UHGV-0101789

Genome information

Genome length 40,689 bps

CDS count 67

Completeness 99.90% (high-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101789
vOTU ID	vOTU-065896
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_204237
BioSample	SAMEA3449424
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.28
Jumbo phage	No

Genome content
Genome length	40,689 bps
GC content	43.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	92.38%
Average CDS length	562.93 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101789_1	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0101789_1	UniRef90	UniRef90_UPI00102F62AD	Ltp family lipoprotein	NA
UHGV-0101789_1	eggNOG-mapper	1120998.AUFC01000030_gene2202	Membrane	NA
UHGV-0101789_1	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0101789_1	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0101789_2	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0101789_3	eggNOG-mapper	411465.PEPMIC_00745	NA	NA
UHGV-0101789_4	UniRef90	UniRef90_UPI00164D57E4	NA	NA
UHGV-0101789_4	eggNOG-mapper	931626.Awo_c11420	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0101789_4	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0101789_4	COG	COG3209	NA	NA
UHGV-0101789_4	Structural annotation	PF19789	NA	NA
UHGV-0101789_5	eggNOG-mapper	693746.OBV_25000	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0101789_5	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0101789_5	Structural annotation	PF20747	NA	NA
UHGV-0101789_6	UniRef90	UniRef90_R6DQ52	Putative phage protein	NA
UHGV-0101789_6	Structural annotation	PF14594, NF033848, COG4926	NA	NA
UHGV-0101789_7	UniRef90	UniRef90_UPI0013797660	phage baseplate protein	NA
UHGV-0101789_8	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0101789_8	UniRef90	UniRef90_A0A1I2TN76	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0101789_8	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0101789_8	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0101789_10	PHROG	phrog_1021	NA	unknown function
UHGV-0101789_10	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0101789_12	PHROG	phrog_885	major tail protein	tail
UHGV-0101789_12	eggNOG-mapper	1235800.C819_02228	NA	NA
UHGV-0101789_12	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0101789_13	PHROG	phrog_957	head protein	head and packaging
UHGV-0101789_13	eggNOG-mapper	1256908.HMPREF0373_00472	NA	NA
UHGV-0101789_13	Structural annotation	PF12691	NA	NA
UHGV-0101789_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0101789_14	UniRef90	UniRef90_UPI001379FEE4	HK97 gp10 family phage protein	NA
UHGV-0101789_14	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0101789_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0101789_14	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0101789_15	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0101789_15	UniRef90	UniRef90_R6E225	Putative phage head-tail adaptor	NA
UHGV-0101789_15	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0101789_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0101789_16	PHROG	phrog_1236	head protein	head and packaging
UHGV-0101789_16	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0101789_16	Structural annotation	PF05135	NA	NA
UHGV-0101789_17	PHROG	phrog_10541	NA	unknown function
UHGV-0101789_17	eggNOG-mapper	1262449.CP6013_3200	NA	NA
UHGV-0101789_18	PHROG	phrog_212	major head protein	head and packaging
UHGV-0101789_18	UniRef90	UniRef90_UPI001C105D30	phage capsid protein	NA
UHGV-0101789_18	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0101789_18	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0101789_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0101789_19	UniRef90	UniRef90_UPI00137B133A	phage scaffolding protein	NA
UHGV-0101789_19	eggNOG-mapper	1235800.C819_02235	Phage minor structural protein GP20	NA
UHGV-0101789_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0101789_19	Structural annotation	PF06810	NA	NA
UHGV-0101789_20	PHROG	phrog_2649	endolysin	lysis
UHGV-0101789_20	UniRef90	UniRef90_A0A7X6X882	CHAP domain-containing protein	NA
UHGV-0101789_20	eggNOG-mapper	883109.HMPREF0380_00270	pathogenesis	NA
UHGV-0101789_20	Pfam	PF05257	CHAP domain	CHAP
UHGV-0101789_20	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0101789_20	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0101789_20	Structural annotation	PF00877, TIGR02594, COG3942	NA	NA
UHGV-0101789_21	PHROG	phrog_36029	NA	unknown function
UHGV-0101789_21	UniRef90	UniRef90_A0A318KD97	Superfamily 6 holin (LLH)	NA
UHGV-0101789_21	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-0101789_23	UniRef90	UniRef90_R6DSP7	Putative thiosulfate sulfurtransferase	NA
UHGV-0101789_24	KOfam	K05521	draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]	NA
UHGV-0101789_24	PHROG	phrog_6572	ADP-ribosylglycohydrolase	other
UHGV-0101789_24	UniRef90	UniRef90_A0A6N9QI42	ADP-ribosylglycohydrolase	NA
UHGV-0101789_24	eggNOG-mapper	1033734.CAET01000002_gene4424	ADP-ribosylglycohydrolase	NA
UHGV-0101789_24	Pfam	PF03747	ADP-ribosylglycohydrolase	ADP_ribosyl_GH
UHGV-0101789_24	COG	COG1397	ADP-ribosylglycohydrolase	NA
UHGV-0101789_24	Structural annotation	PF03747, NF041672, COG1397	NA	NA
UHGV-0101789_25	PHROG	phrog_2329	NA	unknown function
UHGV-0101789_25	UniRef90	UniRef90_A0A3R6JEY4	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0101789_25	eggNOG-mapper	1292035.H476_0264	NA	NA
UHGV-0101789_25	Structural annotation	PF04014, NF008463	NA	NA
UHGV-0101789_27	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0101789_27	UniRef90	UniRef90_UPI00130401BA	minor capsid protein	NA
UHGV-0101789_27	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0101789_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0101789_27	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0101789_27	COG	COG2369	NA	NA
UHGV-0101789_27	Structural annotation	PF03496, NF040688	NA	NA
UHGV-0101789_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0101789_28	UniRef90	UniRef90_R6EKW6	Putative phage portal protein SPP1 family	NA
UHGV-0101789_28	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0101789_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0101789_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0101789_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0101789_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0101789_29	UniRef90	UniRef90_A0A6N7XL45	PBSX family phage terminase large subunit	NA
UHGV-0101789_29	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0101789_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0101789_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0101789_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0101789_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0101789_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0101789_30	PHROG	phrog_1233	NA	unknown function
UHGV-0101789_30	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0101789_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0101789_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0101789_31	UniRef90	UniRef90_A0A396P294	Terminase small subunit	NA
UHGV-0101789_31	eggNOG-mapper	887325.HMPREF0381_0088	Terminase small subunit	NA
UHGV-0101789_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0101789_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0101789_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0101789_36	PHROG	phrog_13489	NA	unknown function
UHGV-0101789_36	eggNOG-mapper	1158601.I585_01174	NA	NA
UHGV-0101789_37	PHROG	phrog_21026	NA	unknown function
UHGV-0101789_40	Structural annotation	PF09889	NA	NA
UHGV-0101789_41	PHROG	phrog_25385	NA	unknown function
UHGV-0101789_41	eggNOG-mapper	476272.RUMHYD_03328	NA	NA
UHGV-0101789_42	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0101789_42	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0101789_42	eggNOG-mapper	1286171.EAL2_c19860	sigma factor activity	NA
UHGV-0101789_42	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0101789_42	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0101789_43	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0101789_43	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0101789_43	UniRef90	UniRef90_R6DSN6	Replicative DNA helicase	NA
UHGV-0101789_43	eggNOG-mapper	658088.HMPREF0987_00821	IstB-like ATP binding protein	NA
UHGV-0101789_43	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0101789_43	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0101789_43	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0101789_43	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0101789_44	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0101789_44	UniRef90	UniRef90_R6E0A4	DNA replication protein	NA
UHGV-0101789_44	eggNOG-mapper	1391647.AVSV01000022_gene2531	DnaD domain protein	NA
UHGV-0101789_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0101789_44	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0101789_45	eggNOG-mapper	1203606.HMPREF1526_01684	NA	NA
UHGV-0101789_46	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0101789_46	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0101789_46	UniRef90	UniRef90_UPI00192A6863	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0101789_46	eggNOG-mapper	1292035.H476_1025	Endodeoxyribonuclease RusA	NA
UHGV-0101789_46	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0101789_46	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0101789_46	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0101789_47	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0101789_48	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0101789_48	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0101789_48	UniRef90	UniRef90_R6E0A2	Single-stranded DNA-binding protein	NA
UHGV-0101789_48	eggNOG-mapper	888727.HMPREF9092_0557	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0101789_48	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0101789_48	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0101789_48	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0101789_48	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0101789_48	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0101789_49	PHROG	phrog_1029	NA	unknown function
UHGV-0101789_49	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0101789_49	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0101789_49	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0101789_50	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0101789_50	eggNOG-mapper	1232453.BAIF02000057_gene1139	NA	NA
UHGV-0101789_51	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0101789_51	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0101789_51	UniRef90	UniRef90_R6E1Z6	Recombinase phage RecT family	NA
UHGV-0101789_51	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0101789_51	Pfam	PF03837	RecT family	RecT
UHGV-0101789_51	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0101789_51	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0101789_51	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0101789_54	PHROG	phrog_674	NA	unknown function
UHGV-0101789_54	UniRef90	UniRef90_A0A844E1E5	NA	NA
UHGV-0101789_54	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0101789_54	Pfam	PF07083	NA	DUF1351
UHGV-0101789_54	Structural annotation	PF07083	NA	NA
UHGV-0101789_55	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101789_55	UniRef90	UniRef90_A0A416VA03	Recombinase	NA
UHGV-0101789_55	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0101789_55	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0101789_55	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0101789_55	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0101789_55	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0101789_56	PHROG	phrog_22529	NA	unknown function
UHGV-0101789_56	UniRef90	UniRef90_R6EKT9	3D domain-containing protein	NA
UHGV-0101789_56	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0101789_56	Pfam	PF06725	3D domain	3D
UHGV-0101789_56	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0101789_56	Structural annotation	PF06725, MF_02071, NF040677, COG3584	NA	NA
UHGV-0101789_57	Structural annotation	NF040990	NA	NA
UHGV-0101789_59	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0101789_59	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0101789_59	UniRef90	UniRef90_A0A6N7XKT7	Helix-turn-helix transcriptional regulator	NA
UHGV-0101789_59	eggNOG-mapper	1321784.HMPREF1987_01097	Helix-turn-helix XRE-family like proteins	NA
UHGV-0101789_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101789_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0101789_59	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0101789_63	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0101789_63	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0101789_63	UniRef90	UniRef90_UPI001D93A180	XRE family transcriptional regulator	NA
UHGV-0101789_63	eggNOG-mapper	525255.HMPREF0077_0434	Peptidase S24-like	NA
UHGV-0101789_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101789_63	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0101789_63	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0101789_63	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0101789_64	UniRef90	UniRef90_UPI0008635DE9	NA	NA
UHGV-0101789_64	eggNOG-mapper	697281.Mahau_2936	NA	NA
UHGV-0101789_64	Pfam	PF12686	NA	DUF3800
UHGV-0101789_65	KOfam	K14059	int; integrase	NA
UHGV-0101789_65	PHROG	phrog_1	integrase	integration and excision
UHGV-0101789_65	UniRef90	UniRef90_A0A845QLR8	Tyr recombinase domain-containing protein	NA
UHGV-0101789_65	eggNOG-mapper	936375.HMPREF1152_1040	Phage integrase family	NA
UHGV-0101789_65	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0101789_65	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0101789_65	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0101789_66	eggNOG-mapper	1256908.HMPREF0373_00970	NA	NA
UHGV-0101789_66	Structural annotation	NF041796	NA	NA
UHGV-0101789_67	KOfam	K07273	acm; lysozyme	NA
UHGV-0101789_67	PHROG	phrog_291	endolysin	lysis
UHGV-0101789_67	UniRef90	UniRef90_R6E4I3	Glycosyl hydrolase family 25	NA
UHGV-0101789_67	eggNOG-mapper	445971.ANASTE_02149	Glycosyl hydrolases family 25	NA
UHGV-0101789_67	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0101789_67	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0101789_67	COG	COG3103	NA	NA