UHGV-0101855

Genome information

Genome length 33,984 bps

CDS count 43

Completeness 96.59% (high-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0101855
vOTU ID	vOTU-073810
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_226008
BioSample	SAMEA3708557
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.59% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.14
Jumbo phage	No

Genome content
Genome length	33,984 bps
GC content	39.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	90.76%
Average CDS length	719.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0101855_1	KOfam	K14059	int; integrase	NA
UHGV-0101855_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0101855_1	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-0101855_1	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0101855_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0101855_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0101855_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0101855_2	UniRef90	UniRef90_UPI000E52DA24	zinc ribbon domain-containing protein	NA
UHGV-0101855_2	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0101855_2	Structural annotation	PF18933, PF02883, MF_02248, NF008627, COG5435, COG2847	NA	NA
UHGV-0101855_3	PHROG	phrog_1914	NA	unknown function
UHGV-0101855_3	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0101855_3	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0101855_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0101855_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0101855_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0101855_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0101855_4	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0101855_4	eggNOG-mapper	663278.Ethha_2423	sequence-specific DNA binding	NA
UHGV-0101855_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0101855_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0101855_4	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0101855_5	UniRef90	UniRef90_UPI000E51362F	helix-turn-helix domain-containing protein	NA
UHGV-0101855_5	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0101855_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0101855_5	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0101855_7	PHROG	phrog_585	NA	unknown function
UHGV-0101855_7	UniRef90	UniRef90_UPI00051C896C	NA	NA
UHGV-0101855_7	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0101855_7	Pfam	PF10711	NA	DUF2513
UHGV-0101855_7	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0101855_9	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0101855_9	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0101855_9	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0101855_9	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0101855_9	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0101855_9	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0101855_9	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0101855_9	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0101855_10	PHROG	phrog_98	NA	unknown function
UHGV-0101855_10	UniRef90	UniRef90_UPI000E48855B	YopX family protein	NA
UHGV-0101855_10	eggNOG-mapper	1450694.BTS2_0501	YopX protein	NA
UHGV-0101855_10	Pfam	PF09643	YopX protein	YopX
UHGV-0101855_10	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0101855_11	PHROG	phrog_6058	NA	unknown function
UHGV-0101855_11	Structural annotation	NF033787	NA	NA
UHGV-0101855_15	PHROG	phrog_5696	NA	unknown function
UHGV-0101855_15	UniRef90	UniRef90_UPI001B3C9C54	N-6 DNA methylase	NA
UHGV-0101855_15	eggNOG-mapper	397291.C804_06560	N-6 DNA Methylase	NA
UHGV-0101855_15	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0101855_15	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0101855_15	Structural annotation	COG0286	NA	NA
UHGV-0101855_16	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101855_16	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0101855_16	eggNOG-mapper	394503.Ccel_3305	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0101855_16	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0101855_16	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0101855_16	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0101855_17	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0101855_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0101855_17	UniRef90	UniRef90_UPI001B3C6404	tyrosine-type recombinase/integrase	NA
UHGV-0101855_17	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0101855_17	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0101855_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0101855_17	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0101855_17	Structural annotation	PF00589, PF13495, MF_01808, TIGR02224, COG4973	NA	NA
UHGV-0101855_18	PHROG	phrog_24518	NA	unknown function
UHGV-0101855_18	eggNOG-mapper	1007096.BAGW01000031_gene121	NA	NA
UHGV-0101855_19	PHROG	phrog_824	NA	unknown function
UHGV-0101855_19	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0101855_19	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0101855_19	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0101855_19	Structural annotation	PF08774	NA	NA
UHGV-0101855_22	PHROG	phrog_2999	NA	unknown function
UHGV-0101855_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0101855_24	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0101855_24	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0101855_25	eggNOG-mapper	394503.Ccel_3053	NA	NA
UHGV-0101855_25	Structural annotation	TIGR01636	NA	NA
UHGV-0101855_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0101855_26	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0101855_26	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0101855_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0101855_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0101855_27	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0101855_27	UniRef90	UniRef90_A0A4U7JDP0	P27 family phage terminase small subunit	NA
UHGV-0101855_27	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0101855_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0101855_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0101855_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0101855_28	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0101855_28	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0101855_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0101855_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0101855_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0101855_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0101855_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0101855_29	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0101855_29	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0101855_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0101855_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0101855_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0101855_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0101855_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0101855_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0101855_30	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0101855_30	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0101855_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0101855_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0101855_30	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0101855_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0101855_31	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0101855_31	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0101855_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0101855_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0101855_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0101855_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0101855_32	PHROG	phrog_749	NA	unknown function
UHGV-0101855_32	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0101855_32	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0101855_33	PHROG	phrog_19734	NA	unknown function
UHGV-0101855_33	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0101855_33	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0101855_33	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0101855_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0101855_34	eggNOG-mapper	272623.L59277	NA	NA
UHGV-0101855_34	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0101855_35	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0101855_35	eggNOG-mapper	1469948.JPNB01000001_gene696	NA	NA
UHGV-0101855_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0101855_35	Structural annotation	TIGR01725	NA	NA
UHGV-0101855_36	PHROG	phrog_88	major tail protein	tail
UHGV-0101855_36	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0101855_36	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0101855_36	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0101855_37	Structural annotation	PF11836	NA	NA
UHGV-0101855_38	KOfam	K19533	SYCP1; synaptonemal complex protein 1	NA
UHGV-0101855_38	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0101855_38	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-0101855_38	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0101855_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0101855_38	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0101855_38	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0101855_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0101855_39	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0101855_39	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0101855_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-0101855_39	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0101855_40	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0101855_40	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0101855_40	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0101855_40	COG	COG1511	NA	NA
UHGV-0101855_40	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0101855_41	eggNOG-mapper	1122931.AUAE01000019_gene984	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0101855_41	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0101855_42	PHROG	phrog_199	holin	lysis
UHGV-0101855_42	UniRef90	UniRef90_A0A2N0ULW7	Holin	NA
UHGV-0101855_42	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0101855_42	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0101855_42	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0101855_42	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0101855_42	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0101855_43	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0101855_43	PHROG	phrog_435	endolysin	lysis
UHGV-0101855_43	UniRef90	UniRef90_A0A373KFY8	SH3b domain-containing protein	NA
UHGV-0101855_43	eggNOG-mapper	1203606.HMPREF1526_01931	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0101855_43	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0101855_43	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0101855_43	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA