA
UHGV-0101763_45	PHROG	phrog_706	NA	unknown function
UHGV-0101763_45	UniRef90	UniRef90_UPI00156F6A1F	Gp15 family bacteriophage protein	NA
UHGV-0101763_45	eggNOG-mapper	411462.DORLON_00779	COG NOG24969 non supervised orthologous group	NA
UHGV-0101763_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0101763_45	Structural annotation	PF06854	NA	NA
UHGV-0101763_46	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0101763_46	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0101763_47	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0101763_47	UniRef90	UniRef90_A0A174JJE7	Phage-related protein	NA
UHGV-0101763_47	eggNOG-mapper	411461.DORFOR_00735	nuclear chromosome segregation	NA
UHGV-0101763_47	COG	COG1511	NA	NA
UHGV-0101763_47	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0101763_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0101763_48	UniRef90	UniRef90_A0A414S2W8	Phage tail protein	NA
UHGV-0101763_48	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0101763_48	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0101763_48	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0101763_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-0101763_48	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0101763_49	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0101763_49	UniRef90	UniRef90_R9MV22	Phage minor structural protein	NA
UHGV-0101763_49	eggNOG-mapper	1235798.C817_04594	Prophage endopeptidase tail	NA
UHGV-0101763_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0101763_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0101763_49	COG	COG4926	Phage-related protein	NA
UHGV-0101763_53	PHROG	phrog_1009	NA	unknown function
UHGV-0101763_53	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-0101763_53	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0101763_54	PHROG	phrog_1129	holin	lysis
UHGV-0101763_54	UniRef90	UniRef90_UPI001F15FE24	phage holin family protein	NA
UHGV-0101763_54	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0101763_54	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0101763_54	Structural annotation	PF06946	NA	NA
UHGV-0101763_56	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0101763_56	PHROG	phrog_435	endolysin	lysis
UHGV-0101763_56	UniRef90	UniRef90_A0A174JR12	N-acetylmuramoyl-L-alanine amidase LytC	NA
UHGV-0101763_56	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0101763_56	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0101763_56	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0101763_56	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA